EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSMZEG00005025416 (Gene tree)
Gene ID
101481678
Gene Symbol
pabpc1a
Alias
-
Full Name
polyadenylate-binding protein 1
Gene Type
protein_coding
Species
Maylandia_zebra
Status
putative
Strand
Plus strand
Length
7099 bases
Position
chrLG11:4958832-4965930
Accession
101481678
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMZEP00005033992PABPPF00658.185.2e-3211
ENSMZEP00005033990PABPPF00658.187.6e-3211
ENSMZEP00005033992RRM_5PF13893.62.3e-0812
ENSMZEP00005033992RRM_5PF13893.62.3e-0822
ENSMZEP00005033990RRM_5PF13893.64.1e-0812
ENSMZEP00005033990RRM_5PF13893.64.1e-0822
ENSMZEP00005033990RRM_1PF00076.222.2e-9314
ENSMZEP00005033990RRM_1PF00076.222.2e-9324
ENSMZEP00005033990RRM_1PF00076.222.2e-9334
ENSMZEP00005033990RRM_1PF00076.222.2e-9344
ENSMZEP00005033992RRM_1PF00076.225.7e-8714
ENSMZEP00005033992RRM_1PF00076.225.7e-8724
ENSMZEP00005033992RRM_1PF00076.225.7e-8734
ENSMZEP00005033992RRM_1PF00076.225.7e-8744
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMZET00005035186-4863XM_004560039ENSMZEP00005033990635 (aa)XP_004560096UPI000329F8FE
ENSMZET00005035188-1554-ENSMZEP00005033992517 (aa)--
Gene Model
Click here to download ENSMZEG00005025416's gene model file
Pathways
Pathway IDPathway NameSource
mze03013RNA transportKEGG
mze03015mRNA surveillance pathwayKEGG
mze03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005025416's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMZEG00005025416pabpc1a6878.889ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSMZEG00005025416pabpc1a6878.889ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSMZEG00005025416pabpc1a10098.110ENSAPOG00000015105pabpc1a10098.110Acanthochromis_polyacanthus
ENSMZEG00005025416pabpc1a10094.005ENSAPOG00000017776pabpc1b10090.439Acanthochromis_polyacanthus
ENSMZEG00005025416pabpc1a6878.889ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSMZEG00005025416pabpc1a10099.213ENSACIG00000004685pabpc1a10099.213Amphilophus_citrinellus
ENSMZEG00005025416pabpc1a10093.285ENSACIG00000018366pabpc1b10086.719Amphilophus_citrinellus
ENSMZEG00005025416pabpc1a10098.268ENSAOCG00000011656pabpc1a10098.268Amphiprion_ocellaris
ENSMZEG00005025416pabpc1a10090.618ENSAOCG00000019839pabpc1b10090.596Amphiprion_ocellaris
ENSMZEG00005025416pabpc1a10090.618ENSAPEG00000010435pabpc1b10090.596Amphiprion_percula
ENSMZEG00005025416pabpc1a10098.268ENSAPEG00000006963pabpc1a10098.268Amphiprion_percula
ENSMZEG00005025416pabpc1a10097.638ENSATEG00000024852pabpc1a10097.638Anabas_testudineus
ENSMZEG00005025416pabpc1a10090.596ENSATEG00000012917pabpc1b9990.596Anabas_testudineus
ENSMZEG00005025416pabpc1a6878.889ENSANAG00000019431-9880.102Aotus_nancymaae
ENSMZEG00005025416pabpc1a6878.889ENSANAG00000019429-9880.102Aotus_nancymaae
ENSMZEG00005025416pabpc1a10093.510ENSACLG00000014335pabpc1b9993.510Astatotilapia_calliptera
ENSMZEG00005025416pabpc1a100100.000ENSACLG00000009399pabpc1a100100.000Astatotilapia_calliptera
ENSMZEG00005025416pabpc1a10091.972ENSAMXG00000008599pabpc1b9991.972Astyanax_mexicanus
ENSMZEG00005025416pabpc1a6878.889ENSBTAG00000050902-9879.024Bos_taurus
