EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005024736 (Gene tree)
Gene ID: 101482117
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 21450 bases
Position: chrLG10:17262195-17283644
Accession: 101482117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005033157	EST1	PF10374.9	9.6e-13	1	1
ENSMZEP00005033157	EST1_DNA_bind	PF10373.9	5e-54	1	1
ENSMZEP00005033157	PIN_4	PF13638.6	4.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005034262	-	7403	XM_004550157	ENSMZEP00005033157	1647 (aa)	XP_004550214	UPI00032A2612

Gene Model

Click here to download ENSMZEG00005024736's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005024736's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005024736	smg6	74	55.294	ENSG00000070366	SMG6	100	58.640	Homo_sapiens
ENSMZEG00005024736	smg6	100	79.725	ENSAPOG00000019448	smg6	100	80.383	Acanthochromis_polyacanthus
ENSMZEG00005024736	smg6	74	54.996	ENSAMEG00000007632	SMG6	71	59.410	Ailuropoda_melanoleuca
ENSMZEG00005024736	smg6	93	85.231	ENSACIG00000012997	smg6	100	85.101	Amphilophus_citrinellus
ENSMZEG00005024736	smg6	100	80.203	ENSAOCG00000002630	smg6	100	80.932	Amphiprion_ocellaris
ENSMZEG00005024736	smg6	100	80.144	ENSAPEG00000019101	smg6	100	80.873	Amphiprion_percula
ENSMZEG00005024736	smg6	100	75.253	ENSATEG00000006483	smg6	100	75.075	Anabas_testudineus
ENSMZEG00005024736	smg6	62	49.049	ENSACAG00000011783	SMG6	72	53.013	Anolis_carolinensis
ENSMZEG00005024736	smg6	74	55.226	ENSANAG00000035760	SMG6	71	59.447	Aotus_nancymaae
ENSMZEG00005024736	smg6	100	99.697	ENSACLG00000005288	smg6	100	99.697	Astatotilapia_calliptera
ENSMZEG00005024736	smg6	77	65.830	ENSAMXG00000017326	smg6	88	67.985	Astyanax_mexicanus
ENSMZEG00005024736	smg6	76	54.455	ENSBTAG00000000267	SMG6	72	59.631	Bos_taurus
ENSMZEG00005024736	smg6	74	55.451	ENSCJAG00000001820	SMG6	71	59.447	Callithrix_jacchus
ENSMZEG00005024736	smg6	74	55.625	ENSCAFG00000019260	SMG6	72	59.631	Canis_familiaris
ENSMZEG00005024736	smg6	74	55.625	ENSCAFG00020009770	SMG6	72	59.631	Canis_lupus_dingo
ENSMZEG00005024736	smg6	74	55.669	ENSCHIG00000021998	SMG6	72	59.724	Capra_hircus
ENSMZEG00005024736	smg6	74	55.137	ENSTSYG00000003406	SMG6	100	58.088	Carlito_syrichta
ENSMZEG00005024736	smg6	69	52.982	ENSCAPG00000016197	SMG6	67	52.907	Cavia_aperea
ENSMZEG00005024736	smg6	76	53.647	ENSCPOG00000014878	SMG6	90	58.667	Cavia_porcellus
ENSMZEG00005024736	smg6	74	55.312	ENSCCAG00000035801	SMG6	71	59.263	Cebus_capucinus
ENSMZEG00005024736	smg6	80	53.086	ENSCATG00000031956	SMG6	71	59.191	Cercocebus_atys
ENSMZEG00005024736	smg6	80	52.651	ENSCLAG00000006748	SMG6	84	59.434	Chinchilla_lanigera
ENSMZEG00005024736	smg6	77	54.070	ENSCSAG00000013800	SMG6	71	59.467	Chlorocebus_sabaeus
ENSMZEG00005024736	smg6	91	53.239	ENSCPBG00000020369	SMG6	87	59.066	Chrysemys_picta_bellii
ENSMZEG00005024736	smg6	80	53.377	ENSCANG00000031764	SMG6	100	59.007	Colobus_angolensis_palliatus
ENSMZEG00005024736	smg6	74	50.630	ENSCGRG00000007782	Smg6	72	54.344	Cricetulus_griseus_crigri
