EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMZEG00005027510 (Gene tree)
Gene ID: 101483474
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Maylandia_zebra
Status: putative
Strand: Plus strand
Length: 9315 bases
Position: chrLG13:13239836-13249150
Accession: 101483474
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMZEP00005036915	TUDOR	PF00567.24	0.00019	1	1
ENSMZEP00005036913	TUDOR	PF00567.24	0.00028	1	1
ENSMZEP00005036914	TUDOR	PF00567.24	0.00028	1	1
ENSMZEP00005036913	SMN	PF06003.12	1e-17	1	1
ENSMZEP00005036914	SMN	PF06003.12	1e-17	1	1
ENSMZEP00005036915	SMN	PF06003.12	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMZET00005038203	-	5197	-	ENSMZEP00005036913	238 (aa)	-	UPI000329D158
ENSMZET00005038204	-	4844	XM_004551542	ENSMZEP00005036914	238 (aa)	XP_004551599	UPI000329D158
ENSMZET00005038205	-	684	-	ENSMZEP00005036915	227 (aa)	-	-

Gene Model

Click here to download ENSMZEG00005027510's gene model file

Pathways

Pathway ID	Pathway Name	Source
mze03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMZEG00005027510's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMZEG00005027510	smndc1	100	76.471	ENSG00000119953	SMNDC1	100	76.471	Homo_sapiens
ENSMZEG00005027510	smndc1	100	91.176	ENSAPOG00000021772	smndc1	100	91.176	Acanthochromis_polyacanthus
ENSMZEG00005027510	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSMZEG00005027510	smndc1	100	95.798	ENSACIG00000004819	smndc1	100	95.798	Amphilophus_citrinellus
ENSMZEG00005027510	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSMZEG00005027510	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSMZEG00005027510	smndc1	100	91.597	ENSATEG00000006830	smndc1	100	91.597	Anabas_testudineus
ENSMZEG00005027510	smndc1	83	76.768	ENSAPLG00000004322	SMNDC1	100	76.768	Anas_platyrhynchos
ENSMZEG00005027510	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSMZEG00005027510	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSMZEG00005027510	smndc1	100	100.000	ENSACLG00000016360	smndc1	100	100.000	Astatotilapia_calliptera
ENSMZEG00005027510	smndc1	100	82.353	ENSAMXG00000020310	smndc1	100	82.353	Astyanax_mexicanus
ENSMZEG00005027510	smndc1	100	76.471	ENSBTAG00000000551	SMNDC1	100	76.471	Bos_taurus
ENSMZEG00005027510	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSMZEG00005027510	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSMZEG00005027510	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSMZEG00005027510	smndc1	100	76.471	ENSCHIG00000010604	SMNDC1	100	76.471	Capra_hircus
ENSMZEG00005027510	smndc1	100	76.471	ENSTSYG00000026454	SMNDC1	100	76.471	Carlito_syrichta
ENSMZEG00005027510	smndc1	84	72.637	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSMZEG00005027510	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSMZEG00005027510	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSMZEG00005027510	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSMZEG00005027510	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSMZEG00005027510	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSMZEG00005027510	smndc1	83	70.984	ENSCHOG00000002936	SMNDC1	100	72.021	Choloepus_hoffmanni
ENSMZEG00005027510	smndc1	100	76.471	ENSCPBG00000012837	SMNDC1	100	76.471	Chrysemys_picta_bellii
ENSMZEG00005027510	smndc1	100	70.168	ENSCANG00000034620	-	100	70.588	Colobus_angolensis_palliatus
ENSMZEG00005027510	smndc1	100	59.244	ENSCANG00000036994	-	100	59.244	Colobus_angolensis_palliatus
ENSMZEG00005027510	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSMZEG00005027510	smndc1	100	76.891	ENSCGRG00001012973	Smndc1	100	76.891	Cricetulus_griseus_chok1gshd
