EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000000670 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 9358 bases
Position: chrJH422283.1:7192937-7202294
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000000837	UPF1_Zn_bind	PF09416.10	1.7e-75	1	1
ENSNBRP00000000837	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000000886	-	3264	-	ENSNBRP00000000837	1087 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000000670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000000670's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000000670	upf1	100	88.014	ENSNBRG00000022069	-	100	90.388

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000000670	upf1	100	89.413	ENSG00000005007	UPF1	100	89.067	Homo_sapiens
ENSNBRG00000000670	upf1	100	95.418	ENSAPOG00000023773	upf1	100	95.418	Acanthochromis_polyacanthus
ENSNBRG00000000670	upf1	100	91.462	ENSAPOG00000010916	-	100	91.462	Acanthochromis_polyacanthus
ENSNBRG00000000670	upf1	100	88.938	ENSAMEG00000011474	UPF1	100	88.594	Ailuropoda_melanoleuca
ENSNBRG00000000670	upf1	93	91.131	ENSACIG00000010985	-	100	91.228	Amphilophus_citrinellus
ENSNBRG00000000670	upf1	100	97.445	ENSACIG00000019949	upf1	100	97.445	Amphilophus_citrinellus
ENSNBRG00000000670	upf1	100	95.418	ENSAOCG00000018519	upf1	100	95.418	Amphiprion_ocellaris
ENSNBRG00000000670	upf1	100	91.553	ENSAOCG00000006352	-	100	91.553	Amphiprion_ocellaris
ENSNBRG00000000670	upf1	100	91.553	ENSAPEG00000006292	-	100	91.553	Amphiprion_percula
ENSNBRG00000000670	upf1	100	95.418	ENSAPEG00000016344	upf1	100	95.418	Amphiprion_percula
ENSNBRG00000000670	upf1	100	93.100	ENSATEG00000017867	upf1	100	93.280	Anabas_testudineus
ENSNBRG00000000670	upf1	100	91.462	ENSATEG00000016606	-	100	91.462	Anabas_testudineus
ENSNBRG00000000670	upf1	95	90.935	ENSAPLG00000009175	UPF1	100	90.892	Anas_platyrhynchos
ENSNBRG00000000670	upf1	95	89.205	ENSANAG00000024107	UPF1	95	88.742	Aotus_nancymaae
ENSNBRG00000000670	upf1	100	97.901	ENSACLG00000007181	upf1	100	97.901	Astatotilapia_calliptera
ENSNBRG00000000670	upf1	100	91.379	ENSACLG00000022630	-	100	91.379	Astatotilapia_calliptera
ENSNBRG00000000670	upf1	100	92.909	ENSAMXG00000042187	upf1	100	92.760	Astyanax_mexicanus
ENSNBRG00000000670	upf1	100	88.958	ENSBTAG00000020922	UPF1	100	88.614	Bos_taurus
ENSNBRG00000000670	upf1	82	54.394	WBGene00004880	smg-2	83	54.171	Caenorhabditis_elegans
ENSNBRG00000000670	upf1	100	88.546	ENSCJAG00000019627	UPF1	100	88.204	Callithrix_jacchus
ENSNBRG00000000670	upf1	100	88.722	ENSCAFG00000014578	UPF1	100	88.380	Canis_familiaris
ENSNBRG00000000670	upf1	100	89.591	ENSCAFG00020012347	UPF1	100	89.244	Canis_lupus_dingo
ENSNBRG00000000670	upf1	100	89.831	ENSCHIG00000011018	UPF1	100	89.483	Capra_hircus
ENSNBRG00000000670	upf1	95	90.625	ENSTSYG00000008877	UPF1	98	90.161	Carlito_syrichta
ENSNBRG00000000670	upf1	96	89.981	ENSCAPG00000005758	UPF1	95	89.972	Cavia_aperea
ENSNBRG00000000670	upf1	100	89.785	ENSCPOG00000025463	UPF1	100	89.257	Cavia_porcellus
