EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000001712 (Gene tree)
Gene ID: 102794239
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 9789 bases
Position: chrJH422300.1:5757104-5766892
Accession: 102794239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000002156	DND1_DSRM	PF14709.7	1.6e-26	1	1
ENSNBRP00000002156	RRM_1	PF00076.22	5.2e-41	1	3
ENSNBRP00000002156	RRM_1	PF00076.22	5.2e-41	2	3
ENSNBRP00000002156	RRM_1	PF00076.22	5.2e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000002242	-	1815	XM_006793292	ENSNBRP00000002156	604 (aa)	XP_006793355	-

Gene Model

Click here to download ENSNBRG00000001712's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000001712's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000001712	a1cf	85	65.278	ENSNBRG00000000273	rbm46	80	65.278
ENSNBRG00000001712	a1cf	87	53.422	ENSNBRG00000015092	rbm47	76	50.657

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000001712	a1cf	100	77.521	ENSG00000148584	A1CF	100	89.109	Homo_sapiens
ENSNBRG00000001712	a1cf	100	84.514	ENSAPOG00000008259	a1cf	100	83.690	Acanthochromis_polyacanthus
ENSNBRG00000001712	a1cf	100	75.367	ENSAMEG00000000523	A1CF	100	74.062	Ailuropoda_melanoleuca
ENSNBRG00000001712	a1cf	100	95.199	ENSACIG00000008632	a1cf	100	95.199	Amphilophus_citrinellus
ENSNBRG00000001712	a1cf	100	86.820	ENSAOCG00000023744	a1cf	97	90.313	Amphiprion_ocellaris
ENSNBRG00000001712	a1cf	100	85.691	ENSAPEG00000009537	a1cf	100	85.691	Amphiprion_percula
ENSNBRG00000001712	a1cf	100	91.269	ENSATEG00000013720	a1cf	100	90.280	Anabas_testudineus
ENSNBRG00000001712	a1cf	100	77.162	ENSAPLG00000002964	A1CF	100	75.041	Anas_platyrhynchos
ENSNBRG00000001712	a1cf	100	77.851	ENSACAG00000015269	A1CF	100	76.033	Anolis_carolinensis
ENSNBRG00000001712	a1cf	100	78.017	ENSANAG00000019974	A1CF	100	76.033	Aotus_nancymaae
ENSNBRG00000001712	a1cf	100	96.026	ENSACLG00000017428	a1cf	100	96.026	Astatotilapia_calliptera
ENSNBRG00000001712	a1cf	100	75.527	ENSAMXG00000018180	a1cf	100	74.919	Astyanax_mexicanus
ENSNBRG00000001712	a1cf	100	78.182	ENSBTAG00000021195	A1CF	100	77.838	Bos_taurus
ENSNBRG00000001712	a1cf	100	76.835	ENSCJAG00000005045	A1CF	100	74.878	Callithrix_jacchus
ENSNBRG00000001712	a1cf	100	76.020	ENSCAFG00000015581	A1CF	100	74.715	Canis_familiaris
ENSNBRG00000001712	a1cf	100	76.020	ENSCAFG00020026421	A1CF	98	82.667	Canis_lupus_dingo
ENSNBRG00000001712	a1cf	100	77.651	ENSCHIG00000020411	A1CF	100	75.856	Capra_hircus
ENSNBRG00000001712	a1cf	94	77.758	ENSTSYG00000001755	A1CF	100	75.482	Carlito_syrichta