ENSMZEG00005027510	smndc1	100	76.891	ENSCGRG00000012396	Smndc1	100	76.891	Cricetulus_griseus_crigri
ENSMZEG00005027510	smndc1	100	81.933	ENSCSEG00000015621	smndc1	100	81.933	Cynoglossus_semilaevis
ENSMZEG00005027510	smndc1	100	86.134	ENSCVAG00000020432	smndc1	100	86.134	Cyprinodon_variegatus
ENSMZEG00005027510	smndc1	100	82.845	ENSDARG00000056235	smndc1	100	82.845	Danio_rerio
ENSMZEG00005027510	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSMZEG00005027510	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSMZEG00005027510	smndc1	95	42.169	FBgn0039977	CG17454	98	43.775	Drosophila_melanogaster
ENSMZEG00005027510	smndc1	100	67.635	ENSEBUG00000010929	smndc1	100	69.295	Eptatretus_burgeri
ENSMZEG00005027510	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSMZEG00005027510	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSMZEG00005027510	smndc1	83	55.556	ENSEEUG00000013407	-	100	55.556	Erinaceus_europaeus
ENSMZEG00005027510	smndc1	100	83.613	ENSELUG00000000227	smndc1	100	83.613	Esox_lucius
ENSMZEG00005027510	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSMZEG00005027510	smndc1	100	77.311	ENSFALG00000002306	SMNDC1	100	77.311	Ficedula_albicollis
ENSMZEG00005027510	smndc1	100	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSMZEG00005027510	smndc1	100	87.815	ENSFHEG00000020150	smndc1	100	87.815	Fundulus_heteroclitus
ENSMZEG00005027510	smndc1	100	81.933	ENSGMOG00000016585	smndc1	100	81.933	Gadus_morhua
ENSMZEG00005027510	smndc1	100	77.311	ENSGALG00000008561	SMNDC1	100	77.311	Gallus_gallus
ENSMZEG00005027510	smndc1	100	88.655	ENSGAFG00000011582	smndc1	100	88.655	Gambusia_affinis
ENSMZEG00005027510	smndc1	100	89.496	ENSGACG00000009468	smndc1	100	89.496	Gasterosteus_aculeatus
ENSMZEG00005027510	smndc1	100	76.471	ENSGAGG00000024547	SMNDC1	100	76.471	Gopherus_agassizii
ENSMZEG00005027510	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSMZEG00005027510	smndc1	100	100.000	ENSHBUG00000017596	smndc1	100	100.000	Haplochromis_burtoni
ENSMZEG00005027510	smndc1	100	55.738	ENSHGLG00000001157	-	100	54.918	Heterocephalus_glaber_female
ENSMZEG00005027510	smndc1	100	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSMZEG00005027510	smndc1	100	61.066	ENSHGLG00100004278	-	100	60.081	Heterocephalus_glaber_male
ENSMZEG00005027510	smndc1	100	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSMZEG00005027510	smndc1	100	84.519	ENSHCOG00000000783	smndc1	100	84.519	Hippocampus_comes
ENSMZEG00005027510	smndc1	100	83.613	ENSIPUG00000004217	smndc1	100	83.613	Ictalurus_punctatus
ENSMZEG00005027510	smndc1	100	76.471	ENSSTOG00000006088	SMNDC1	100	76.471	Ictidomys_tridecemlineatus
ENSMZEG00005027510	smndc1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSMZEG00005027510	smndc1	100	88.655	ENSKMAG00000020134	smndc1	100	88.655	Kryptolebias_marmoratus
ENSMZEG00005027510	smndc1	100	87.395	ENSLBEG00000004598	smndc1	100	87.395	Labrus_bergylta
ENSMZEG00005027510	smndc1	100	74.790	ENSLACG00000007784	SMNDC1	100	74.790	Latimeria_chalumnae
ENSMZEG00005027510	smndc1	100	81.513	ENSLOCG00000012355	smndc1	100	81.513	Lepisosteus_oculatus
ENSMZEG00005027510	smndc1	100	76.050	ENSLAFG00000014353	SMNDC1	100	76.050	Loxodonta_africana
ENSMZEG00005027510	smndc1	100	63.025	ENSMFAG00000038381	-	100	63.025	Macaca_fascicularis
ENSMZEG00005027510	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSMZEG00005027510	smndc1	100	63.025	ENSMMUG00000045875	-	100	63.025	Macaca_mulatta
