EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000000813 (Gene tree)
Gene ID: 102797410
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specificity factor subunit 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 17716 bases
Position: chrJH422424.1:1175843-1193558
Accession: 102797410
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000001068	CPSF_A	PF03178.15	2.5e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000001121	-	4104	XM_006806059	ENSNBRP00000001068	1367 (aa)	XP_006806122	-

Gene Model

Click here to download ENSNBRG00000000813's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000000813's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000000813	cpsf1	100	74.845	ENSG00000071894	CPSF1	100	79.167	Homo_sapiens
ENSNBRG00000000813	cpsf1	100	85.346	ENSAPOG00000019621	cpsf1	100	85.617	Acanthochromis_polyacanthus
ENSNBRG00000000813	cpsf1	96	74.476	ENSAMEG00000005557	CPSF1	98	74.476	Ailuropoda_melanoleuca
ENSNBRG00000000813	cpsf1	100	86.875	ENSACIG00000006112	cpsf1	100	86.722	Amphilophus_citrinellus
ENSNBRG00000000813	cpsf1	100	85.960	ENSAOCG00000007120	cpsf1	100	86.029	Amphiprion_ocellaris
ENSNBRG00000000813	cpsf1	100	86.983	ENSAPEG00000005755	cpsf1	100	86.983	Amphiprion_percula
ENSNBRG00000000813	cpsf1	100	85.017	ENSATEG00000011097	cpsf1	100	85.017	Anabas_testudineus
ENSNBRG00000000813	cpsf1	92	70.178	ENSACAG00000009655	CPSF1	100	70.178	Anolis_carolinensis
ENSNBRG00000000813	cpsf1	100	75.035	ENSANAG00000036514	CPSF1	100	74.965	Aotus_nancymaae
ENSNBRG00000000813	cpsf1	100	89.800	ENSACLG00000012231	cpsf1	100	89.574	Astatotilapia_calliptera
ENSNBRG00000000813	cpsf1	100	75.852	ENSAMXG00000008485	cpsf1	100	75.852	Astyanax_mexicanus
ENSNBRG00000000813	cpsf1	100	73.388	ENSBTAG00000008355	CPSF1	100	74.497	Bos_taurus
ENSNBRG00000000813	cpsf1	100	31.062	WBGene00022301	cpsf-1	99	41.076	Caenorhabditis_elegans
ENSNBRG00000000813	cpsf1	100	74.965	ENSCJAG00000021421	CPSF1	100	74.965	Callithrix_jacchus
ENSNBRG00000000813	cpsf1	96	76.139	ENSCAFG00000001600	CPSF1	100	74.304	Canis_familiaris
ENSNBRG00000000813	cpsf1	100	74.897	ENSCAFG00020020821	CPSF1	100	74.828	Canis_lupus_dingo
ENSNBRG00000000813	cpsf1	100	71.409	ENSCHIG00000015833	CPSF1	100	71.528	Capra_hircus
ENSNBRG00000000813	cpsf1	100	75.173	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSNBRG00000000813	cpsf1	96	74.946	ENSCAPG00000014921	CPSF1	98	74.946	Cavia_aperea
ENSNBRG00000000813	cpsf1	100	73.582	ENSCPOG00000011448	CPSF1	100	73.582	Cavia_porcellus
ENSNBRG00000000813	cpsf1	100	74.965	ENSCCAG00000037658	CPSF1	100	79.358	Cebus_capucinus
ENSNBRG00000000813	cpsf1	100	74.965	ENSCATG00000037234	CPSF1	100	79.167	Cercocebus_atys
ENSNBRG00000000813	cpsf1	100	74.948	ENSCLAG00000012166	CPSF1	100	74.948	Chinchilla_lanigera
ENSNBRG00000000813	cpsf1	100	75.035	ENSCSAG00000008502	CPSF1	100	75.035	Chlorocebus_sabaeus
ENSNBRG00000000813	cpsf1	99	76.536	ENSCPBG00000018910	CPSF1	96	76.430	Chrysemys_picta_bellii
