EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000001232 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 3537 bases
Position: chrJH422295.1:4786666-4790202
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000001490	RRM_1	PF00076.22	4.3e-49	1	3
ENSNBRP00000001490	RRM_1	PF00076.22	4.3e-49	2	3
ENSNBRP00000001490	RRM_1	PF00076.22	4.3e-49	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000001552	-	1893	-	ENSNBRP00000001490	354 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000001232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000001232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000001232	ncl	94	100.000	ENSNBRG00000000146	-	99	100.000
ENSNBRG00000001232	ncl	74	32.353	ENSNBRG00000003068	-	65	33.088
ENSNBRG00000001232	ncl	76	32.941	ENSNBRG00000004605	dazap1	52	33.735
ENSNBRG00000001232	ncl	62	32.192	ENSNBRG00000016633	pabpc1l	65	32.877

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000001232	ncl	82	80.142	ENSATEG00000013343	ncl	50	80.142	Anabas_testudineus
ENSNBRG00000001232	ncl	91	45.299	ENSATEG00000019862	-	67	44.172	Anabas_testudineus
ENSNBRG00000001232	ncl	81	62.021	ENSAPLG00000012897	-	62	62.021	Anas_platyrhynchos
ENSNBRG00000001232	ncl	79	94.624	ENSACLG00000026031	ncl	76	94.624	Astatotilapia_calliptera
ENSNBRG00000001232	ncl	79	68.641	ENSAMXG00000001647	ncl	77	68.990	Astyanax_mexicanus
ENSNBRG00000001232	ncl	73	49.321	ENSCHIG00000003401	-	52	49.107	Capra_hircus
ENSNBRG00000001232	ncl	82	76.027	ENSCSEG00000015089	ncl	57	76.027	Cynoglossus_semilaevis
ENSNBRG00000001232	ncl	81	72.792	ENSDARG00000002710	ncl	73	72.085	Danio_rerio
ENSNBRG00000001232	ncl	66	53.425	ENSDNOG00000040440	-	96	53.191	Dasypus_novemcinctus
ENSNBRG00000001232	ncl	79	48.929	ENSDNOG00000040257	-	57	48.057	Dasypus_novemcinctus
ENSNBRG00000001232	ncl	84	43.667	ENSDNOG00000031611	-	62	44.643	Dasypus_novemcinctus
ENSNBRG00000001232	ncl	82	50.508	ENSELUG00000022826	-	75	50.704	Esox_lucius
ENSNBRG00000001232	ncl	79	71.930	ENSELUG00000006033	ncl	51	71.154	Esox_lucius
ENSNBRG00000001232	ncl	82	78.014	ENSFHEG00000018000	ncl	61	76.596	Fundulus_heteroclitus
ENSNBRG00000001232	ncl	81	67.474	ENSGMOG00000001341	ncl	54	67.025	Gadus_morhua
ENSNBRG00000001232	ncl	99	73.889	ENSGACG00000008970	ncl	60	77.660	Gasterosteus_aculeatus
ENSNBRG00000001232	ncl	100	100.000	ENSHBUG00000006869	ncl	63	100.000	Haplochromis_burtoni
ENSNBRG00000001232	ncl	82	78.893	ENSHCOG00000010234	ncl	53	77.855	Hippocampus_comes
ENSNBRG00000001232	ncl	79	70.463	ENSIPUG00000024556	ncl	72	70.819	Ictalurus_punctatus
ENSNBRG00000001232	ncl	82	44.295	ENSLBEG00000014278	-	66	43.003	Labrus_bergylta
ENSNBRG00000001232	ncl	82	81.560	ENSLBEG00000019073	ncl	55	81.560	Labrus_bergylta
ENSNBRG00000001232	ncl	84	54.153	ENSLACG00000022167	-	60	54.804	Latimeria_chalumnae
