EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000001237 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm7-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 1237 bases
Position: chrAFNY01114986.1:151-1387
Accession: 102793261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000001505	LSM	PF01423.22	1.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000001567	-	378	XM_006810897	ENSNBRP00000001505	125 (aa)	XP_006810960	-

Gene Model

Click here to download ENSNBRG00000001237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000001237's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000001237	-	81	100.000	ENSNBRG00000015770	lsm7	87	100.000
ENSNBRG00000001237	-	50	38.710	ENSNBRG00000008674	snrpg	71	38.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000001237	-	82	92.233	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSNBRG00000001237	-	81	93.069	ENSAPOG00000015573	lsm7	87	93.069	Acanthochromis_polyacanthus
ENSNBRG00000001237	-	82	92.233	ENSAMEG00000005484	LSM7	91	93.617	Ailuropoda_melanoleuca
ENSNBRG00000001237	-	78	100.000	ENSACIG00000006498	lsm7	77	100.000	Amphilophus_citrinellus
ENSNBRG00000001237	-	93	87.931	ENSAOCG00000001077	lsm7	92	99.010	Amphiprion_ocellaris
ENSNBRG00000001237	-	81	99.010	ENSAPEG00000000694	lsm7	100	97.087	Amphiprion_percula
ENSNBRG00000001237	-	100	83.200	ENSAPEG00000024447	lsm7	92	99.010	Amphiprion_percula
ENSNBRG00000001237	-	82	97.087	ENSATEG00000008557	lsm7	100	97.087	Anabas_testudineus
ENSNBRG00000001237	-	82	83.495	ENSANAG00000022222	-	91	85.106	Aotus_nancymaae
ENSNBRG00000001237	-	82	92.233	ENSANAG00000037196	-	91	94.681	Aotus_nancymaae
ENSNBRG00000001237	-	82	98.058	ENSACLG00000021021	lsm7	100	98.058	Astatotilapia_calliptera
ENSNBRG00000001237	-	82	95.146	ENSAMXG00000037622	lsm7	91	97.872	Astyanax_mexicanus
ENSNBRG00000001237	-	82	92.233	ENSBTAG00000004521	LSM7	91	94.681	Bos_taurus
ENSNBRG00000001237	-	80	58.000	WBGene00003081	lsm-7	89	58.065	Caenorhabditis_elegans
ENSNBRG00000001237	-	81	93.069	ENSCAFG00000019409	LSM7	91	93.617	Canis_familiaris
ENSNBRG00000001237	-	94	83.761	ENSCAFG00020018168	LSM7	86	83.761	Canis_lupus_dingo
ENSNBRG00000001237	-	82	93.204	ENSCHIG00000023663	LSM7	91	94.681	Capra_hircus
ENSNBRG00000001237	-	57	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSNBRG00000001237	-	81	94.059	ENSCPOG00000014025	LSM7	93	94.681	Cavia_porcellus
ENSNBRG00000001237	-	82	93.137	ENSCCAG00000035456	LSM7	92	94.681	Cebus_capucinus
ENSNBRG00000001237	-	82	92.233	ENSCATG00000023543	LSM7	91	94.681	Cercocebus_atys
ENSNBRG00000001237	-	82	92.233	ENSCLAG00000011635	LSM7	91	94.681	Chinchilla_lanigera
ENSNBRG00000001237	-	82	92.233	ENSCSAG00000011599	LSM7	91	94.681	Chlorocebus_sabaeus
ENSNBRG00000001237	-	58	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSNBRG00000001237	-	77	81.250	ENSCING00000022134	-	92	81.319	Ciona_intestinalis
ENSNBRG00000001237	-	82	92.233	ENSCANG00000035525	LSM7	91	94.681	Colobus_angolensis_palliatus