ENSMZEG00005025416pabpc1a6878.889ENSBTAG00000052491-9778.889Bos_taurus
ENSMZEG00005025416pabpc1a6878.889ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSMZEG00005025416pabpc1a6878.889ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSMZEG00005025416pabpc1a6878.889ENSCHIG00000011138-9880.102Capra_hircus
ENSMZEG00005025416pabpc1a6878.889ENSCHIG00000006283-9880.102Capra_hircus
ENSMZEG00005025416pabpc1a6878.889ENSTSYG00000001775-9880.102Carlito_syrichta
ENSMZEG00005025416pabpc1a6878.889ENSCPOG00000009525-9880.102Cavia_porcellus
ENSMZEG00005025416pabpc1a6878.889ENSCCAG00000031524-9880.102Cebus_capucinus
ENSMZEG00005025416pabpc1a6878.889ENSCATG00000043125-9880.102Cercocebus_atys
ENSMZEG00005025416pabpc1a6878.889ENSCATG00000042826-9880.102Cercocebus_atys
ENSMZEG00005025416pabpc1a6876.667ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSMZEG00005025416pabpc1a6876.667ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSMZEG00005025416pabpc1a6878.889ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSMZEG00005025416pabpc1a6879.641ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSMZEG00005025416pabpc1a9999.279ENSCSEG00000013324pabpc1a9999.279Cynoglossus_semilaevis
ENSMZEG00005025416pabpc1a10091.743ENSCSEG00000015241-10088.871Cynoglossus_semilaevis
ENSMZEG00005025416pabpc1a10097.638ENSCVAG00000021872pabpc1a10097.638Cyprinodon_variegatus
ENSMZEG00005025416pabpc1a10089.474ENSCVAG00000005489pabpc1b9989.474Cyprinodon_variegatus
ENSMZEG00005025416pabpc1a10090.596ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSMZEG00005025416pabpc1a10096.154ENSDARG00000017219pabpc1a10091.536Danio_rerio
ENSMZEG00005025416pabpc1a6879.191ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSMZEG00005025416pabpc1a6876.111ENSDORG00000011362-9877.551Dipodomys_ordii
ENSMZEG00005025416pabpc1a6878.889ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSMZEG00005025416pabpc1a6878.889ENSECAG00000002620-9878.641Equus_caballus
ENSMZEG00005025416pabpc1a6875.000ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSMZEG00005025416pabpc1a9993.868ENSELUG00000003614pabpc1a10093.868Esox_lucius
ENSMZEG00005025416pabpc1a10091.156ENSELUG00000015062-9991.156Esox_lucius
ENSMZEG00005025416pabpc1a6858.937ENSELUG00000005389-9758.621Esox_lucius
ENSMZEG00005025416pabpc1a6878.889ENSFCAG00000039701-9880.102Felis_catus
ENSMZEG00005025416pabpc1a6878.889ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSMZEG00005025416pabpc1a10097.795ENSFHEG00000018979pabpc1a10097.795Fundulus_heteroclitus
ENSMZEG00005025416pabpc1a10092.661ENSFHEG00000008186pabpc1b9991.076Fundulus_heteroclitus
ENSMZEG00005025416pabpc1a9994.725ENSGMOG00000013448pabpc1a9994.725Gadus_morhua
ENSMZEG00005025416pabpc1a9494.241ENSGMOG00000002448-10080.930Gadus_morhua
ENSMZEG00005025416pabpc1a10091.136ENSGAFG00000010193pabpc1b9991.304Gambusia_affinis
ENSMZEG00005025416pabpc1a10097.323ENSGAFG00000019750pabpc1a10097.323Gambusia_affinis
ENSMZEG00005025416pabpc1a10097.480ENSGACG00000003572pabpc1a10097.480Gasterosteus_aculeatus
ENSMZEG00005025416pabpc1a10089.474ENSGACG00000003771pabpc1b9989.474Gasterosteus_aculeatus