ENSNBRG00000000670	upf1	100	89.413	ENSCCAG00000032175	UPF1	100	89.067	Cebus_capucinus
ENSNBRG00000000670	upf1	94	90.589	ENSCATG00000040306	UPF1	98	89.727	Cercocebus_atys
ENSNBRG00000000670	upf1	95	90.625	ENSCLAG00000004037	UPF1	99	90.066	Chinchilla_lanigera
ENSNBRG00000000670	upf1	100	89.413	ENSCSAG00000005276	UPF1	100	89.067	Chlorocebus_sabaeus
ENSNBRG00000000670	upf1	100	89.982	ENSCPBG00000012513	UPF1	100	89.937	Chrysemys_picta_bellii
ENSNBRG00000000670	upf1	78	79.812	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSNBRG00000000670	upf1	99	71.377	ENSCSAVG00000006533	-	99	71.429	Ciona_savignyi
ENSNBRG00000000670	upf1	95	90.530	ENSCANG00000029819	UPF1	97	90.066	Colobus_angolensis_palliatus
ENSNBRG00000000670	upf1	100	89.634	ENSCGRG00001021067	Upf1	100	89.196	Cricetulus_griseus_chok1gshd
ENSNBRG00000000670	upf1	95	90.341	ENSCGRG00000013480	Upf1	98	89.782	Cricetulus_griseus_crigri
ENSNBRG00000000670	upf1	100	91.667	ENSCSEG00000016159	-	100	91.629	Cynoglossus_semilaevis
ENSNBRG00000000670	upf1	100	88.535	ENSCSEG00000017239	upf1	100	88.535	Cynoglossus_semilaevis
ENSNBRG00000000670	upf1	100	91.099	ENSCVAG00000010561	upf1	100	91.099	Cyprinodon_variegatus
ENSNBRG00000000670	upf1	100	92.727	ENSDARG00000016302	upf1	100	92.760	Danio_rerio
ENSNBRG00000000670	upf1	95	90.658	ENSDORG00000009984	Upf1	95	90.095	Dipodomys_ordii
ENSNBRG00000000670	upf1	83	72.887	FBgn0030354	Upf1	77	72.917	Drosophila_melanogaster
ENSNBRG00000000670	upf1	55	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSNBRG00000000670	upf1	100	89.831	ENSEASG00005006549	UPF1	100	89.483	Equus_asinus_asinus
ENSNBRG00000000670	upf1	100	89.831	ENSECAG00000010639	UPF1	100	89.483	Equus_caballus
ENSNBRG00000000670	upf1	100	91.015	ENSELUG00000012916	-	100	90.386	Esox_lucius
ENSNBRG00000000670	upf1	100	92.148	ENSELUG00000020917	upf1	100	91.848	Esox_lucius
ENSNBRG00000000670	upf1	100	88.722	ENSFCAG00000009757	UPF1	100	88.380	Felis_catus
ENSNBRG00000000670	upf1	95	91.445	ENSFALG00000009312	UPF1	96	91.404	Ficedula_albicollis
ENSNBRG00000000670	upf1	95	90.530	ENSFDAG00000014816	UPF1	99	89.972	Fukomys_damarensis
ENSNBRG00000000670	upf1	100	91.081	ENSFHEG00000006428	upf1	100	90.000	Fundulus_heteroclitus
ENSNBRG00000000670	upf1	86	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSNBRG00000000670	upf1	100	89.838	ENSGMOG00000007541	upf1	100	90.108	Gadus_morhua
ENSNBRG00000000670	upf1	100	89.750	ENSGALG00000003220	UPF1	100	89.615	Gallus_gallus
ENSNBRG00000000670	upf1	100	91.182	ENSGAFG00000004831	upf1	100	91.364	Gambusia_affinis
ENSNBRG00000000670	upf1	62	94.868	ENSGAFG00000015443	-	84	94.868	Gambusia_affinis
ENSNBRG00000000670	upf1	100	90.476	ENSGAGG00000022217	UPF1	100	90.523	Gopherus_agassizii
ENSNBRG00000000670	upf1	95	91.483	ENSGGOG00000002608	UPF1	99	91.013	Gorilla_gorilla
ENSNBRG00000000670	upf1	89	97.436	ENSHBUG00000008939	upf1	97	97.436	Haplochromis_burtoni
ENSNBRG00000000670	upf1	90	100.000	ENSHBUG00000014694	upf1	100	100.000	Haplochromis_burtoni