ENSNBRG00000001712	a1cf	100	73.761	ENSCAPG00000017386	A1CF	95	76.038	Cavia_aperea
ENSNBRG00000001712	a1cf	100	75.693	ENSCPOG00000009807	A1CF	100	73.246	Cavia_porcellus
ENSNBRG00000001712	a1cf	100	76.672	ENSCCAG00000018168	A1CF	100	74.551	Cebus_capucinus
ENSNBRG00000001712	a1cf	100	77.355	ENSCATG00000043715	A1CF	100	76.033	Cercocebus_atys
ENSNBRG00000001712	a1cf	100	75.693	ENSCLAG00000010424	A1CF	100	73.736	Chinchilla_lanigera
ENSNBRG00000001712	a1cf	100	76.346	ENSCSAG00000007032	A1CF	100	75.041	Chlorocebus_sabaeus
ENSNBRG00000001712	a1cf	98	74.749	ENSCHOG00000009089	A1CF	98	72.742	Choloepus_hoffmanni
ENSNBRG00000001712	a1cf	100	76.672	ENSCPBG00000026464	A1CF	100	74.715	Chrysemys_picta_bellii
ENSNBRG00000001712	a1cf	100	76.509	ENSCANG00000038032	A1CF	100	75.204	Colobus_angolensis_palliatus
ENSNBRG00000001712	a1cf	100	75.693	ENSCGRG00001017413	A1cf	100	73.899	Cricetulus_griseus_chok1gshd
ENSNBRG00000001712	a1cf	100	74.797	ENSCGRG00000017332	A1cf	100	73.409	Cricetulus_griseus_crigri
ENSNBRG00000001712	a1cf	100	86.039	ENSCSEG00000002361	a1cf	100	86.688	Cynoglossus_semilaevis
ENSNBRG00000001712	a1cf	100	89.292	ENSCVAG00000010520	a1cf	100	89.127	Cyprinodon_variegatus
ENSNBRG00000001712	a1cf	100	82.645	ENSDARG00000002968	a1cf	100	81.818	Danio_rerio
ENSNBRG00000001712	a1cf	100	76.183	ENSDNOG00000002829	A1CF	100	74.225	Dasypus_novemcinctus
ENSNBRG00000001712	a1cf	82	85.507	ENSETEG00000012527	A1CF	81	85.507	Echinops_telfairi
ENSNBRG00000001712	a1cf	100	76.873	ENSEASG00005012924	A1CF	100	75.081	Equus_asinus_asinus
ENSNBRG00000001712	a1cf	100	76.384	ENSECAG00000010424	A1CF	100	74.593	Equus_caballus
ENSNBRG00000001712	a1cf	78	68.211	ENSEEUG00000000013	A1CF	97	66.594	Erinaceus_europaeus
ENSNBRG00000001712	a1cf	100	80.750	ENSELUG00000003159	a1cf	100	79.935	Esox_lucius
ENSNBRG00000001712	a1cf	100	76.529	ENSFCAG00000011179	A1CF	100	75.372	Felis_catus
ENSNBRG00000001712	a1cf	100	78.678	ENSFALG00000013183	A1CF	100	76.860	Ficedula_albicollis
ENSNBRG00000001712	a1cf	100	76.529	ENSFDAG00000019371	A1CF	100	74.545	Fukomys_damarensis
ENSNBRG00000001712	a1cf	100	84.020	ENSFHEG00000019652	a1cf	96	92.188	Fundulus_heteroclitus
ENSNBRG00000001712	a1cf	100	77.504	ENSGMOG00000018943	a1cf	100	76.190	Gadus_morhua
ENSNBRG00000001712	a1cf	96	76.701	ENSGALG00000003765	A1CF	96	75.345	Gallus_gallus
ENSNBRG00000001712	a1cf	100	82.537	ENSGAFG00000014868	a1cf	100	81.384	Gambusia_affinis
ENSNBRG00000001712	a1cf	100	86.504	ENSGACG00000010241	a1cf	100	85.366	Gasterosteus_aculeatus
ENSNBRG00000001712	a1cf	96	75.510	ENSGAGG00000016508	A1CF	98	73.469	Gopherus_agassizii
