EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000000519 (Gene tree)
Gene ID: 102783638
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: DNA-directed RNA polymerase I subunit RPA1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 24352 bases
Position: chrJH422275.1:15857496-15881847
Accession: 102783638
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000000544	RNA_pol_Rpb1_5	PF04998.17	5.5e-100	1	1
ENSNBRP00000000544	RNA_pol_Rpb1_4	PF05000.17	9.9e-21	1	1
ENSNBRP00000000544	RNA_pol_Rpb1_2	PF00623.20	1.2e-67	1	1
ENSNBRP00000000544	RNA_pol_Rpb1_3	PF04983.18	4.4e-37	1	1
ENSNBRP00000000544	RNA_pol_Rpb1_1	PF04997.12	3.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000000583	-	5537	XM_006781893	ENSNBRP00000000544	1685 (aa)	XP_006781956	UPI0003EC5DCF

Gene Model

Click here to download ENSNBRG00000000519's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000000519's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000000519	polr1a	54	44.248	ENSNBRG00000014262	polr3a	64	44.248

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000000519	polr1a	100	65.780	ENSG00000068654	POLR1A	100	65.459	Homo_sapiens
ENSNBRG00000000519	polr1a	69	88.501	ENSAPOG00000017945	polr1a	99	88.501	Acanthochromis_polyacanthus
ENSNBRG00000000519	polr1a	100	66.088	ENSAMEG00000005807	POLR1A	100	69.011	Ailuropoda_melanoleuca
ENSNBRG00000000519	polr1a	100	84.852	ENSACIG00000022147	polr1a	100	84.675	Amphilophus_citrinellus
ENSNBRG00000000519	polr1a	100	86.466	ENSAOCG00000017336	polr1a	100	87.607	Amphiprion_ocellaris
ENSNBRG00000000519	polr1a	100	86.466	ENSAPEG00000016105	polr1a	100	86.718	Amphiprion_percula
ENSNBRG00000000519	polr1a	100	87.049	ENSATEG00000016773	polr1a	100	87.049	Anabas_testudineus
ENSNBRG00000000519	polr1a	85	67.391	ENSAPLG00000013871	POLR1A	99	67.573	Anas_platyrhynchos
ENSNBRG00000000519	polr1a	99	65.096	ENSACAG00000012141	POLR1A	99	64.980	Anolis_carolinensis
ENSNBRG00000000519	polr1a	100	65.046	ENSANAG00000033927	POLR1A	100	65.547	Aotus_nancymaae
ENSNBRG00000000519	polr1a	100	89.561	ENSACLG00000020541	polr1a	100	89.561	Astatotilapia_calliptera
ENSNBRG00000000519	polr1a	100	66.145	ENSBTAG00000006481	POLR1A	100	65.990	Bos_taurus
ENSNBRG00000000519	polr1a	99	38.744	WBGene00012999	rpoa-1	77	59.783	Caenorhabditis_elegans
ENSNBRG00000000519	polr1a	100	65.220	ENSCJAG00000019547	POLR1A	100	65.721	Callithrix_jacchus
ENSNBRG00000000519	polr1a	100	66.088	ENSCAFG00000007613	POLR1A	100	66.357	Canis_familiaris
ENSNBRG00000000519	polr1a	100	66.706	ENSCAFG00020014752	POLR1A	100	66.352	Canis_lupus_dingo
ENSNBRG00000000519	polr1a	100	66.143	ENSCHIG00000018204	POLR1A	100	65.738	Capra_hircus
ENSNBRG00000000519	polr1a	100	65.469	ENSTSYG00000002761	POLR1A	100	65.505	Carlito_syrichta
ENSNBRG00000000519	polr1a	97	62.552	ENSCAPG00000010132	POLR1A	100	63.139	Cavia_aperea
