EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005026361 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 9266 bases
Position: chrLG22:9696535-9705800
Accession: 101485261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005035269	zf-C2H2	PF00096.26	3.7e-17	1	3
ENSMZEP00005035269	zf-C2H2	PF00096.26	3.7e-17	2	3
ENSMZEP00005035269	zf-C2H2	PF00096.26	3.7e-17	3	3
ENSMZEP00005035269	zf-met	PF12874.7	2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005036516	-	1365	XM_004548933	ENSMZEP00005035268	454 (aa)	XP_004548990	-
ENSMZET00005036517	-	1914	XM_004548934	ENSMZEP00005035269	637 (aa)	XP_004548991	-

Gene Model

Click here to download ENSMZEG00005026361's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005026361's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005026361	prdm1b	62	76.633	ENSAPOG00000022084	prdm1b	84	78.643	Acanthochromis_polyacanthus
ENSMZEG00005026361	prdm1b	91	84.859	ENSACIG00000014426	prdm1b	97	84.859	Amphilophus_citrinellus
ENSMZEG00005026361	prdm1b	89	75.300	ENSAOCG00000002230	prdm1b	98	75.300	Amphiprion_ocellaris
ENSMZEG00005026361	prdm1b	95	74.675	ENSAPEG00000019826	prdm1b	100	74.272	Amphiprion_percula
ENSMZEG00005026361	prdm1b	85	37.710	ENSATEG00000014034	-	76	37.710	Anabas_testudineus
ENSMZEG00005026361	prdm1b	95	82.419	ENSATEG00000006924	prdm1b	100	82.419	Anabas_testudineus
ENSMZEG00005026361	prdm1b	93	97.059	ENSACLG00000005487	prdm1b	96	97.059	Astatotilapia_calliptera
ENSMZEG00005026361	prdm1b	61	58.667	ENSCSEG00000009707	prdm1a	58	58.667	Cynoglossus_semilaevis
ENSMZEG00005026361	prdm1b	95	76.575	ENSCVAG00000016746	prdm1b	99	76.948	Cyprinodon_variegatus
ENSMZEG00005026361	prdm1b	95	76.623	ENSFHEG00000019848	prdm1b	100	76.623	Fundulus_heteroclitus
ENSMZEG00005026361	prdm1b	92	77.850	ENSGAFG00000016191	prdm1b	97	78.013	Gambusia_affinis
ENSMZEG00005026361	prdm1b	87	69.870	ENSGACG00000002716	prdm1b	87	69.870	Gasterosteus_aculeatus
ENSMZEG00005026361	prdm1b	88	96.853	ENSHBUG00000001475	prdm1b	95	96.853	Haplochromis_burtoni
ENSMZEG00005026361	prdm1b	95	71.520	ENSHCOG00000003617	prdm1b	100	71.520	Hippocampus_comes
ENSMZEG00005026361	prdm1b	84	72.222	ENSIPUG00000013740	prdm1b	90	54.720	Ictalurus_punctatus
ENSMZEG00005026361	prdm1b	89	37.876	ENSKMAG00000016247	-	77	37.876	Kryptolebias_marmoratus
ENSMZEG00005026361	prdm1b	87	72.982	ENSKMAG00000011218	prdm1b	91	72.982	Kryptolebias_marmoratus
ENSMZEG00005026361	prdm1b	95	81.081	ENSLBEG00000020955	prdm1b	100	81.081	Labrus_bergylta
ENSMZEG00005026361	prdm1b	76	72.000	ENSLOCG00000004978	prdm1b	64	72.000	Lepisosteus_oculatus
ENSMZEG00005026361	prdm1b	89	81.475	ENSMMOG00000013458	prdm1b	96	81.475	Mola_mola
ENSMZEG00005026361	prdm1b	92	77.741	ENSMALG00000011410	prdm1b	99	77.907	Monopterus_albus
ENSMZEG00005026361	prdm1b	73	89.641	ENSONIG00000013583	prdm1b	77	89.641	Oreochromis_niloticus
ENSMZEG00005026361	prdm1b	94	68.966	ENSORLG00000010025	prdm1b	99	68.809	Oryzias_latipes
ENSMZEG00005026361	prdm1b	86	70.339	ENSORLG00015009022	prdm1b	92	70.169	Oryzias_latipes_hsok
ENSMZEG00005026361	prdm1b	95	47.805	ENSPKIG00000022335	prdm1b	83	48.382	Paramormyrops_kingsleyae
ENSMZEG00005026361	prdm1b	84	71.301	ENSPFOG00000003103	prdm1b	85	71.301	Poecilia_formosa
ENSMZEG00005026361	prdm1b	95	79.426	ENSPLAG00000018491	prdm1b	99	79.426	Poecilia_latipinna
ENSMZEG00005026361	prdm1b	95	80.806	ENSPMEG00000007869	prdm1b	100	80.806	Poecilia_mexicana
ENSMZEG00005026361	prdm1b	94	79.206	ENSPREG00000011327	prdm1b	99	79.206	Poecilia_reticulata
ENSMZEG00005026361	prdm1b	89	39.642	ENSPVAG00000011732	PRDM1	80	40.422	Pteropus_vampyrus
ENSMZEG00005026361	prdm1b	86	42.132	ENSPNAG00000028442	prdm1a	75	42.275	Pygocentrus_nattereri
ENSMZEG00005026361	prdm1b	86	58.393	ENSSFOG00015021896	prdm1b	78	58.393	Scleropages_formosus
ENSMZEG00005026361	prdm1b	95	78.822	ENSSMAG00000020467	prdm1b	100	78.974	Scophthalmus_maximus
ENSMZEG00005026361	prdm1b	88	38.193	ENSSDUG00000000524	-	76	38.193	Seriola_dumerili
ENSMZEG00005026361	prdm1b	95	82.643	ENSSDUG00000020610	prdm1b	100	82.643	Seriola_dumerili
ENSMZEG00005026361	prdm1b	88	37.441	ENSSLDG00000001957	-	76	37.441	Seriola_lalandi_dorsalis
ENSMZEG00005026361	prdm1b	95	82.035	ENSSLDG00000021973	prdm1b	99	82.781	Seriola_lalandi_dorsalis
ENSMZEG00005026361	prdm1b	95	79.160	ENSSPAG00000000803	prdm1b	100	79.806	Stegastes_partitus
ENSMZEG00005026361	prdm1b	89	37.898	ENSSPAG00000009830	-	77	37.898	Stegastes_partitus
ENSMZEG00005026361	prdm1b	90	79.966	ENSXCOG00000018920	prdm1b	84	79.966	Xiphophorus_couchianus
ENSMZEG00005026361	prdm1b	95	72.841	ENSXMAG00000016765	prdm1b	95	77.568	Xiphophorus_maculatus