ENSNBRG00000000670	upf1	100	88.546	ENSHGLG00000010900	UPF1	100	88.584	Heterocephalus_glaber_female
ENSNBRG00000000670	upf1	95	88.826	ENSHGLG00100005904	UPF1	96	88.773	Heterocephalus_glaber_male
ENSNBRG00000000670	upf1	100	91.000	ENSHCOG00000008918	upf1	100	90.950	Hippocampus_comes
ENSNBRG00000000670	upf1	100	93.000	ENSIPUG00000005108	UPF1	100	93.032	Ictalurus_punctatus
ENSNBRG00000000670	upf1	100	89.413	ENSSTOG00000009196	UPF1	100	88.978	Ictidomys_tridecemlineatus
ENSNBRG00000000670	upf1	100	88.918	ENSJJAG00000023151	Upf1	100	88.485	Jaculus_jaculus
ENSNBRG00000000670	upf1	100	91.099	ENSKMAG00000004962	upf1	100	91.099	Kryptolebias_marmoratus
ENSNBRG00000000670	upf1	100	93.351	ENSLBEG00000014862	upf1	100	93.531	Labrus_bergylta
ENSNBRG00000000670	upf1	100	91.198	ENSLBEG00000027848	-	100	91.198	Labrus_bergylta
ENSNBRG00000000670	upf1	63	89.900	ENSLACG00000008482	UPF1	100	89.331	Latimeria_chalumnae
ENSNBRG00000000670	upf1	100	92.091	ENSLOCG00000002072	upf1	100	92.091	Lepisosteus_oculatus
ENSNBRG00000000670	upf1	100	88.614	ENSLAFG00000014963	UPF1	100	88.564	Loxodonta_africana
ENSNBRG00000000670	upf1	100	89.175	ENSMFAG00000037748	UPF1	100	88.830	Macaca_fascicularis
ENSNBRG00000000670	upf1	100	88.938	ENSMMUG00000023286	UPF1	100	88.594	Macaca_mulatta
ENSNBRG00000000670	upf1	100	89.175	ENSMNEG00000000046	UPF1	100	88.830	Macaca_nemestrina
ENSNBRG00000000670	upf1	95	90.530	ENSMLEG00000028404	UPF1	99	90.066	Mandrillus_leucophaeus
ENSNBRG00000000670	upf1	100	93.004	ENSMAMG00000006229	upf1	100	93.638	Mastacembelus_armatus
ENSNBRG00000000670	upf1	100	91.289	ENSMAMG00000006231	-	100	91.289	Mastacembelus_armatus
ENSNBRG00000000670	upf1	100	96.754	ENSMZEG00005003489	upf1	100	96.754	Maylandia_zebra
ENSNBRG00000000670	upf1	100	91.379	ENSMZEG00005016386	-	100	91.379	Maylandia_zebra
ENSNBRG00000000670	upf1	95	90.445	ENSMGAG00000004745	UPF1	100	90.399	Meleagris_gallopavo
ENSNBRG00000000670	upf1	95	90.341	ENSMAUG00000011398	Upf1	95	89.782	Mesocricetus_auratus
ENSNBRG00000000670	upf1	100	89.502	ENSMICG00000001659	UPF1	100	89.156	Microcebus_murinus
ENSNBRG00000000670	upf1	100	88.761	ENSMOCG00000005699	Upf1	100	88.417	Microtus_ochrogaster
ENSNBRG00000000670	upf1	100	93.619	ENSMMOG00000007881	upf1	100	93.984	Mola_mola
ENSNBRG00000000670	upf1	95	88.612	ENSMMOG00000007537	-	99	88.612	Mola_mola
ENSNBRG00000000670	upf1	100	88.664	ENSMODG00000003689	UPF1	100	88.791	Monodelphis_domestica
ENSNBRG00000000670	upf1	100	90.407	ENSMALG00000018100	-	100	90.407	Monopterus_albus
ENSNBRG00000000670	upf1	100	93.801	ENSMALG00000000144	upf1	100	94.257	Monopterus_albus
ENSNBRG00000000670	upf1	100	89.544	MGP_CAROLIEiJ_G0031142	Upf1	100	89.107	Mus_caroli
ENSNBRG00000000670	upf1	100	89.544	ENSMUSG00000058301	Upf1	100	89.107	Mus_musculus
ENSNBRG00000000670	upf1	100	89.544	MGP_PahariEiJ_G0021607	Upf1	100	89.107	Mus_pahari
ENSNBRG00000000670	upf1	100	89.544	MGP_SPRETEiJ_G0032260	Upf1	100	89.107	Mus_spretus
ENSNBRG00000000670	upf1	100	89.591	ENSMPUG00000015516	UPF1	100	89.244	Mustela_putorius_furo