ENSNBRG00000000519	polr1a	100	65.719	ENSCPOG00000012350	POLR1A	100	66.414	Cavia_porcellus
ENSNBRG00000000519	polr1a	100	65.491	ENSCCAG00000019839	POLR1A	100	65.663	Cebus_capucinus
ENSNBRG00000000519	polr1a	100	65.876	ENSCATG00000029786	POLR1A	100	65.167	Cercocebus_atys
ENSNBRG00000000519	polr1a	100	65.210	ENSCLAG00000005187	POLR1A	100	65.817	Chinchilla_lanigera
ENSNBRG00000000519	polr1a	100	65.509	ENSCSAG00000016251	POLR1A	100	65.303	Chlorocebus_sabaeus
ENSNBRG00000000519	polr1a	99	66.492	ENSCPBG00000001115	POLR1A	99	66.608	Chrysemys_picta_bellii
ENSNBRG00000000519	polr1a	99	47.279	ENSCSAVG00000007184	-	99	46.911	Ciona_savignyi
ENSNBRG00000000519	polr1a	100	63.100	ENSCANG00000031785	POLR1A	100	62.888	Colobus_angolensis_palliatus
ENSNBRG00000000519	polr1a	96	66.088	ENSCGRG00001006651	Polr1a	100	61.311	Cricetulus_griseus_chok1gshd
ENSNBRG00000000519	polr1a	60	64.460	ENSCGRG00000010834	Polr1a	100	64.425	Cricetulus_griseus_crigri
ENSNBRG00000000519	polr1a	100	77.752	ENSCSEG00000020190	polr1a	100	77.869	Cynoglossus_semilaevis
ENSNBRG00000000519	polr1a	100	81.235	ENSCVAG00000020941	polr1a	100	81.059	Cyprinodon_variegatus
ENSNBRG00000000519	polr1a	100	72.626	ENSDARG00000098375	polr1a	100	72.626	Danio_rerio
ENSNBRG00000000519	polr1a	100	63.072	ENSDNOG00000010829	POLR1A	100	62.652	Dasypus_novemcinctus
ENSNBRG00000000519	polr1a	100	65.260	ENSDORG00000008298	Polr1a	100	65.220	Dipodomys_ordii
ENSNBRG00000000519	polr1a	79	44.684	FBgn0019938	RpI1	99	43.162	Drosophila_melanogaster
ENSNBRG00000000519	polr1a	72	87.500	ENSETEG00000000412	-	72	87.500	Echinops_telfairi
ENSNBRG00000000519	polr1a	89	46.939	ENSEBUG00000005667	-	99	46.908	Eptatretus_burgeri
ENSNBRG00000000519	polr1a	100	65.511	ENSEASG00005001625	POLR1A	100	66.068	Equus_asinus_asinus
ENSNBRG00000000519	polr1a	100	65.627	ENSECAG00000010092	POLR1A	99	69.876	Equus_caballus
ENSNBRG00000000519	polr1a	100	65.627	ENSECAG00000036306	-	99	69.876	Equus_caballus
ENSNBRG00000000519	polr1a	100	65.627	ENSECAG00000030510	-	99	69.876	Equus_caballus
ENSNBRG00000000519	polr1a	85	76.975	ENSEEUG00000000676	POLR1A	84	76.975	Erinaceus_europaeus
ENSNBRG00000000519	polr1a	100	74.100	ENSELUG00000012769	polr1a	99	74.649	Esox_lucius
ENSNBRG00000000519	polr1a	100	65.933	ENSFCAG00000008966	POLR1A	100	66.241	Felis_catus
ENSNBRG00000000519	polr1a	99	65.258	ENSFALG00000010082	POLR1A	99	65.455	Ficedula_albicollis
ENSNBRG00000000519	polr1a	100	65.411	ENSFDAG00000013726	POLR1A	100	65.872	Fukomys_damarensis
ENSNBRG00000000519	polr1a	100	78.935	ENSFHEG00000005996	polr1a	100	78.245	Fundulus_heteroclitus
ENSNBRG00000000519	polr1a	100	69.318	ENSGMOG00000002230	polr1a	100	69.017	Gadus_morhua
ENSNBRG00000000519	polr1a	89	63.601	ENSGALG00000038160	-	99	63.731	Gallus_gallus
ENSNBRG00000000519	polr1a	100	81.099	ENSGAFG00000015266	polr1a	100	81.028	Gambusia_affinis