ENSMZEG00005027510	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSMZEG00005027510	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSMZEG00005027510	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSMZEG00005027510	smndc1	100	71.967	ENSMLEG00000040236	SMNDC1	100	71.548	Mandrillus_leucophaeus
ENSMZEG00005027510	smndc1	89	88.263	ENSMAMG00000018233	smndc1	87	88.263	Mastacembelus_armatus
ENSMZEG00005027510	smndc1	91	73.148	ENSMGAG00000010777	SMNDC1	91	73.148	Meleagris_gallopavo
ENSMZEG00005027510	smndc1	99	62.447	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSMZEG00005027510	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSMZEG00005027510	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSMZEG00005027510	smndc1	100	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSMZEG00005027510	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSMZEG00005027510	smndc1	100	86.555	ENSMMOG00000008856	smndc1	100	86.555	Mola_mola
ENSMZEG00005027510	smndc1	100	76.471	ENSMODG00000010542	SMNDC1	100	76.471	Monodelphis_domestica
ENSMZEG00005027510	smndc1	100	89.496	ENSMALG00000017598	smndc1	100	89.496	Monopterus_albus
ENSMZEG00005027510	smndc1	100	75.630	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.630	Mus_caroli
ENSMZEG00005027510	smndc1	100	76.050	ENSMUSG00000025024	Smndc1	100	76.050	Mus_musculus
ENSMZEG00005027510	smndc1	100	76.050	MGP_PahariEiJ_G0014560	Smndc1	100	76.050	Mus_pahari
ENSMZEG00005027510	smndc1	100	76.050	MGP_SPRETEiJ_G0023993	Smndc1	100	76.050	Mus_spretus
ENSMZEG00005027510	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSMZEG00005027510	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSMZEG00005027510	smndc1	100	76.891	ENSNGAG00000006833	Smndc1	100	76.891	Nannospalax_galili
ENSMZEG00005027510	smndc1	100	99.160	ENSNBRG00000017089	smndc1	100	99.160	Neolamprologus_brichardi
ENSMZEG00005027510	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSMZEG00005027510	smndc1	70	58.434	ENSMEUG00000010120	-	98	53.535	Notamacropus_eugenii
ENSMZEG00005027510	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSMZEG00005027510	smndc1	100	55.042	ENSODEG00000007594	-	100	52.941	Octodon_degus
ENSMZEG00005027510	smndc1	100	99.160	ENSONIG00000000434	smndc1	100	99.160	Oreochromis_niloticus
ENSMZEG00005027510	smndc1	100	76.471	ENSOANG00000001598	SMNDC1	100	76.471	Ornithorhynchus_anatinus
ENSMZEG00005027510	smndc1	100	76.050	ENSOCUG00000008145	-	100	76.050	Oryctolagus_cuniculus
ENSMZEG00005027510	smndc1	100	57.391	ENSOCUG00000012274	-	100	59.244	Oryctolagus_cuniculus
ENSMZEG00005027510	smndc1	100	80.672	ENSORLG00000005934	smndc1	95	80.672	Oryzias_latipes
ENSMZEG00005027510	smndc1	100	80.672	ENSORLG00020008796	smndc1	95	80.672	Oryzias_latipes_hni
ENSMZEG00005027510	smndc1	100	80.252	ENSORLG00015013666	smndc1	100	80.252	Oryzias_latipes_hsok
ENSMZEG00005027510	smndc1	100	79.832	ENSOMEG00000007590	smndc1	100	79.832	Oryzias_melastigma
ENSMZEG00005027510	smndc1	100	76.471	ENSOGAG00000000571	SMNDC1	100	76.471	Otolemur_garnettii
ENSMZEG00005027510	smndc1	100	76.471	ENSOARG00000009500	SMNDC1	100	76.471	Ovis_aries
ENSMZEG00005027510	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSMZEG00005027510	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSMZEG00005027510	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSMZEG00005027510	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSMZEG00005027510	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSMZEG00005027510	smndc1	100	71.849	ENSPANG00000031346	-	100	71.849	Papio_anubis
ENSMZEG00005027510	smndc1	100	79.412	ENSPKIG00000017164	smndc1	100	80.833	Paramormyrops_kingsleyae
ENSMZEG00005027510	smndc1	100	76.471	ENSPSIG00000012257	SMNDC1	100	76.471	Pelodiscus_sinensis