ENSNBRG00000000670	upf1	99	89.464	ENSMLUG00000012122	UPF1	99	89.117	Myotis_lucifugus
ENSNBRG00000000670	upf1	100	88.350	ENSNGAG00000024107	Upf1	100	87.919	Nannospalax_galili
ENSNBRG00000000670	upf1	95	84.848	ENSNLEG00000006062	UPF1	99	84.390	Nomascus_leucogenys
ENSNBRG00000000670	upf1	83	83.107	ENSMEUG00000014146	-	83	82.941	Notamacropus_eugenii
ENSNBRG00000000670	upf1	95	84.976	ENSOPRG00000014018	UPF1	99	84.226	Ochotona_princeps
ENSNBRG00000000670	upf1	100	89.776	ENSODEG00000012426	UPF1	100	89.247	Octodon_degus
ENSNBRG00000000670	upf1	100	91.379	ENSONIG00000012729	-	100	91.379	Oreochromis_niloticus
ENSNBRG00000000670	upf1	100	96.483	ENSONIG00000010452	upf1	100	96.483	Oreochromis_niloticus
ENSNBRG00000000670	upf1	100	88.781	ENSOANG00000004568	UPF1	100	88.339	Ornithorhynchus_anatinus
ENSNBRG00000000670	upf1	100	91.131	ENSORLG00000008453	upf1	100	90.934	Oryzias_latipes
ENSNBRG00000000670	upf1	100	91.049	ENSORLG00020014758	upf1	100	90.851	Oryzias_latipes_hni
ENSNBRG00000000670	upf1	100	91.049	ENSORLG00015010165	upf1	100	90.851	Oryzias_latipes_hsok
ENSNBRG00000000670	upf1	100	91.493	ENSOMEG00000003665	upf1	100	91.289	Oryzias_melastigma
ENSNBRG00000000670	upf1	100	89.502	ENSOGAG00000012866	UPF1	100	89.156	Otolemur_garnettii
ENSNBRG00000000670	upf1	96	87.718	ENSOARG00000010739	UPF1	100	87.179	Ovis_aries
ENSNBRG00000000670	upf1	95	90.472	ENSPPAG00000043884	UPF1	96	90.009	Pan_paniscus
ENSNBRG00000000670	upf1	100	88.722	ENSPPRG00000023470	UPF1	100	88.380	Panthera_pardus
ENSNBRG00000000670	upf1	95	89.494	ENSPTIG00000010159	UPF1	99	89.027	Panthera_tigris_altaica
ENSNBRG00000000670	upf1	100	89.175	ENSPTRG00000010721	UPF1	100	88.830	Pan_troglodytes
ENSNBRG00000000670	upf1	100	89.175	ENSPANG00000008847	UPF1	100	88.830	Papio_anubis
ENSNBRG00000000670	upf1	91	94.183	ENSPKIG00000006069	upf1	95	94.908	Paramormyrops_kingsleyae
ENSNBRG00000000670	upf1	69	89.091	ENSPSIG00000009491	UPF1	100	89.020	Pelodiscus_sinensis
ENSNBRG00000000670	upf1	100	91.379	ENSPMGG00000017327	upf1	100	91.667	Periophthalmus_magnuspinnatus
ENSNBRG00000000670	upf1	100	88.761	ENSPEMG00000001085	Upf1	100	88.329	Peromyscus_maniculatus_bairdii
ENSNBRG00000000670	upf1	100	85.366	ENSPMAG00000001206	upf1	100	85.366	Petromyzon_marinus
ENSNBRG00000000670	upf1	100	90.027	ENSPCIG00000006156	UPF1	100	90.072	Phascolarctos_cinereus
ENSNBRG00000000670	upf1	100	91.182	ENSPLAG00000016232	-	100	91.364	Poecilia_latipinna
ENSNBRG00000000670	upf1	100	92.335	ENSPLAG00000018155	-	100	91.418	Poecilia_latipinna
ENSNBRG00000000670	upf1	100	91.099	ENSPMEG00000016319	-	100	91.281	Poecilia_mexicana
ENSNBRG00000000670	upf1	100	93.522	ENSPMEG00000011443	-	100	93.522	Poecilia_mexicana
ENSNBRG00000000670	upf1	100	91.091	ENSPREG00000011247	-	100	91.273	Poecilia_reticulata
ENSNBRG00000000670	upf1	100	92.169	ENSPREG00000009940	upf1	100	91.434	Poecilia_reticulata
ENSNBRG00000000670	upf1	100	83.834	ENSPPYG00000009752	UPF1	100	82.792	Pongo_abelii
ENSNBRG00000000670	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSNBRG00000000670	upf1	100	89.194	ENSPCOG00000023813	UPF1	100	88.850	Propithecus_coquereli