ENSNBRG00000000519	polr1a	100	80.371	ENSGACG00000018791	polr1a	100	80.428	Gasterosteus_aculeatus
ENSNBRG00000000519	polr1a	89	67.874	ENSGAGG00000004984	-	95	72.087	Gopherus_agassizii
ENSNBRG00000000519	polr1a	100	65.838	ENSGGOG00000001788	POLR1A	100	65.340	Gorilla_gorilla
ENSNBRG00000000519	polr1a	90	98.227	ENSHBUG00000020021	polr1a	100	98.227	Haplochromis_burtoni
ENSNBRG00000000519	polr1a	100	66.357	ENSHGLG00000006334	POLR1A	100	66.357	Heterocephalus_glaber_female
ENSNBRG00000000519	polr1a	100	66.125	ENSHGLG00100006614	POLR1A	100	66.125	Heterocephalus_glaber_male
ENSNBRG00000000519	polr1a	100	76.860	ENSHCOG00000003345	polr1a	100	76.255	Hippocampus_comes
ENSNBRG00000000519	polr1a	100	71.570	ENSIPUG00000013174	polr1a	100	71.546	Ictalurus_punctatus
ENSNBRG00000000519	polr1a	100	65.579	ENSSTOG00000012580	POLR1A	100	65.139	Ictidomys_tridecemlineatus
ENSNBRG00000000519	polr1a	100	65.933	ENSJJAG00000013113	Polr1a	100	65.325	Jaculus_jaculus
ENSNBRG00000000519	polr1a	100	85.130	ENSKMAG00000007399	polr1a	100	84.944	Kryptolebias_marmoratus
ENSNBRG00000000519	polr1a	94	85.806	ENSLBEG00000015401	polr1a	99	86.165	Labrus_bergylta
ENSNBRG00000000519	polr1a	53	70.499	ENSLACG00000003218	polr1a	100	70.499	Latimeria_chalumnae
ENSNBRG00000000519	polr1a	100	71.395	ENSLOCG00000010881	polr1a	100	71.570	Lepisosteus_oculatus
ENSNBRG00000000519	polr1a	100	65.719	ENSLAFG00000014948	POLR1A	100	65.914	Loxodonta_africana
ENSNBRG00000000519	polr1a	100	65.587	ENSMFAG00000046097	POLR1A	100	65.283	Macaca_fascicularis
ENSNBRG00000000519	polr1a	100	65.587	ENSMMUG00000015815	POLR1A	100	65.283	Macaca_mulatta
ENSNBRG00000000519	polr1a	100	65.587	ENSMNEG00000043313	POLR1A	100	65.283	Macaca_nemestrina
ENSNBRG00000000519	polr1a	100	65.240	ENSMLEG00000042428	POLR1A	100	64.879	Mandrillus_leucophaeus
ENSNBRG00000000519	polr1a	100	85.833	ENSMAMG00000016565	polr1a	100	85.833	Mastacembelus_armatus
ENSNBRG00000000519	polr1a	100	99.347	ENSMZEG00005004915	polr1a	100	99.347	Maylandia_zebra
ENSNBRG00000000519	polr1a	99	63.384	ENSMGAG00000013111	POLR1A	99	63.252	Meleagris_gallopavo
ENSNBRG00000000519	polr1a	91	65.253	ENSMAUG00000008497	Polr1a	100	65.506	Mesocricetus_auratus
ENSNBRG00000000519	polr1a	100	65.453	ENSMICG00000000757	POLR1A	100	65.469	Microcebus_murinus
ENSNBRG00000000519	polr1a	100	65.623	ENSMOCG00000000122	Polr1a	100	65.893	Microtus_ochrogaster
ENSNBRG00000000519	polr1a	100	80.719	ENSMMOG00000010216	polr1a	100	80.636	Mola_mola
ENSNBRG00000000519	polr1a	100	61.864	ENSMODG00000009335	POLR1A	100	61.552	Monodelphis_domestica
ENSNBRG00000000519	polr1a	100	85.015	ENSMALG00000013363	polr1a	100	85.664	Monopterus_albus
ENSNBRG00000000519	polr1a	100	65.081	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.965	Mus_caroli