ENSMZEG00005025416pabpc1a6878.889ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSMZEG00005025416pabpc1a6878.889ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSMZEG00005025416pabpc1a100100.000ENSHBUG00000020487pabpc1a100100.000Haplochromis_burtoni
ENSMZEG00005025416pabpc1a10093.510ENSHBUG00000002075pabpc1b9993.510Haplochromis_burtoni
ENSMZEG00005025416pabpc1a6877.778ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSMZEG00005025416pabpc1a6877.778ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSMZEG00005025416pabpc1a6877.778ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSMZEG00005025416pabpc1a9387.500ENSHCOG00000003175pabpc1b9977.087Hippocampus_comes
ENSMZEG00005025416pabpc1a10097.480ENSHCOG00000013502pabpc1a10097.480Hippocampus_comes
ENSMZEG00005025416pabpc1a10096.386ENSIPUG00000008848pabpc1a9996.386Ictalurus_punctatus
ENSMZEG00005025416pabpc1a10084.458ENSIPUG00000010791-10084.458Ictalurus_punctatus
ENSMZEG00005025416pabpc1a7858.209ENSIPUG00000018724-7658.209Ictalurus_punctatus
ENSMZEG00005025416pabpc1a7064.641ENSIPUG00000021244-6555.717Ictalurus_punctatus
ENSMZEG00005025416pabpc1a6878.333ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSMZEG00005025416pabpc1a6878.333ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSMZEG00005025416pabpc1a6877.222ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSMZEG00005025416pabpc1a10097.638ENSKMAG00000000605pabpc1a10097.638Kryptolebias_marmoratus
ENSMZEG00005025416pabpc1a10091.364ENSKMAG00000008049pabpc1b9991.364Kryptolebias_marmoratus
ENSMZEG00005025416pabpc1a10093.285ENSLBEG00000026845pabpc1b9993.285Labrus_bergylta
ENSMZEG00005025416pabpc1a10097.480ENSLBEG00000024002-10097.480Labrus_bergylta
ENSMZEG00005025416pabpc1a6877.778ENSLAFG00000023096-9878.974Loxodonta_africana
ENSMZEG00005025416pabpc1a6878.453ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSMZEG00005025416pabpc1a6878.889ENSMMUG00000009740-9880.102Macaca_mulatta
ENSMZEG00005025416pabpc1a6878.889ENSMMUG00000039929-9880.102Macaca_mulatta
ENSMZEG00005025416pabpc1a6878.889ENSMMUG00000037681-9880.102Macaca_mulatta
ENSMZEG00005025416pabpc1a6878.889ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSMZEG00005025416pabpc1a6878.889ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSMZEG00005025416pabpc1a10094.484ENSMAMG00000014610pabpc1b9991.136Mastacembelus_armatus
ENSMZEG00005025416pabpc1a9998.798ENSMAMG00000004502-10097.795Mastacembelus_armatus
ENSMZEG00005025416pabpc1a10093.510ENSMZEG00005026745pabpc1b9993.510Maylandia_zebra
ENSMZEG00005025416pabpc1a6878.889ENSMICG00000047642-9880.102Microcebus_murinus
ENSMZEG00005025416pabpc1a10098.066ENSMMOG00000018044pabpc1a10098.077Mola_mola
ENSMZEG00005025416pabpc1a10085.086ENSMMOG00000018009pabpc1b10085.243Mola_mola
ENSMZEG00005025416pabpc1a9881.053ENSMODG00000013156-9879.335Monodelphis_domestica
ENSMZEG00005025416pabpc1a9872.406ENSMODG00000015024-9872.406Monodelphis_domestica
ENSMZEG00005025416pabpc1a10087.478ENSMALG00000006066pabpc1b9987.478Monopterus_albus
ENSMZEG00005025416pabpc1a10099.279ENSMALG00000013020-9999.279Monopterus_albus
ENSMZEG00005025416pabpc1a6880.838ENSNGAG00000012688-9878.571Nannospalax_galili