ENSNBRG00000000813	cpsf1	96	46.822	ENSCING00000000514	-	100	46.822	Ciona_intestinalis
ENSNBRG00000000813	cpsf1	99	47.467	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSNBRG00000000813	cpsf1	96	73.396	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSNBRG00000000813	cpsf1	100	74.810	ENSCGRG00001016344	Cpsf1	100	74.810	Cricetulus_griseus_chok1gshd
ENSNBRG00000000813	cpsf1	100	73.218	ENSCGRG00000003118	Cpsf1	100	73.218	Cricetulus_griseus_crigri
ENSNBRG00000000813	cpsf1	100	84.034	ENSCSEG00000013464	cpsf1	100	83.986	Cynoglossus_semilaevis
ENSNBRG00000000813	cpsf1	84	89.247	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSNBRG00000000813	cpsf1	100	81.875	ENSDARG00000034178	cpsf1	100	81.875	Danio_rerio
ENSNBRG00000000813	cpsf1	54	73.913	ENSDNOG00000043654	CPSF1	94	73.913	Dasypus_novemcinctus
ENSNBRG00000000813	cpsf1	96	75.506	ENSDORG00000006278	Cpsf1	98	75.506	Dipodomys_ordii
ENSNBRG00000000813	cpsf1	100	42.925	FBgn0024698	Cpsf160	100	42.886	Drosophila_melanogaster
ENSNBRG00000000813	cpsf1	79	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSNBRG00000000813	cpsf1	100	75.069	ENSEASG00005010774	CPSF1	100	75.000	Equus_asinus_asinus
ENSNBRG00000000813	cpsf1	100	75.000	ENSECAG00000022209	CPSF1	100	74.931	Equus_caballus
ENSNBRG00000000813	cpsf1	100	74.810	ENSEEUG00000000471	CPSF1	100	74.810	Erinaceus_europaeus
ENSNBRG00000000813	cpsf1	100	80.645	ENSELUG00000012271	cpsf1	100	81.392	Esox_lucius
ENSNBRG00000000813	cpsf1	100	75.069	ENSFDAG00000016060	CPSF1	100	75.069	Fukomys_damarensis
ENSNBRG00000000813	cpsf1	100	83.635	ENSFHEG00000016801	cpsf1	100	83.635	Fundulus_heteroclitus
ENSNBRG00000000813	cpsf1	100	82.536	ENSGMOG00000000796	cpsf1	100	82.723	Gadus_morhua
ENSNBRG00000000813	cpsf1	95	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSNBRG00000000813	cpsf1	100	84.022	ENSGACG00000008703	cpsf1	100	84.160	Gasterosteus_aculeatus
ENSNBRG00000000813	cpsf1	100	73.550	ENSGAGG00000004276	CPSF1	98	76.692	Gopherus_agassizii
ENSNBRG00000000813	cpsf1	100	75.017	ENSGGOG00000016185	CPSF1	100	79.167	Gorilla_gorilla
ENSNBRG00000000813	cpsf1	100	91.474	ENSHBUG00000018900	cpsf1	100	91.474	Haplochromis_burtoni
ENSNBRG00000000813	cpsf1	100	74.948	ENSHGLG00000016139	CPSF1	100	74.948	Heterocephalus_glaber_female
ENSNBRG00000000813	cpsf1	100	74.879	ENSHGLG00100009750	CPSF1	100	74.879	Heterocephalus_glaber_male
ENSNBRG00000000813	cpsf1	100	82.457	ENSHCOG00000018509	cpsf1	100	82.799	Hippocampus_comes
ENSNBRG00000000813	cpsf1	100	77.831	ENSIPUG00000011259	cpsf1	100	77.831	Ictalurus_punctatus
ENSNBRG00000000813	cpsf1	96	76.608	ENSSTOG00000009957	CPSF1	98	76.608	Ictidomys_tridecemlineatus
ENSNBRG00000000813	cpsf1	100	75.208	ENSJJAG00000023002	Cpsf1	100	75.208	Jaculus_jaculus
ENSNBRG00000000813	cpsf1	90	93.103	ENSKMAG00000001940	cpsf1	99	93.103	Kryptolebias_marmoratus
ENSNBRG00000000813	cpsf1	100	83.549	ENSLBEG00000003601	cpsf1	100	83.786	Labrus_bergylta
ENSNBRG00000000813	cpsf1	89	76.499	ENSLACG00000000233	CPSF1	100	66.574	Latimeria_chalumnae