ENSNBRG00000000670	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSNBRG00000000670	upf1	100	91.379	ENSPNYG00000016731	-	100	91.379	Pundamilia_nyererei
ENSNBRG00000000670	upf1	100	96.754	ENSPNYG00000003694	upf1	100	96.754	Pundamilia_nyererei
ENSNBRG00000000670	upf1	100	92.909	ENSPNAG00000025614	upf1	100	92.760	Pygocentrus_nattereri
ENSNBRG00000000670	upf1	100	89.544	ENSRNOG00000020134	Upf1	100	89.107	Rattus_norvegicus
ENSNBRG00000000670	upf1	95	88.163	ENSRBIG00000013894	UPF1	98	90.533	Rhinopithecus_bieti
ENSNBRG00000000670	upf1	95	90.530	ENSRROG00000040935	UPF1	98	90.533	Rhinopithecus_roxellana
ENSNBRG00000000670	upf1	75	56.916	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSNBRG00000000670	upf1	94	90.521	ENSSBOG00000023632	UPF1	96	90.057	Saimiri_boliviensis_boliviensis
ENSNBRG00000000670	upf1	95	90.832	ENSSHAG00000010499	UPF1	100	90.788	Sarcophilus_harrisii
ENSNBRG00000000670	upf1	100	91.916	ENSSFOG00015021095	upf1	100	91.931	Scleropages_formosus
ENSNBRG00000000670	upf1	100	91.379	ENSSMAG00000021018	-	100	91.379	Scophthalmus_maximus
ENSNBRG00000000670	upf1	100	92.460	ENSSMAG00000005055	upf1	100	92.819	Scophthalmus_maximus
ENSNBRG00000000670	upf1	100	93.184	ENSSDUG00000013320	upf1	100	93.817	Seriola_dumerili
ENSNBRG00000000670	upf1	100	91.470	ENSSDUG00000009629	-	100	91.470	Seriola_dumerili
ENSNBRG00000000670	upf1	100	91.470	ENSSLDG00000006878	-	100	91.470	Seriola_lalandi_dorsalis
ENSNBRG00000000670	upf1	100	94.027	ENSSLDG00000020868	upf1	100	94.575	Seriola_lalandi_dorsalis
ENSNBRG00000000670	upf1	100	90.036	ENSSPUG00000010538	UPF1	100	90.081	Sphenodon_punctatus
ENSNBRG00000000670	upf1	100	93.455	ENSSPAG00000000003	upf1	100	92.364	Stegastes_partitus
ENSNBRG00000000670	upf1	100	91.545	ENSSPAG00000011521	-	100	91.545	Stegastes_partitus
ENSNBRG00000000670	upf1	100	89.741	ENSSSCG00000039301	UPF1	99	91.031	Sus_scrofa
ENSNBRG00000000670	upf1	83	87.340	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSNBRG00000000670	upf1	100	90.636	ENSTRUG00000005131	-	100	90.736	Takifugu_rubripes
ENSNBRG00000000670	upf1	100	92.974	ENSTRUG00000000150	upf1	100	92.721	Takifugu_rubripes
ENSNBRG00000000670	upf1	100	86.084	ENSTTRG00000011544	UPF1	100	85.651	Tursiops_truncatus
ENSNBRG00000000670	upf1	100	89.591	ENSUAMG00000007093	UPF1	100	89.244	Ursus_americanus
ENSNBRG00000000670	upf1	95	91.595	ENSUMAG00000006652	UPF1	99	91.237	Ursus_maritimus
ENSNBRG00000000670	upf1	100	89.591	ENSVVUG00000007797	UPF1	100	89.244	Vulpes_vulpes
ENSNBRG00000000670	upf1	100	77.768	ENSXETG00000013602	upf1	100	77.265	Xenopus_tropicalis
ENSNBRG00000000670	upf1	94	91.262	ENSXCOG00000005764	-	99	91.288	Xiphophorus_couchianus
ENSNBRG00000000670	upf1	97	92.170	ENSXCOG00000015275	-	96	91.792	Xiphophorus_couchianus
ENSNBRG00000000670	upf1	100	91.190	ENSXMAG00000002540	-	100	91.371	Xiphophorus_maculatus
ENSNBRG00000000670	upf1	100	92.245	ENSXMAG00000001703	-	100	91.880	Xiphophorus_maculatus