ENSMZEG00005024736	smg6	100	68.885	ENSCSEG00000012757	smg6	100	68.645	Cynoglossus_semilaevis
ENSMZEG00005024736	smg6	100	68.471	ENSCVAG00000012789	smg6	100	68.933	Cyprinodon_variegatus
ENSMZEG00005024736	smg6	100	56.732	ENSDARG00000100481	smg6	100	55.276	Danio_rerio
ENSMZEG00005024736	smg6	74	54.874	ENSDNOG00000048283	SMG6	71	59.099	Dasypus_novemcinctus
ENSMZEG00005024736	smg6	78	49.741	ENSDORG00000016614	Smg6	84	59.242	Dipodomys_ordii
ENSMZEG00005024736	smg6	65	87.500	ENSETEG00000016790	SMG6	59	87.500	Echinops_telfairi
ENSMZEG00005024736	smg6	59	47.647	ENSEBUG00000005059	smg6	64	44.883	Eptatretus_burgeri
ENSMZEG00005024736	smg6	74	55.363	ENSEASG00005009318	SMG6	71	59.464	Equus_asinus_asinus
ENSMZEG00005024736	smg6	74	55.363	ENSECAG00000006519	SMG6	71	59.464	Equus_caballus
ENSMZEG00005024736	smg6	74	47.229	ENSEEUG00000003493	SMG6	68	57.895	Erinaceus_europaeus
ENSMZEG00005024736	smg6	89	74.513	ENSELUG00000005934	smg6	98	68.561	Esox_lucius
ENSMZEG00005024736	smg6	74	55.381	ENSFCAG00000028817	SMG6	72	59.631	Felis_catus
ENSMZEG00005024736	smg6	77	53.881	ENSFALG00000006538	SMG6	73	59.137	Ficedula_albicollis
ENSMZEG00005024736	smg6	80	52.762	ENSFDAG00000015106	SMG6	84	58.962	Fukomys_damarensis
ENSMZEG00005024736	smg6	100	68.402	ENSFHEG00000013282	smg6	100	68.402	Fundulus_heteroclitus
ENSMZEG00005024736	smg6	77	53.172	ENSGALG00000003108	SMG6	70	58.471	Gallus_gallus
ENSMZEG00005024736	smg6	100	69.785	ENSGAFG00000000379	smg6	100	69.097	Gambusia_affinis
ENSMZEG00005024736	smg6	84	76.021	ENSGACG00000020521	smg6	99	76.753	Gasterosteus_aculeatus
ENSMZEG00005024736	smg6	74	54.308	ENSGAGG00000025617	SMG6	73	58.059	Gopherus_agassizii
ENSMZEG00005024736	smg6	74	55.373	ENSGGOG00000017156	SMG6	71	59.375	Gorilla_gorilla
ENSMZEG00005024736	smg6	100	98.180	ENSHBUG00000021311	smg6	100	98.180	Haplochromis_burtoni
ENSMZEG00005024736	smg6	80	52.436	ENSHGLG00000012882	SMG6	84	59.434	Heterocephalus_glaber_female
ENSMZEG00005024736	smg6	80	52.616	ENSHGLG00100017815	SMG6	84	59.434	Heterocephalus_glaber_male
ENSMZEG00005024736	smg6	64	70.522	ENSHCOG00000008761	smg6	83	69.614	Hippocampus_comes
ENSMZEG00005024736	smg6	100	54.335	ENSIPUG00000012493	smg6	100	53.215	Ictalurus_punctatus
ENSMZEG00005024736	smg6	80	52.609	ENSSTOG00000028127	SMG6	84	58.768	Ictidomys_tridecemlineatus
ENSMZEG00005024736	smg6	58	50.200	ENSJJAG00000015367	Smg6	61	55.752	Jaculus_jaculus
ENSMZEG00005024736	smg6	100	72.820	ENSKMAG00000000279	smg6	100	71.948	Kryptolebias_marmoratus
ENSMZEG00005024736	smg6	100	74.731	ENSLBEG00000002184	smg6	100	74.671	Labrus_bergylta
ENSMZEG00005024736	smg6	77	53.483	ENSLAFG00000001261	SMG6	71	59.099	Loxodonta_africana
ENSMZEG00005024736	smg6	80	53.377	ENSMFAG00000003394	SMG6	71	59.467	Macaca_fascicularis
ENSMZEG00005024736	smg6	80	53.304	ENSMMUG00000023161	SMG6	71	59.375	Macaca_mulatta
ENSMZEG00005024736	smg6	77	52.090	ENSMNEG00000044592	SMG6	71	56.906	Macaca_nemestrina
ENSMZEG00005024736	smg6	75	60.177	ENSMLEG00000029353	SMG6	71	61.745	Mandrillus_leucophaeus