ENSMZEG00005027510	smndc1	100	81.933	ENSPMGG00000015651	smndc1	100	81.933	Periophthalmus_magnuspinnatus
ENSMZEG00005027510	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSMZEG00005027510	smndc1	100	67.213	ENSPMAG00000007705	smndc1	100	67.213	Petromyzon_marinus
ENSMZEG00005027510	smndc1	97	57.826	ENSPCIG00000009693	-	100	57.826	Phascolarctos_cinereus
ENSMZEG00005027510	smndc1	100	76.471	ENSPCIG00000018419	SMNDC1	100	76.471	Phascolarctos_cinereus
ENSMZEG00005027510	smndc1	100	88.655	ENSPFOG00000017113	smndc1	100	88.655	Poecilia_formosa
ENSMZEG00005027510	smndc1	100	88.655	ENSPLAG00000010372	smndc1	100	88.655	Poecilia_latipinna
ENSMZEG00005027510	smndc1	100	88.655	ENSPMEG00000012288	smndc1	100	88.655	Poecilia_mexicana
ENSMZEG00005027510	smndc1	100	88.235	ENSPREG00000012279	smndc1	100	88.235	Poecilia_reticulata
ENSMZEG00005027510	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSMZEG00005027510	smndc1	83	70.984	ENSPCAG00000016183	SMNDC1	100	72.021	Procavia_capensis
ENSMZEG00005027510	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSMZEG00005027510	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSMZEG00005027510	smndc1	83	100.000	ENSPNYG00000024093	smndc1	86	100.000	Pundamilia_nyererei
ENSMZEG00005027510	smndc1	100	81.092	ENSPNAG00000025285	smndc1	100	81.092	Pygocentrus_nattereri
ENSMZEG00005027510	smndc1	100	75.630	ENSRNOG00000014833	Smndc1	100	75.630	Rattus_norvegicus
ENSMZEG00005027510	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSMZEG00005027510	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSMZEG00005027510	smndc1	100	62.605	ENSRROG00000039125	-	100	62.605	Rhinopithecus_roxellana
ENSMZEG00005027510	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSMZEG00005027510	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSMZEG00005027510	smndc1	100	76.471	ENSSHAG00000015189	SMNDC1	100	76.471	Sarcophilus_harrisii
ENSMZEG00005027510	smndc1	100	78.992	ENSSFOG00015008311	smndc1	100	78.992	Scleropages_formosus
ENSMZEG00005027510	smndc1	100	88.655	ENSSMAG00000020118	smndc1	100	88.655	Scophthalmus_maximus
ENSMZEG00005027510	smndc1	100	91.176	ENSSDUG00000015330	smndc1	100	91.176	Seriola_dumerili
ENSMZEG00005027510	smndc1	100	90.756	ENSSLDG00000017325	smndc1	100	90.756	Seriola_lalandi_dorsalis
ENSMZEG00005027510	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSMZEG00005027510	smndc1	100	76.891	ENSSPUG00000004574	SMNDC1	100	76.891	Sphenodon_punctatus
ENSMZEG00005027510	smndc1	100	90.336	ENSSPAG00000000338	smndc1	100	90.336	Stegastes_partitus
ENSMZEG00005027510	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSMZEG00005027510	smndc1	100	77.311	ENSTGUG00000010599	SMNDC1	100	77.311	Taeniopygia_guttata
ENSMZEG00005027510	smndc1	100	83.613	ENSTRUG00000023281	smndc1	100	83.613	Takifugu_rubripes
ENSMZEG00005027510	smndc1	100	84.454	ENSTNIG00000013331	smndc1	100	84.454	Tetraodon_nigroviridis
ENSMZEG00005027510	smndc1	100	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSMZEG00005027510	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSMZEG00005027510	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSMZEG00005027510	smndc1	83	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSMZEG00005027510	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSMZEG00005027510	smndc1	59	64.925	ENSXETG00000015415	SMNDC1	100	62.676	Xenopus_tropicalis
ENSMZEG00005027510	smndc1	100	88.235	ENSXCOG00000009159	smndc1	100	88.235	Xiphophorus_couchianus
ENSMZEG00005027510	smndc1	100	89.076	ENSXMAG00000012755	smndc1	100	89.076	Xiphophorus_maculatus