ENSNBRG00000001232	ncl	79	66.431	ENSLACG00000009328	ncl	52	65.734	Latimeria_chalumnae
ENSNBRG00000001232	ncl	100	98.596	ENSMZEG00005017438	ncl	63	98.596	Maylandia_zebra
ENSNBRG00000001232	ncl	81	62.021	ENSMGAG00000008147	-	80	64.602	Meleagris_gallopavo
ENSNBRG00000001232	ncl	85	79.344	ENSMMOG00000008553	ncl	77	81.597	Mola_mola
ENSNBRG00000001232	ncl	85	76.812	ENSMALG00000014827	ncl	51	81.783	Monopterus_albus
ENSNBRG00000001232	ncl	80	43.154	ENSMPUG00000001663	-	57	43.154	Mustela_putorius_furo
ENSNBRG00000001232	ncl	82	61.210	ENSMEUG00000012335	-	50	60.777	Notamacropus_eugenii
ENSNBRG00000001232	ncl	100	100.000	ENSONIG00000012508	ncl	62	100.000	Oreochromis_niloticus
ENSNBRG00000001232	ncl	80	36.237	ENSONIG00000010631	-	71	36.396	Oreochromis_niloticus
ENSNBRG00000001232	ncl	80	62.642	ENSOANG00000008732	-	56	62.021	Ornithorhynchus_anatinus
ENSNBRG00000001232	ncl	82	78.369	ENSORLG00000007055	ncl	53	78.723	Oryzias_latipes
ENSNBRG00000001232	ncl	83	39.799	ENSORLG00000004645	-	61	40.989	Oryzias_latipes
ENSNBRG00000001232	ncl	81	40.000	ENSORLG00020003497	-	55	40.636	Oryzias_latipes_hni
ENSNBRG00000001232	ncl	81	40.753	ENSORLG00015006613	-	57	41.343	Oryzias_latipes_hsok
ENSNBRG00000001232	ncl	81	76.736	ENSORLG00015013815	ncl	79	78.472	Oryzias_latipes_hsok
ENSNBRG00000001232	ncl	83	39.216	ENSOMEG00000015864	-	62	39.792	Oryzias_melastigma
ENSNBRG00000001232	ncl	82	72.632	ENSPKIG00000002604	ncl	52	72.792	Paramormyrops_kingsleyae
ENSNBRG00000001232	ncl	83	63.668	ENSPSIG00000002361	-	50	63.542	Pelodiscus_sinensis
ENSNBRG00000001232	ncl	79	72.598	ENSPMGG00000004709	ncl	73	72.242	Periophthalmus_magnuspinnatus
ENSNBRG00000001232	ncl	100	98.873	ENSPNYG00000020494	ncl	63	98.873	Pundamilia_nyererei
ENSNBRG00000001232	ncl	82	55.319	ENSSHAG00000002702	-	57	51.703	Sarcophilus_harrisii
ENSNBRG00000001232	ncl	93	43.114	ENSSFOG00015013153	-	69	46.043	Scleropages_formosus
ENSNBRG00000001232	ncl	100	66.201	ENSSFOG00015008583	ncl	55	74.205	Scleropages_formosus
ENSNBRG00000001232	ncl	82	79.725	ENSSMAG00000021241	ncl	52	79.725	Scophthalmus_maximus
ENSNBRG00000001232	ncl	100	75.070	ENSSDUG00000006128	ncl	83	81.597	Seriola_dumerili
ENSNBRG00000001232	ncl	83	44.702	ENSSDUG00000010922	-	50	46.125	Seriola_dumerili
ENSNBRG00000001232	ncl	88	42.553	ENSSLDG00000015784	-	53	44.156	Seriola_lalandi_dorsalis
ENSNBRG00000001232	ncl	82	80.851	ENSSLDG00000002012	ncl	52	80.851	Seriola_lalandi_dorsalis
ENSNBRG00000001232	ncl	79	80.142	ENSSPAG00000002637	ncl	79	80.142	Stegastes_partitus
ENSNBRG00000001232	ncl	82	76.950	ENSTRUG00000008185	ncl	51	76.950	Takifugu_rubripes
ENSNBRG00000001232	ncl	82	58.681	ENSXCOG00000003524	ncl	84	58.681	Xiphophorus_couchianus
ENSNBRG00000001232	ncl	84	37.864	ENSXCOG00000007369	-	69	39.041	Xiphophorus_couchianus