ENSMZEG00005024736	smg6	100	76.145	ENSMAMG00000020119	smg6	100	77.606	Mastacembelus_armatus
ENSMZEG00005024736	smg6	67	44.464	ENSMGAG00000005401	-	61	58.140	Meleagris_gallopavo
ENSMZEG00005024736	smg6	76	54.497	ENSMICG00000012913	SMG6	71	59.338	Microcebus_murinus
ENSMZEG00005024736	smg6	100	69.481	ENSMMOG00000010883	smg6	100	68.577	Mola_mola
ENSMZEG00005024736	smg6	74	55.994	ENSMODG00000010622	SMG6	72	59.578	Monodelphis_domestica
ENSMZEG00005024736	smg6	100	77.227	ENSMALG00000001106	smg6	100	76.629	Monopterus_albus
ENSMZEG00005024736	smg6	74	54.617	MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	Mus_caroli
ENSMZEG00005024736	smg6	74	54.567	ENSMUSG00000038290	Smg6	96	65.352	Mus_musculus
ENSMZEG00005024736	smg6	74	54.481	MGP_PahariEiJ_G0017866	Smg6	96	64.804	Mus_pahari
ENSMZEG00005024736	smg6	74	54.488	MGP_SPRETEiJ_G0017572	Smg6	96	65.070	Mus_spretus
ENSMZEG00005024736	smg6	74	55.425	ENSMPUG00000013046	SMG6	72	59.522	Mustela_putorius_furo
ENSMZEG00005024736	smg6	77	53.973	ENSMLUG00000005739	SMG6	72	59.412	Myotis_lucifugus
ENSMZEG00005024736	smg6	74	54.617	ENSNGAG00000007287	Smg6	84	58.768	Nannospalax_galili
ENSMZEG00005024736	smg6	98	93.279	ENSNBRG00000009511	smg6	99	95.903	Neolamprologus_brichardi
ENSMZEG00005024736	smg6	77	53.921	ENSNLEG00000017171	SMG6	100	58.640	Nomascus_leucogenys
ENSMZEG00005024736	smg6	74	54.910	ENSMEUG00000015804	SMG6	73	58.532	Notamacropus_eugenii
ENSMZEG00005024736	smg6	51	63.784	ENSOPRG00000000579	SMG6	79	63.978	Ochotona_princeps
ENSMZEG00005024736	smg6	76	48.365	ENSODEG00000008038	SMG6	81	52.907	Octodon_degus
ENSMZEG00005024736	smg6	100	96.543	ENSONIG00000005594	smg6	100	96.543	Oreochromis_niloticus
ENSMZEG00005024736	smg6	78	53.116	ENSOCUG00000013018	SMG6	71	59.191	Oryctolagus_cuniculus
ENSMZEG00005024736	smg6	100	67.587	ENSORLG00000003317	smg6	100	67.986	Oryzias_latipes
ENSMZEG00005024736	smg6	100	67.889	ENSORLG00020015343	smg6	100	68.029	Oryzias_latipes_hni
ENSMZEG00005024736	smg6	100	68.048	ENSORLG00015020454	smg6	100	68.607	Oryzias_latipes_hsok
ENSMZEG00005024736	smg6	100	67.930	ENSOMEG00000010838	smg6	100	68.851	Oryzias_melastigma
ENSMZEG00005024736	smg6	77	53.783	ENSOGAG00000004483	SMG6	71	59.141	Otolemur_garnettii
ENSMZEG00005024736	smg6	74	55.827	ENSOARG00000015076	SMG6	73	59.816	Ovis_aries
ENSMZEG00005024736	smg6	80	53.057	ENSPPAG00000043296	SMG6	71	59.191	Pan_paniscus
ENSMZEG00005024736	smg6	74	55.302	ENSPPRG00000014581	SMG6	72	59.631	Panthera_pardus
ENSMZEG00005024736	smg6	74	55.302	ENSPTIG00000008925	SMG6	100	58.824	Panthera_tigris_altaica
ENSMZEG00005024736	smg6	80	53.236	ENSPTRG00000008544	SMG6	100	58.640	Pan_troglodytes
ENSMZEG00005024736	smg6	77	53.996	ENSPANG00000024588	SMG6	71	59.375	Papio_anubis
ENSMZEG00005024736	smg6	69	51.762	ENSPSIG00000006660	SMG6	67	56.737	Pelodiscus_sinensis
ENSMZEG00005024736	smg6	95	79.589	ENSPMGG00000000844	smg6	99	79.452	Periophthalmus_magnuspinnatus
ENSMZEG00005024736	smg6	74	55.224	ENSPEMG00000020707	Smg6	85	58.294	Peromyscus_maniculatus_bairdii