ENSNBRG00000001712	a1cf	100	76.509	ENSGGOG00000009670	A1CF	100	74.551	Gorilla_gorilla
ENSNBRG00000001712	a1cf	100	99.172	ENSHBUG00000021959	a1cf	100	99.172	Haplochromis_burtoni
ENSNBRG00000001712	a1cf	100	75.693	ENSHGLG00000008955	A1CF	100	74.062	Heterocephalus_glaber_female
ENSNBRG00000001712	a1cf	100	75.041	ENSHGLG00100000518	A1CF	100	73.409	Heterocephalus_glaber_male
ENSNBRG00000001712	a1cf	100	75.923	ENSHCOG00000017669	a1cf	100	77.207	Hippocampus_comes
ENSNBRG00000001712	a1cf	89	83.789	ENSIPUG00000010367	a1cf	96	82.878	Ictalurus_punctatus
ENSNBRG00000001712	a1cf	100	88.188	ENSKMAG00000006568	a1cf	100	86.731	Kryptolebias_marmoratus
ENSNBRG00000001712	a1cf	99	88.455	ENSLBEG00000020994	a1cf	99	87.317	Labrus_bergylta
ENSNBRG00000001712	a1cf	100	79.008	ENSLACG00000008061	A1CF	100	77.355	Latimeria_chalumnae
ENSNBRG00000001712	a1cf	100	81.077	ENSLOCG00000006302	a1cf	100	78.630	Lepisosteus_oculatus
ENSNBRG00000001712	a1cf	100	76.509	ENSLAFG00000015462	A1CF	100	76.183	Loxodonta_africana
ENSNBRG00000001712	a1cf	100	77.521	ENSMFAG00000035948	A1CF	100	76.198	Macaca_fascicularis
ENSNBRG00000001712	a1cf	100	77.521	ENSMMUG00000007077	A1CF	100	76.198	Macaca_mulatta
ENSNBRG00000001712	a1cf	100	77.521	ENSMNEG00000031454	A1CF	100	76.198	Macaca_nemestrina
ENSNBRG00000001712	a1cf	100	76.346	ENSMLEG00000037223	A1CF	100	75.041	Mandrillus_leucophaeus
ENSNBRG00000001712	a1cf	100	89.638	ENSMAMG00000010402	a1cf	100	88.322	Mastacembelus_armatus
ENSNBRG00000001712	a1cf	100	92.810	ENSMZEG00005013245	a1cf	100	92.810	Maylandia_zebra
ENSNBRG00000001712	a1cf	100	76.710	ENSMGAG00000001507	A1CF	100	74.919	Meleagris_gallopavo
ENSNBRG00000001712	a1cf	100	75.693	ENSMAUG00000007422	A1cf	100	74.062	Mesocricetus_auratus
ENSNBRG00000001712	a1cf	100	76.936	ENSMICG00000003377	A1CF	100	76.771	Microcebus_murinus
ENSNBRG00000001712	a1cf	100	76.346	ENSMOCG00000021536	A1cf	100	74.388	Microtus_ochrogaster
ENSNBRG00000001712	a1cf	100	78.913	ENSMMOG00000009422	a1cf	100	78.418	Mola_mola
ENSNBRG00000001712	a1cf	89	79.664	ENSMODG00000016478	A1CF	97	77.985	Monodelphis_domestica
ENSNBRG00000001712	a1cf	100	81.457	ENSMALG00000012992	a1cf	100	81.291	Monopterus_albus
ENSNBRG00000001712	a1cf	100	76.529	MGP_CAROLIEiJ_G0022873	A1cf	100	74.545	Mus_caroli
ENSNBRG00000001712	a1cf	100	76.529	ENSMUSG00000052595	A1cf	99	82.338	Mus_musculus
ENSNBRG00000001712	a1cf	100	75.868	MGP_PahariEiJ_G0014366	A1cf	100	73.884	Mus_pahari
ENSNBRG00000001712	a1cf	100	77.063	MGP_SPRETEiJ_G0023792	A1cf	100	75.083	Mus_spretus
ENSNBRG00000001712	a1cf	100	70.636	ENSMPUG00000016971	A1CF	100	69.005	Mustela_putorius_furo