ENSNBRG00000001237	-	82	91.262	ENSCGRG00001000807	-	91	93.617	Cricetulus_griseus_chok1gshd
ENSNBRG00000001237	-	73	82.418	ENSCGRG00001016005	-	84	83.133	Cricetulus_griseus_chok1gshd
ENSNBRG00000001237	-	81	93.069	ENSCGRG00000014355	-	90	93.617	Cricetulus_griseus_crigri
ENSNBRG00000001237	-	73	82.418	ENSCGRG00000006821	-	84	83.133	Cricetulus_griseus_crigri
ENSNBRG00000001237	-	90	90.265	ENSCSEG00000014900	lsm7	96	90.265	Cynoglossus_semilaevis
ENSNBRG00000001237	-	81	98.020	ENSCVAG00000021091	lsm7	94	98.020	Cyprinodon_variegatus
ENSNBRG00000001237	-	82	96.117	ENSDARG00000058328	lsm7	100	96.117	Danio_rerio
ENSNBRG00000001237	-	82	91.176	ENSDORG00000024460	Lsm7	92	92.553	Dipodomys_ordii
ENSNBRG00000001237	-	78	72.449	FBgn0261068	LSm7	84	73.913	Drosophila_melanogaster
ENSNBRG00000001237	-	81	91.089	ENSETEG00000012788	LSM7	92	91.489	Echinops_telfairi
ENSNBRG00000001237	-	81	85.149	ENSEBUG00000016992	lsm7	90	86.170	Eptatretus_burgeri
ENSNBRG00000001237	-	66	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSNBRG00000001237	-	84	86.667	ENSECAG00000001440	LSM7	60	90.426	Equus_caballus
ENSNBRG00000001237	-	82	91.262	ENSFCAG00000003445	LSM7	91	93.617	Felis_catus
ENSNBRG00000001237	-	81	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSNBRG00000001237	-	77	94.792	ENSFDAG00000007661	LSM7	98	94.681	Fukomys_damarensis
ENSNBRG00000001237	-	81	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSNBRG00000001237	-	82	96.117	ENSGMOG00000013320	lsm7	100	96.117	Gadus_morhua
ENSNBRG00000001237	-	82	96.117	ENSGAFG00000013902	lsm7	100	96.117	Gambusia_affinis
ENSNBRG00000001237	-	81	98.020	ENSGACG00000010390	lsm7	98	98.020	Gasterosteus_aculeatus
ENSNBRG00000001237	-	82	92.233	ENSGGOG00000010172	LSM7	91	94.681	Gorilla_gorilla
ENSNBRG00000001237	-	81	100.000	ENSHBUG00000004616	lsm7	100	98.058	Haplochromis_burtoni
ENSNBRG00000001237	-	82	92.233	ENSHGLG00000010587	LSM7	91	94.681	Heterocephalus_glaber_female
ENSNBRG00000001237	-	82	92.233	ENSHGLG00100000852	LSM7	91	94.681	Heterocephalus_glaber_male
ENSNBRG00000001237	-	81	100.000	ENSHCOG00000020252	lsm7	100	100.000	Hippocampus_comes
ENSNBRG00000001237	-	82	93.204	ENSIPUG00000024724	lsm7	91	95.745	Ictalurus_punctatus
ENSNBRG00000001237	-	82	94.118	ENSSTOG00000028372	LSM7	92	94.681	Ictidomys_tridecemlineatus
ENSNBRG00000001237	-	80	94.000	ENSJJAG00000001936	Lsm7	90	94.624	Jaculus_jaculus
ENSNBRG00000001237	-	82	96.117	ENSKMAG00000022151	lsm7	100	96.117	Kryptolebias_marmoratus
ENSNBRG00000001237	-	82	97.087	ENSLBEG00000005203	lsm7	100	97.087	Labrus_bergylta
ENSNBRG00000001237	-	74	95.699	ENSLACG00000015700	LSM7	91	95.745	Latimeria_chalumnae
ENSNBRG00000001237	-	81	96.040	ENSLOCG00000004356	lsm7	98	96.040	Lepisosteus_oculatus
ENSNBRG00000001237	-	81	94.059	ENSLAFG00000029302	LSM7	91	94.681	Loxodonta_africana
ENSNBRG00000001237	-	82	92.233	ENSMFAG00000044572	LSM7	91	94.681	Macaca_fascicularis