ENSNBRG00000000813	cpsf1	100	78.123	ENSLOCG00000008484	cpsf1	100	78.123	Lepisosteus_oculatus
ENSNBRG00000000813	cpsf1	96	75.887	ENSLAFG00000022601	CPSF1	99	75.742	Loxodonta_africana
ENSNBRG00000000813	cpsf1	100	74.965	ENSMFAG00000037013	CPSF1	100	79.167	Macaca_fascicularis
ENSNBRG00000000813	cpsf1	100	75.209	ENSMMUG00000007380	CPSF1	100	79.167	Macaca_mulatta
ENSNBRG00000000813	cpsf1	96	76.049	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSNBRG00000000813	cpsf1	100	75.035	ENSMLEG00000043010	CPSF1	100	79.167	Mandrillus_leucophaeus
ENSNBRG00000000813	cpsf1	97	91.279	ENSMAMG00000003803	cpsf1	100	85.569	Mastacembelus_armatus
ENSNBRG00000000813	cpsf1	100	89.800	ENSMZEG00005001168	cpsf1	100	89.645	Maylandia_zebra
ENSNBRG00000000813	cpsf1	100	74.827	ENSMAUG00000003601	Cpsf1	100	74.827	Mesocricetus_auratus
ENSNBRG00000000813	cpsf1	100	74.948	ENSMICG00000015767	CPSF1	100	74.948	Microcebus_murinus
ENSNBRG00000000813	cpsf1	100	74.740	ENSMOCG00000022758	Cpsf1	100	74.740	Microtus_ochrogaster
ENSNBRG00000000813	cpsf1	100	86.620	ENSMMOG00000021245	cpsf1	100	86.319	Mola_mola
ENSNBRG00000000813	cpsf1	100	75.086	ENSMODG00000010755	CPSF1	100	75.017	Monodelphis_domestica
ENSNBRG00000000813	cpsf1	97	91.051	ENSMALG00000020545	cpsf1	94	91.051	Monopterus_albus
ENSNBRG00000000813	cpsf1	100	75.017	MGP_CAROLIEiJ_G0019936	Cpsf1	100	75.017	Mus_caroli
ENSNBRG00000000813	cpsf1	100	75.087	ENSMUSG00000034022	Cpsf1	100	75.087	Mus_musculus
ENSNBRG00000000813	cpsf1	100	75.087	MGP_PahariEiJ_G0019946	Cpsf1	100	75.087	Mus_pahari
ENSNBRG00000000813	cpsf1	100	75.087	MGP_SPRETEiJ_G0020839	Cpsf1	100	75.087	Mus_spretus
ENSNBRG00000000813	cpsf1	94	75.628	ENSMPUG00000006419	CPSF1	93	75.628	Mustela_putorius_furo
ENSNBRG00000000813	cpsf1	100	74.879	ENSNGAG00000022460	Cpsf1	100	74.879	Nannospalax_galili
ENSNBRG00000000813	cpsf1	85	69.369	ENSNLEG00000010633	-	100	79.167	Nomascus_leucogenys
ENSNBRG00000000813	cpsf1	80	86.047	ENSMEUG00000014922	CPSF1	84	86.047	Notamacropus_eugenii
ENSNBRG00000000813	cpsf1	61	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSNBRG00000000813	cpsf1	100	75.173	ENSODEG00000013995	CPSF1	100	75.173	Octodon_degus
ENSNBRG00000000813	cpsf1	100	90.069	ENSONIG00000007676	cpsf1	100	90.069	Oreochromis_niloticus
ENSNBRG00000000813	cpsf1	59	77.143	ENSOANG00000010716	CPSF1	89	77.143	Ornithorhynchus_anatinus
ENSNBRG00000000813	cpsf1	100	82.935	ENSORLG00000013544	cpsf1	92	93.004	Oryzias_latipes
ENSNBRG00000000813	cpsf1	100	83.003	ENSORLG00020021693	cpsf1	92	93.004	Oryzias_latipes_hni
ENSNBRG00000000813	cpsf1	100	83.003	ENSORLG00015009979	cpsf1	100	83.003	Oryzias_latipes_hsok
ENSNBRG00000000813	cpsf1	97	91.321	ENSOMEG00000011849	cpsf1	94	91.321	Oryzias_melastigma
ENSNBRG00000000813	cpsf1	100	74.965	ENSOGAG00000000315	CPSF1	100	74.965	Otolemur_garnettii
ENSNBRG00000000813	cpsf1	100	75.035	ENSPPAG00000019280	CPSF1	100	81.019	Pan_paniscus