ENSMZEG00005025416pabpc1a100100.000ENSNBRG00000003068-100100.000Neolamprologus_brichardi
ENSMZEG00005025416pabpc1a10093.750ENSNBRG00000013737pabpc1b9993.750Neolamprologus_brichardi
ENSMZEG00005025416pabpc1a6878.889ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSMZEG00005025416pabpc1a6878.333ENSODEG00000018540-9879.592Octodon_degus
ENSMZEG00005025416pabpc1a10093.269ENSONIG00000002717pabpc1b9993.269Oreochromis_niloticus
ENSMZEG00005025416pabpc1a10099.760ENSONIG00000006871-10099.055Oreochromis_niloticus
ENSMZEG00005025416pabpc1a6878.889ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSMZEG00005025416pabpc1a10099.010ENSORLG00000002691pabpc1a10098.571Oryzias_latipes
ENSMZEG00005025416pabpc1a10089.663ENSORLG00000003008-9889.663Oryzias_latipes
ENSMZEG00005025416pabpc1a9990.196ENSORLG00020022259-9989.423Oryzias_latipes_hni
ENSMZEG00005025416pabpc1a10099.010ENSORLG00020022398pabpc1a10096.378Oryzias_latipes_hni
ENSMZEG00005025416pabpc1a10089.663ENSORLG00015010932-9989.663Oryzias_latipes_hsok
ENSMZEG00005025416pabpc1a10099.010ENSORLG00015013633pabpc110096.220Oryzias_latipes_hsok
ENSMZEG00005025416pabpc1a10084.586ENSOMEG00000013627pabpc1b10084.586Oryzias_melastigma
ENSMZEG00005025416pabpc1a10099.010ENSOMEG00000020219pabpc1a10097.165Oryzias_melastigma
ENSMZEG00005025416pabpc1a6878.889ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSMZEG00005025416pabpc1a6878.889ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSMZEG00005025416pabpc1a6878.889ENSOARG00000005943-9880.102Ovis_aries
ENSMZEG00005025416pabpc1a6878.889ENSPPAG00000012920-9880.102Pan_paniscus
ENSMZEG00005025416pabpc1a6878.889ENSPPRG00000011804-9880.102Panthera_pardus
ENSMZEG00005025416pabpc1a6878.889ENSPPRG00000011809-9880.102Panthera_pardus
ENSMZEG00005025416pabpc1a6878.889ENSPTRG00000028252-9880.102Pan_troglodytes
ENSMZEG00005025416pabpc1a6878.889ENSPANG00000011549-9880.102Papio_anubis
ENSMZEG00005025416pabpc1a10091.284ENSPKIG00000005676pabpc1b10090.439Paramormyrops_kingsleyae
ENSMZEG00005025416pabpc1a8092.308ENSPMGG00000023134-9792.377Periophthalmus_magnuspinnatus
ENSMZEG00005025416pabpc1a8098.077ENSPMGG00000022487pabpc1a9298.202Periophthalmus_magnuspinnatus
ENSMZEG00005025416pabpc1a9976.606ENSPCIG00000016995-5576.606Phascolarctos_cinereus
ENSMZEG00005025416pabpc1a10094.231ENSPFOG00000005917pabpc1b9991.136Poecilia_formosa
ENSMZEG00005025416pabpc1a10096.136ENSPFOG00000010815pabpc1a10096.136Poecilia_formosa
ENSMZEG00005025416pabpc1a10091.364ENSPLAG00000001388pabpc1b9991.533Poecilia_latipinna
ENSMZEG00005025416pabpc1a10098.110ENSPLAG00000004114pabpc1a10098.110Poecilia_latipinna
ENSMZEG00005025416pabpc1a10094.231ENSPMEG00000014399pabpc1b9991.136Poecilia_mexicana
ENSMZEG00005025416pabpc1a10098.110ENSPMEG00000001334pabpc1a10098.110Poecilia_mexicana
ENSMZEG00005025416pabpc1a10099.420ENSPREG00000019595pabpc1a10099.519Poecilia_reticulata
ENSMZEG00005025416pabpc1a10091.364ENSPREG00000010911pabpc1b9991.533Poecilia_reticulata
ENSMZEG00005025416pabpc1a6878.889ENSPPYG00000020468-9880.102Pongo_abelii
ENSMZEG00005025416pabpc1a6878.889ENSPCAG00000005308-9880.102Procavia_capensis