ENSNBRG00000000519	polr1a	100	65.081	ENSMUSG00000049553	Polr1a	100	65.081	Mus_musculus
ENSNBRG00000000519	polr1a	100	64.934	MGP_PahariEiJ_G0022230	Polr1a	100	65.409	Mus_pahari
ENSNBRG00000000519	polr1a	100	63.564	MGP_SPRETEiJ_G0029499	Polr1a	100	64.103	Mus_spretus
ENSNBRG00000000519	polr1a	100	65.645	ENSMPUG00000009135	POLR1A	100	66.009	Mustela_putorius_furo
ENSNBRG00000000519	polr1a	100	65.666	ENSMLUG00000015723	POLR1A	100	65.897	Myotis_lucifugus
ENSNBRG00000000519	polr1a	100	65.721	ENSNGAG00000017907	Polr1a	100	65.625	Nannospalax_galili
ENSNBRG00000000519	polr1a	100	64.134	ENSNLEG00000002264	POLR1A	100	63.720	Nomascus_leucogenys
ENSNBRG00000000519	polr1a	76	81.102	ENSMEUG00000011665	-	75	81.102	Notamacropus_eugenii
ENSNBRG00000000519	polr1a	99	60.957	ENSOPRG00000008269	POLR1A	100	61.275	Ochotona_princeps
ENSNBRG00000000519	polr1a	100	66.107	ENSODEG00000003542	POLR1A	100	66.241	Octodon_degus
ENSNBRG00000000519	polr1a	100	96.939	ENSONIG00000015895	polr1a	100	96.939	Oreochromis_niloticus
ENSNBRG00000000519	polr1a	100	65.611	ENSOCUG00000010138	POLR1A	100	66.570	Oryctolagus_cuniculus
ENSNBRG00000000519	polr1a	100	81.716	ENSORLG00000008753	polr1a	99	81.834	Oryzias_latipes
ENSNBRG00000000519	polr1a	100	78.605	ENSORLG00020020726	polr1a	99	78.723	Oryzias_latipes_hni
ENSNBRG00000000519	polr1a	95	88.298	ENSORLG00015016071	polr1a	98	88.298	Oryzias_latipes_hsok
ENSNBRG00000000519	polr1a	100	65.280	ENSOGAG00000004031	POLR1A	100	65.547	Otolemur_garnettii
ENSNBRG00000000519	polr1a	100	65.387	ENSOARG00000020601	POLR1A	100	66.243	Ovis_aries
ENSNBRG00000000519	polr1a	100	65.549	ENSPPAG00000042450	POLR1A	100	65.052	Pan_paniscus
ENSNBRG00000000519	polr1a	100	66.299	ENSPPRG00000006702	POLR1A	100	66.415	Panthera_pardus
ENSNBRG00000000519	polr1a	100	65.838	ENSPTIG00000018783	POLR1A	100	65.954	Panthera_tigris_altaica
ENSNBRG00000000519	polr1a	100	65.721	ENSPTRG00000012147	POLR1A	100	65.817	Pan_troglodytes
ENSNBRG00000000519	polr1a	100	65.703	ENSPANG00000025908	POLR1A	100	64.994	Papio_anubis
ENSNBRG00000000519	polr1a	100	71.512	ENSPKIG00000005468	polr1a	98	75.000	Paramormyrops_kingsleyae
ENSNBRG00000000519	polr1a	63	65.651	ENSPSIG00000009321	-	99	65.274	Pelodiscus_sinensis
ENSNBRG00000000519	polr1a	55	82.232	ENSPMGG00000009718	polr1a	95	82.232	Periophthalmus_magnuspinnatus
ENSNBRG00000000519	polr1a	100	65.320	ENSPEMG00000022224	Polr1a	100	65.681	Peromyscus_maniculatus_bairdii
ENSNBRG00000000519	polr1a	95	64.692	ENSPCIG00000004222	POLR1A	99	64.609	Phascolarctos_cinereus
ENSNBRG00000000519	polr1a	100	81.770	ENSPFOG00000005025	polr1a	100	81.968	Poecilia_formosa
ENSNBRG00000000519	polr1a	100	82.124	ENSPLAG00000021389	polr1a	100	81.995	Poecilia_latipinna
ENSNBRG00000000519	polr1a	100	78.802	ENSPMEG00000006463	polr1a	100	79.189	Poecilia_mexicana
ENSNBRG00000000519	polr1a	100	81.968	ENSPREG00000002389	polr1a	100	81.920	Poecilia_reticulata
