EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005025536 (Gene tree)
Gene ID: 101471724
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Minus strand
Length: 7700 bases
Position: chrLG18:15939721-15947420
Accession: 101471724
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005034173	PRP38	PF03371.15	3.9e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005035371	-	3240	XM_004542543	ENSMZEP00005034173	461 (aa)	XP_004542600	UPI000329AD9D

Gene Model

Click here to download ENSMZEG00005025536's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005025536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005025536	prpf38b	62	94.792	ENSAPOG00000012791	-	98	91.503	Acanthochromis_polyacanthus
ENSMZEG00005025536	prpf38b	62	94.792	ENSAPOG00000005297	prpf38b	98	91.503	Acanthochromis_polyacanthus
ENSMZEG00005025536	prpf38b	62	94.444	ENSAOCG00000012675	prpf38b	89	91.721	Amphiprion_ocellaris
ENSMZEG00005025536	prpf38b	62	94.097	ENSAPEG00000010974	prpf38b	94	96.951	Amphiprion_percula
ENSMZEG00005025536	prpf38b	100	100.000	ENSACLG00000001712	prpf38b	100	100.000	Astatotilapia_calliptera
ENSMZEG00005025536	prpf38b	98	69.512	ENSDARG00000053101	prpf38b	90	93.506	Danio_rerio
ENSMZEG00005025536	prpf38b	98	85.683	ENSFHEG00000002861	prpf38b	98	85.683	Fundulus_heteroclitus
ENSMZEG00005025536	prpf38b	99	83.298	ENSGACG00000015154	prpf38b	99	85.439	Gasterosteus_aculeatus
ENSMZEG00005025536	prpf38b	100	99.783	ENSHBUG00000022496	prpf38b	100	99.783	Haplochromis_burtoni
ENSMZEG00005025536	prpf38b	96	67.865	ENSIPUG00000014942	prpf38b	95	63.656	Ictalurus_punctatus
ENSMZEG00005025536	prpf38b	98	87.118	ENSLBEG00000024500	prpf38b	89	94.512	Labrus_bergylta
ENSMZEG00005025536	prpf38b	98	92.593	ENSMAMG00000010641	prpf38b	98	92.810	Mastacembelus_armatus
ENSMZEG00005025536	prpf38b	100	99.783	ENSPNYG00000007625	prpf38b	100	99.783	Pundamilia_nyererei
ENSMZEG00005025536	prpf38b	98	92.358	ENSSPAG00000023160	-	98	92.576	Stegastes_partitus