ENSNBRG00000000813	cpsf1	100	75.035	ENSPTRG00000049288	-	100	81.019	Pan_troglodytes
ENSNBRG00000000813	cpsf1	100	73.759	ENSPTRG00000051253	-	100	81.019	Pan_troglodytes
ENSNBRG00000000813	cpsf1	96	76.049	ENSPANG00000015005	CPSF1	100	79.167	Papio_anubis
ENSNBRG00000000813	cpsf1	98	93.306	ENSPKIG00000002582	cpsf1	94	93.306	Paramormyrops_kingsleyae
ENSNBRG00000000813	cpsf1	100	75.224	ENSPCIG00000009035	CPSF1	100	75.155	Phascolarctos_cinereus
ENSNBRG00000000813	cpsf1	97	89.709	ENSPFOG00000012870	cpsf1	94	89.903	Poecilia_formosa
ENSNBRG00000000813	cpsf1	97	89.341	ENSPREG00000016307	cpsf1	94	89.535	Poecilia_reticulata
ENSNBRG00000000813	cpsf1	100	67.865	ENSPPYG00000018973	CPSF1	100	67.865	Pongo_abelii
ENSNBRG00000000813	cpsf1	90	84.659	ENSPCAG00000011541	CPSF1	93	84.659	Procavia_capensis
ENSNBRG00000000813	cpsf1	100	71.607	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSNBRG00000000813	cpsf1	90	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSNBRG00000000813	cpsf1	100	90.207	ENSPNYG00000004906	cpsf1	100	90.207	Pundamilia_nyererei
ENSNBRG00000000813	cpsf1	100	78.337	ENSPNAG00000024395	cpsf1	100	78.407	Pygocentrus_nattereri
ENSNBRG00000000813	cpsf1	100	74.983	ENSRNOG00000030705	Cpsf1	100	74.983	Rattus_norvegicus
ENSNBRG00000000813	cpsf1	100	74.931	ENSRBIG00000044907	CPSF1	100	79.630	Rhinopithecus_bieti
ENSNBRG00000000813	cpsf1	100	75.000	ENSRROG00000044861	CPSF1	100	79.630	Rhinopithecus_roxellana
ENSNBRG00000000813	cpsf1	96	75.832	ENSSBOG00000027177	CPSF1	99	75.832	Saimiri_boliviensis_boliviensis
ENSNBRG00000000813	cpsf1	100	75.086	ENSSHAG00000006500	CPSF1	100	75.017	Sarcophilus_harrisii
ENSNBRG00000000813	cpsf1	100	80.193	ENSSFOG00015004606	cpsf1	100	83.103	Scleropages_formosus
ENSNBRG00000000813	cpsf1	97	90.698	ENSSMAG00000020547	cpsf1	100	84.500	Scophthalmus_maximus
ENSNBRG00000000813	cpsf1	100	88.640	ENSSDUG00000001100	cpsf1	100	88.174	Seriola_dumerili
ENSNBRG00000000813	cpsf1	100	88.359	ENSSLDG00000003619	cpsf1	100	88.289	Seriola_lalandi_dorsalis
ENSNBRG00000000813	cpsf1	89	71.797	ENSSARG00000003643	CPSF1	92	71.797	Sorex_araneus
ENSNBRG00000000813	cpsf1	96	77.440	ENSSPUG00000014396	CPSF1	100	77.315	Sphenodon_punctatus
ENSNBRG00000000813	cpsf1	97	91.085	ENSSPAG00000005349	cpsf1	100	86.005	Stegastes_partitus
ENSNBRG00000000813	cpsf1	100	74.102	ENSSSCG00000005906	CPSF1	100	74.033	Sus_scrofa
ENSNBRG00000000813	cpsf1	96	83.958	ENSTRUG00000013134	cpsf1	99	83.958	Takifugu_rubripes
ENSNBRG00000000813	cpsf1	100	84.304	ENSTNIG00000014027	cpsf1	100	84.304	Tetraodon_nigroviridis
ENSNBRG00000000813	cpsf1	69	87.611	ENSTBEG00000001756	CPSF1	80	87.611	Tupaia_belangeri
ENSNBRG00000000813	cpsf1	89	79.066	ENSTTRG00000001937	CPSF1	90	79.239	Tursiops_truncatus
ENSNBRG00000000813	cpsf1	96	76.049	ENSUAMG00000006476	CPSF1	97	76.049	Ursus_americanus
ENSNBRG00000000813	cpsf1	100	84.104	ENSXCOG00000003608	cpsf1	100	83.880	Xiphophorus_couchianus
ENSNBRG00000000813	cpsf1	100	83.194	ENSXMAG00000005798	cpsf1	100	82.962	Xiphophorus_maculatus