ENSNBRG00000000519	polr1a	100	65.607	ENSPPYG00000012217	POLR1A	100	65.072	Pongo_abelii
ENSNBRG00000000519	polr1a	91	64.915	ENSPCAG00000011582	POLR1A	95	55.931	Procavia_capensis
ENSNBRG00000000519	polr1a	100	65.875	ENSPCOG00000026987	POLR1A	100	65.643	Propithecus_coquereli
ENSNBRG00000000519	polr1a	95	65.714	ENSPVAG00000012674	POLR1A	95	65.760	Pteropus_vampyrus
ENSNBRG00000000519	polr1a	100	99.169	ENSPNYG00000000026	polr1a	100	99.169	Pundamilia_nyererei
ENSNBRG00000000519	polr1a	100	72.005	ENSPNAG00000019223	polr1a	100	72.073	Pygocentrus_nattereri
ENSNBRG00000000519	polr1a	100	65.217	ENSRNOG00000009545	Polr1a	100	65.719	Rattus_norvegicus
ENSNBRG00000000519	polr1a	100	65.451	ENSRBIG00000028335	POLR1A	100	65.283	Rhinopithecus_bieti
ENSNBRG00000000519	polr1a	100	65.451	ENSRROG00000031473	POLR1A	100	65.283	Rhinopithecus_roxellana
ENSNBRG00000000519	polr1a	99	36.157	YOR341W	RPA190	99	35.986	Saccharomyces_cerevisiae
ENSNBRG00000000519	polr1a	100	65.026	ENSSBOG00000030262	POLR1A	100	65.779	Saimiri_boliviensis_boliviensis
ENSNBRG00000000519	polr1a	100	60.276	ENSSHAG00000014739	POLR1A	100	60.138	Sarcophilus_harrisii
ENSNBRG00000000519	polr1a	100	70.722	ENSSFOG00015019716	polr1a	100	70.465	Scleropages_formosus
ENSNBRG00000000519	polr1a	100	85.024	ENSSMAG00000014342	polr1a	100	85.310	Scophthalmus_maximus
ENSNBRG00000000519	polr1a	100	87.825	ENSSDUG00000014631	polr1a	100	87.884	Seriola_dumerili
ENSNBRG00000000519	polr1a	100	83.922	ENSSLDG00000024095	polr1a	100	83.922	Seriola_lalandi_dorsalis
ENSNBRG00000000519	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSNBRG00000000519	polr1a	95	72.500	ENSSPUG00000004215	POLR1A	98	72.500	Sphenodon_punctatus
ENSNBRG00000000519	polr1a	66	88.990	ENSSPAG00000016341	polr1a	96	88.990	Stegastes_partitus
ENSNBRG00000000519	polr1a	83	66.923	ENSSSCG00000008226	POLR1A	99	66.760	Sus_scrofa
ENSNBRG00000000519	polr1a	99	65.307	ENSTGUG00000010704	POLR1A	100	65.307	Taeniopygia_guttata
ENSNBRG00000000519	polr1a	100	78.950	ENSTRUG00000002210	polr1a	99	79.162	Takifugu_rubripes
ENSNBRG00000000519	polr1a	100	72.817	ENSTNIG00000010116	polr1a	100	72.844	Tetraodon_nigroviridis
ENSNBRG00000000519	polr1a	73	82.743	ENSTBEG00000008646	POLR1A	74	82.743	Tupaia_belangeri
ENSNBRG00000000519	polr1a	100	63.689	ENSTTRG00000008597	POLR1A	100	63.763	Tursiops_truncatus
ENSNBRG00000000519	polr1a	69	66.245	ENSUAMG00000012158	-	94	66.949	Ursus_americanus
ENSNBRG00000000519	polr1a	100	65.421	ENSUMAG00000006700	POLR1A	100	65.868	Ursus_maritimus
ENSNBRG00000000519	polr1a	100	66.125	ENSVVUG00000001245	POLR1A	100	66.125	Vulpes_vulpes
ENSNBRG00000000519	polr1a	100	62.478	ENSXETG00000001952	polr1a	99	64.151	Xenopus_tropicalis
ENSNBRG00000000519	polr1a	100	82.343	ENSXMAG00000004032	polr1a	100	82.128	Xiphophorus_maculatus