ENSNBRG00000001237	-	82	94.118	ENSMMUG00000000452	LSM7	92	94.681	Macaca_mulatta
ENSNBRG00000001237	-	82	92.233	ENSMNEG00000004393	LSM7	91	94.681	Macaca_nemestrina
ENSNBRG00000001237	-	81	94.059	ENSMLEG00000030852	LSM7	93	94.681	Mandrillus_leucophaeus
ENSNBRG00000001237	-	82	98.058	ENSMAMG00000005410	lsm7	100	98.058	Mastacembelus_armatus
ENSNBRG00000001237	-	82	98.058	ENSMZEG00005028055	lsm7	100	98.058	Maylandia_zebra
ENSNBRG00000001237	-	83	93.269	ENSMGAG00000000750	LSM7	81	96.809	Meleagris_gallopavo
ENSNBRG00000001237	-	81	93.069	ENSMAUG00000009276	Lsm7	91	93.617	Mesocricetus_auratus
ENSNBRG00000001237	-	82	92.233	ENSMICG00000028619	-	91	94.681	Microcebus_murinus
ENSNBRG00000001237	-	82	93.204	ENSMICG00000009988	-	91	94.681	Microcebus_murinus
ENSNBRG00000001237	-	82	91.262	ENSMOCG00000016925	Lsm7	91	93.617	Microtus_ochrogaster
ENSNBRG00000001237	-	82	97.087	ENSMMOG00000019645	lsm7	98	97.087	Mola_mola
ENSNBRG00000001237	-	82	93.204	ENSMODG00000004722	LSM7	91	95.745	Monodelphis_domestica
ENSNBRG00000001237	-	84	97.143	ENSMALG00000014511	lsm7	81	97.143	Monopterus_albus
ENSNBRG00000001237	-	82	91.176	MGP_CAROLIEiJ_G0015607	Lsm7	90	93.548	Mus_caroli
ENSNBRG00000001237	-	82	91.176	ENSMUSG00000035215	Lsm7	90	93.548	Mus_musculus
ENSNBRG00000001237	-	82	91.176	MGP_PahariEiJ_G0031020	Lsm7	90	93.548	Mus_pahari
ENSNBRG00000001237	-	82	91.176	MGP_SPRETEiJ_G0016425	Lsm7	90	93.548	Mus_spretus
ENSNBRG00000001237	-	84	83.810	ENSMLUG00000024002	-	86	89.247	Myotis_lucifugus
ENSNBRG00000001237	-	82	92.233	ENSMLUG00000013097	-	91	93.617	Myotis_lucifugus
ENSNBRG00000001237	-	82	90.291	ENSNGAG00000021637	Lsm7	91	92.553	Nannospalax_galili
ENSNBRG00000001237	-	82	92.233	ENSNLEG00000002265	LSM7	91	94.681	Nomascus_leucogenys
ENSNBRG00000001237	-	82	85.437	ENSODEG00000018769	-	91	87.234	Octodon_degus
ENSNBRG00000001237	-	82	72.816	ENSODEG00000008190	-	91	73.404	Octodon_degus
ENSNBRG00000001237	-	82	92.233	ENSODEG00000013590	-	91	94.681	Octodon_degus
ENSNBRG00000001237	-	84	97.143	ENSONIG00000001801	lsm7	91	97.143	Oreochromis_niloticus
ENSNBRG00000001237	-	93	88.793	ENSORLG00000023951	lsm7	100	97.087	Oryzias_latipes
ENSNBRG00000001237	-	82	98.058	ENSORLG00020022226	lsm7	100	97.087	Oryzias_latipes_hni
ENSNBRG00000001237	-	82	98.058	ENSORLG00015020044	lsm7	94	99.010	Oryzias_latipes_hsok
ENSNBRG00000001237	-	81	99.010	ENSOMEG00000012806	lsm7	100	97.087	Oryzias_melastigma
ENSNBRG00000001237	-	78	82.653	ENSOGAG00000024373	-	92	82.979	Otolemur_garnettii
ENSNBRG00000001237	-	81	92.079	ENSOGAG00000000144	-	92	92.553	Otolemur_garnettii
ENSNBRG00000001237	-	82	93.204	ENSOARG00000014013	LSM7	91	94.681	Ovis_aries
ENSNBRG00000001237	-	82	92.233	ENSPPAG00000026500	LSM7	91	94.681	Pan_paniscus
ENSNBRG00000001237	-	82	91.262	ENSPPRG00000008624	LSM7	91	93.617	Panthera_pardus
ENSNBRG00000001237	-	74	93.548	ENSPTIG00000016252	LSM7	91	93.617	Panthera_tigris_altaica
ENSNBRG00000001237	-	82	92.233	ENSPTRG00000010233	LSM7	91	94.681	Pan_troglodytes