ENSMZEG00005025416pabpc1a6878.333ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSMZEG00005025416pabpc1a6879.330ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSMZEG00005025416pabpc1a100100.000ENSPNYG00000005192pabpc1a100100.000Pundamilia_nyererei
ENSMZEG00005025416pabpc1a10093.510ENSPNYG00000012578pabpc1b9993.510Pundamilia_nyererei
ENSMZEG00005025416pabpc1a10095.904ENSPNAG00000028408pabpc1a9995.904Pygocentrus_nattereri
ENSMZEG00005025416pabpc1a10091.514ENSPNAG00000024626pabpc1b9991.344Pygocentrus_nattereri
ENSMZEG00005025416pabpc1a9989.671ENSRBIG00000028738-9589.671Rhinopithecus_bieti
ENSMZEG00005025416pabpc1a6878.889ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSMZEG00005025416pabpc1a6878.889ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSMZEG00005025416pabpc1a9768.282ENSSHAG00000000511-10068.282Sarcophilus_harrisii
ENSMZEG00005025416pabpc1a10091.116ENSSFOG00015006662pabpc1a9991.116Scleropages_formosus
ENSMZEG00005025416pabpc1a7877.070ENSSFOG00015019668-8878.613Scleropages_formosus
ENSMZEG00005025416pabpc1a10094.712ENSSFOG00015002752-9994.712Scleropages_formosus
ENSMZEG00005025416pabpc1a10099.010ENSSMAG00000010803pabpc1a10097.795Scophthalmus_maximus
ENSMZEG00005025416pabpc1a10088.871ENSSMAG00000006869pabpc1b10089.028Scophthalmus_maximus
ENSMZEG00005025416pabpc1a10097.638ENSSDUG00000006675pabpc1a10097.638Seriola_dumerili
ENSMZEG00005025416pabpc1a10096.078ENSSDUG00000011965pabpc1b9991.304Seriola_dumerili
ENSMZEG00005025416pabpc1a10097.638ENSSLDG00000011661pabpc1a10097.638Seriola_lalandi_dorsalis
ENSMZEG00005025416pabpc1a10090.271ENSSLDG00000014156pabpc1b10090.202Seriola_lalandi_dorsalis
ENSMZEG00005025416pabpc1a10091.304ENSSPAG00000019265pabpc1b10090.909Stegastes_partitus
ENSMZEG00005025416pabpc1a10098.268ENSSPAG00000014453-10098.268Stegastes_partitus
ENSMZEG00005025416pabpc1a6878.889ENSSSCG00000032167-9880.102Sus_scrofa
ENSMZEG00005025416pabpc1a6878.889ENSSSCG00000036336-9880.102Sus_scrofa
ENSMZEG00005025416pabpc1a10092.806ENSTRUG00000003767-9990.951Takifugu_rubripes
ENSMZEG00005025416pabpc1a10095.413ENSTRUG00000011577-10095.440Takifugu_rubripes
ENSMZEG00005025416pabpc1a9997.590ENSTNIG00000013307pabpc1a10092.403Tetraodon_nigroviridis
ENSMZEG00005025416pabpc1a10088.341ENSTNIG00000009153pabpc1b10086.604Tetraodon_nigroviridis
ENSMZEG00005025416pabpc1a6878.889ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSMZEG00005025416pabpc1a6878.889ENSUAMG00000008089-9880.102Ursus_americanus
ENSMZEG00005025416pabpc1a9762.642ENSUMAG00000023926-8969.890Ursus_maritimus
ENSMZEG00005025416pabpc1a6878.889ENSUMAG00000003364-9880.102Ursus_maritimus
ENSMZEG00005025416pabpc1a6878.333ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSMZEG00005025416pabpc1a9745.581ENSXETG00000015439-9745.392Xenopus_tropicalis
ENSMZEG00005025416pabpc1a10091.811ENSXCOG00000017066pabpc1a10091.811Xiphophorus_couchianus
ENSMZEG00005025416pabpc1a10085.580ENSXCOG00000019901pabpc1b10085.423Xiphophorus_couchianus
ENSMZEG00005025416pabpc1a10097.480ENSXMAG00000002555pabpc1a10097.480Xiphophorus_maculatus
ENSMZEG00005025416pabpc1a10091.364ENSXMAG00000003753pabpc1b9991.533Xiphophorus_maculatus

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