ENSNBRG00000001712	a1cf	100	76.098	ENSMLUG00000016071	A1CF	100	74.715	Myotis_lucifugus
ENSNBRG00000001712	a1cf	100	76.346	ENSNGAG00000015136	A1cf	100	74.388	Nannospalax_galili
ENSNBRG00000001712	a1cf	100	76.998	ENSNLEG00000012028	A1CF	100	75.041	Nomascus_leucogenys
ENSNBRG00000001712	a1cf	94	77.933	ENSMEUG00000015909	A1CF	100	76.357	Notamacropus_eugenii
ENSNBRG00000001712	a1cf	88	68.889	ENSOPRG00000010667	A1CF	100	65.658	Ochotona_princeps
ENSNBRG00000001712	a1cf	100	98.675	ENSONIG00000019105	a1cf	100	98.675	Oreochromis_niloticus
ENSNBRG00000001712	a1cf	78	77.637	ENSOANG00000007360	A1CF	99	76.371	Ornithorhynchus_anatinus
ENSNBRG00000001712	a1cf	100	77.025	ENSOCUG00000011587	A1CF	100	75.041	Oryctolagus_cuniculus
ENSNBRG00000001712	a1cf	100	83.740	ENSORLG00000013342	a1cf	100	82.764	Oryzias_latipes
ENSNBRG00000001712	a1cf	100	85.552	ENSORLG00020000586	a1cf	100	84.903	Oryzias_latipes_hni
ENSNBRG00000001712	a1cf	100	85.552	ENSORLG00015018569	a1cf	100	84.903	Oryzias_latipes_hsok
ENSNBRG00000001712	a1cf	100	87.315	ENSOMEG00000013531	a1cf	100	85.997	Oryzias_melastigma
ENSNBRG00000001712	a1cf	100	75.041	ENSOGAG00000012884	A1CF	100	74.062	Otolemur_garnettii
ENSNBRG00000001712	a1cf	100	77.325	ENSOARG00000013695	A1CF	100	75.530	Ovis_aries
ENSNBRG00000001712	a1cf	97	75.421	ENSPPAG00000028115	A1CF	99	77.603	Pan_paniscus
ENSNBRG00000001712	a1cf	100	75.530	ENSPPRG00000012180	A1CF	100	74.388	Panthera_pardus
ENSNBRG00000001712	a1cf	100	75.530	ENSPTIG00000021223	A1CF	100	74.388	Panthera_tigris_altaica
ENSNBRG00000001712	a1cf	100	77.521	ENSPTRG00000002508	A1CF	100	75.537	Pan_troglodytes
ENSNBRG00000001712	a1cf	100	77.521	ENSPANG00000021988	A1CF	100	76.198	Papio_anubis
ENSNBRG00000001712	a1cf	100	80.914	ENSPKIG00000025176	a1cf	100	80.424	Paramormyrops_kingsleyae
ENSNBRG00000001712	a1cf	100	77.686	ENSPSIG00000010318	A1CF	100	76.033	Pelodiscus_sinensis
ENSNBRG00000001712	a1cf	98	71.549	ENSPMGG00000013359	a1cf	99	73.109	Periophthalmus_magnuspinnatus
ENSNBRG00000001712	a1cf	100	75.856	ENSPEMG00000015021	A1cf	100	73.899	Peromyscus_maniculatus_bairdii
ENSNBRG00000001712	a1cf	100	77.025	ENSPCIG00000002175	A1CF	100	76.694	Phascolarctos_cinereus
ENSNBRG00000001712	a1cf	100	87.967	ENSPFOG00000006683	a1cf	100	87.805	Poecilia_formosa
ENSNBRG00000001712	a1cf	100	87.967	ENSPFOG00000007437	-	100	87.805	Poecilia_formosa
ENSNBRG00000001712	a1cf	100	89.292	ENSPLAG00000001210	-	100	89.127	Poecilia_latipinna
ENSNBRG00000001712	a1cf	100	89.292	ENSPLAG00000000026	a1cf	100	89.127	Poecilia_latipinna
ENSNBRG00000001712	a1cf	100	81.623	ENSPMEG00000000921	a1cf	100	81.457	Poecilia_mexicana