ENSNBRG00000001237	-	82	92.233	ENSPANG00000020668	LSM7	91	94.681	Papio_anubis
ENSNBRG00000001237	-	81	97.030	ENSPKIG00000011325	lsm7	91	97.872	Paramormyrops_kingsleyae
ENSNBRG00000001237	-	90	86.726	ENSPSIG00000017149	LSM7	99	86.726	Pelodiscus_sinensis
ENSNBRG00000001237	-	82	97.087	ENSPMGG00000006498	lsm7	100	97.087	Periophthalmus_magnuspinnatus
ENSNBRG00000001237	-	82	94.118	ENSPCIG00000030454	LSM7	92	95.745	Phascolarctos_cinereus
ENSNBRG00000001237	-	92	90.435	ENSPFOG00000012467	lsm7	83	97.872	Poecilia_formosa
ENSNBRG00000001237	-	82	96.117	ENSPLAG00000000252	lsm7	94	97.030	Poecilia_latipinna
ENSNBRG00000001237	-	92	90.435	ENSPMEG00000000587	lsm7	94	97.030	Poecilia_mexicana
ENSNBRG00000001237	-	64	74.074	ENSPREG00000016718	lsm7	58	75.000	Poecilia_reticulata
ENSNBRG00000001237	-	94	64.103	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSNBRG00000001237	-	82	93.137	ENSPCOG00000017177	LSM7	92	94.681	Propithecus_coquereli
ENSNBRG00000001237	-	82	98.058	ENSPNYG00000006938	lsm7	100	98.058	Pundamilia_nyererei
ENSNBRG00000001237	-	82	97.059	ENSPNAG00000010141	lsm7	100	97.059	Pygocentrus_nattereri
ENSNBRG00000001237	-	82	92.157	ENSRNOG00000019552	Lsm7	90	94.624	Rattus_norvegicus
ENSNBRG00000001237	-	82	92.233	ENSRBIG00000035978	LSM7	91	94.681	Rhinopithecus_bieti
ENSNBRG00000001237	-	82	92.233	ENSRROG00000034044	LSM7	91	94.681	Rhinopithecus_roxellana
ENSNBRG00000001237	-	69	48.315	YNL147W	-	76	48.276	Saccharomyces_cerevisiae
ENSNBRG00000001237	-	82	92.233	ENSSBOG00000034899	LSM7	91	94.681	Saimiri_boliviensis_boliviensis
ENSNBRG00000001237	-	82	93.204	ENSSFOG00015006728	lsm7	91	95.745	Scleropages_formosus
ENSNBRG00000001237	-	81	99.010	ENSSMAG00000004195	lsm7	93	99.010	Scophthalmus_maximus
ENSNBRG00000001237	-	82	97.087	ENSSDUG00000001863	lsm7	100	97.087	Seriola_dumerili
ENSNBRG00000001237	-	82	97.087	ENSSLDG00000016339	lsm7	100	97.087	Seriola_lalandi_dorsalis
ENSNBRG00000001237	-	86	94.393	ENSSPAG00000015221	lsm7	100	97.087	Stegastes_partitus
ENSNBRG00000001237	-	82	93.137	ENSSSCG00000013463	LSM7	92	94.681	Sus_scrofa
ENSNBRG00000001237	-	81	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSNBRG00000001237	-	82	95.146	ENSTRUG00000022913	lsm7	91	97.872	Takifugu_rubripes
ENSNBRG00000001237	-	82	95.146	ENSTNIG00000015525	lsm7	91	97.872	Tetraodon_nigroviridis
ENSNBRG00000001237	-	56	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSNBRG00000001237	-	91	86.842	ENSUAMG00000000912	LSM7	78	93.617	Ursus_americanus
ENSNBRG00000001237	-	74	94.565	ENSUMAG00000006556	LSM7	73	94.624	Ursus_maritimus
ENSNBRG00000001237	-	56	95.714	ENSVVUG00000002640	LSM7	64	95.714	Vulpes_vulpes
ENSNBRG00000001237	-	81	94.059	ENSXETG00000022166	lsm7	93	94.681	Xenopus_tropicalis
ENSNBRG00000001237	-	81	98.020	ENSXCOG00000002572	lsm7	99	98.020	Xiphophorus_couchianus
ENSNBRG00000001237	-	82	97.087	ENSXMAG00000018630	lsm7	100	96.117	Xiphophorus_maculatus