ENSMZEG00005024736	smg6	100	70.669	ENSPFOG00000012035	smg6	99	73.390	Poecilia_formosa
ENSMZEG00005024736	smg6	100	70.532	ENSPLAG00000017660	smg6	100	69.856	Poecilia_latipinna
ENSMZEG00005024736	smg6	100	70.729	ENSPMEG00000000258	smg6	100	69.737	Poecilia_mexicana
ENSMZEG00005024736	smg6	100	69.910	ENSPREG00000010066	smg6	100	69.516	Poecilia_reticulata
ENSMZEG00005024736	smg6	74	51.562	ENSPPYG00000007790	SMG6	71	54.803	Pongo_abelii
ENSMZEG00005024736	smg6	74	60.183	ENSPCAG00000000552	SMG6	67	60.183	Procavia_capensis
ENSMZEG00005024736	smg6	76	54.227	ENSPCOG00000020925	SMG6	71	59.191	Propithecus_coquereli
ENSMZEG00005024736	smg6	70	62.968	ENSPVAG00000002159	SMG6	71	55.331	Pteropus_vampyrus
ENSMZEG00005024736	smg6	93	93.860	ENSPNYG00000024151	smg6	99	96.505	Pundamilia_nyererei
ENSMZEG00005024736	smg6	100	52.582	ENSPNAG00000015480	smg6	100	51.340	Pygocentrus_nattereri
ENSMZEG00005024736	smg6	76	53.765	ENSRNOG00000003041	Smg6	97	64.754	Rattus_norvegicus
ENSMZEG00005024736	smg6	80	53.639	ENSRBIG00000024746	SMG6	71	59.467	Rhinopithecus_bieti
ENSMZEG00005024736	smg6	80	53.450	ENSRROG00000030423	SMG6	100	59.007	Rhinopithecus_roxellana
ENSMZEG00005024736	smg6	74	55.156	ENSSBOG00000022518	SMG6	71	57.235	Saimiri_boliviensis_boliviensis
ENSMZEG00005024736	smg6	74	55.564	ENSSHAG00000010045	SMG6	71	59.158	Sarcophilus_harrisii
ENSMZEG00005024736	smg6	100	51.595	ENSSFOG00015005436	smg6	91	55.762	Scleropages_formosus
ENSMZEG00005024736	smg6	100	75.269	ENSSMAG00000019777	smg6	100	74.970	Scophthalmus_maximus
ENSMZEG00005024736	smg6	100	80.682	ENSSDUG00000016412	smg6	100	80.502	Seriola_dumerili
ENSMZEG00005024736	smg6	91	80.883	ENSSLDG00000020747	smg6	98	80.751	Seriola_lalandi_dorsalis
ENSMZEG00005024736	smg6	78	52.753	ENSSPUG00000007152	SMG6	89	50.221	Sphenodon_punctatus
ENSMZEG00005024736	smg6	100	79.952	ENSSPAG00000015633	smg6	100	80.323	Stegastes_partitus
ENSMZEG00005024736	smg6	74	55.748	ENSSSCG00000017826	SMG6	72	59.631	Sus_scrofa
ENSMZEG00005024736	smg6	77	53.424	ENSTGUG00000005836	SMG6	69	59.962	Taeniopygia_guttata
ENSMZEG00005024736	smg6	90	70.020	ENSTRUG00000000358	smg6	98	68.952	Takifugu_rubripes
ENSMZEG00005024736	smg6	91	77.984	ENSTNIG00000016164	smg6	99	78.145	Tetraodon_nigroviridis
ENSMZEG00005024736	smg6	74	52.516	ENSTBEG00000011424	SMG6	71	56.550	Tupaia_belangeri
ENSMZEG00005024736	smg6	66	56.958	ENSTTRG00000001175	SMG6	62	56.815	Tursiops_truncatus
ENSMZEG00005024736	smg6	74	54.874	ENSUAMG00000025152	SMG6	73	59.467	Ursus_americanus
ENSMZEG00005024736	smg6	74	55.110	ENSUMAG00000009306	SMG6	73	59.539	Ursus_maritimus
ENSMZEG00005024736	smg6	60	95.833	ENSVPAG00000000225	SMG6	58	95.833	Vicugna_pacos
ENSMZEG00005024736	smg6	74	56.320	ENSVVUG00000021727	SMG6	74	59.833	Vulpes_vulpes
ENSMZEG00005024736	smg6	66	55.596	ENSXETG00000023799	SMG6	85	50.881	Xenopus_tropicalis
ENSMZEG00005024736	smg6	98	68.869	ENSXCOG00000009867	smg6	99	68.118	Xiphophorus_couchianus
ENSMZEG00005024736	smg6	100	69.970	ENSXMAG00000010321	smg6	100	69.479	Xiphophorus_maculatus