ENSNBRG00000001712	a1cf	100	80.556	ENSPMEG00000015529	-	100	80.392	Poecilia_mexicana
ENSNBRG00000001712	a1cf	100	87.642	ENSPREG00000016298	a1cf	100	87.480	Poecilia_reticulata
ENSNBRG00000001712	a1cf	100	78.017	ENSPPYG00000002819	A1CF	100	76.033	Pongo_abelii
ENSNBRG00000001712	a1cf	80	60.788	ENSPCAG00000006463	A1CF	79	59.544	Procavia_capensis
ENSNBRG00000001712	a1cf	100	75.856	ENSPCOG00000024172	A1CF	100	75.530	Propithecus_coquereli
ENSNBRG00000001712	a1cf	100	98.203	ENSPNYG00000017944	a1cf	100	98.203	Pundamilia_nyererei
ENSNBRG00000001712	a1cf	100	84.539	ENSPNAG00000007704	a1cf	100	83.690	Pygocentrus_nattereri
ENSNBRG00000001712	a1cf	100	77.355	ENSRNOG00000033195	A1cf	100	75.372	Rattus_norvegicus
ENSNBRG00000001712	a1cf	100	71.220	ENSRBIG00000042892	A1CF	100	74.038	Rhinopithecus_bieti
ENSNBRG00000001712	a1cf	100	76.509	ENSRROG00000041398	A1CF	100	75.204	Rhinopithecus_roxellana
ENSNBRG00000001712	a1cf	100	77.325	ENSSBOG00000021930	A1CF	100	75.385	Saimiri_boliviensis_boliviensis
ENSNBRG00000001712	a1cf	100	78.017	ENSSHAG00000005096	A1CF	100	76.033	Sarcophilus_harrisii
ENSNBRG00000001712	a1cf	100	83.690	ENSSFOG00015011774	a1cf	100	83.031	Scleropages_formosus
ENSNBRG00000001712	a1cf	100	89.560	ENSSMAG00000013271	a1cf	100	87.765	Scophthalmus_maximus
ENSNBRG00000001712	a1cf	100	88.780	ENSSDUG00000013930	a1cf	100	88.293	Seriola_dumerili
ENSNBRG00000001712	a1cf	100	83.775	ENSSLDG00000004290	a1cf	100	83.775	Seriola_lalandi_dorsalis
ENSNBRG00000001712	a1cf	95	69.686	ENSSARG00000005940	A1CF	95	69.338	Sorex_araneus
ENSNBRG00000001712	a1cf	97	73.826	ENSSPUG00000006797	A1CF	95	72.572	Sphenodon_punctatus
ENSNBRG00000001712	a1cf	100	77.977	ENSSSCG00000010431	A1CF	100	76.183	Sus_scrofa
ENSNBRG00000001712	a1cf	100	77.524	ENSTGUG00000005090	A1CF	100	75.407	Taeniopygia_guttata
ENSNBRG00000001712	a1cf	100	86.201	ENSTRUG00000001982	a1cf	100	84.903	Takifugu_rubripes
ENSNBRG00000001712	a1cf	100	86.062	ENSTNIG00000003580	a1cf	100	84.603	Tetraodon_nigroviridis
ENSNBRG00000001712	a1cf	97	73.038	ENSTTRG00000013190	A1CF	95	71.331	Tursiops_truncatus
ENSNBRG00000001712	a1cf	100	77.190	ENSUAMG00000020065	A1CF	100	75.041	Ursus_americanus
ENSNBRG00000001712	a1cf	100	75.693	ENSUMAG00000011162	A1CF	100	73.736	Ursus_maritimus
ENSNBRG00000001712	a1cf	87	75.236	ENSVPAG00000006130	A1CF	86	72.968	Vicugna_pacos
ENSNBRG00000001712	a1cf	100	77.521	ENSVVUG00000002504	A1CF	100	75.868	Vulpes_vulpes
ENSNBRG00000001712	a1cf	100	70.310	ENSXETG00000006611	a1cf	100	69.494	Xenopus_tropicalis
ENSNBRG00000001712	a1cf	100	90.774	ENSXCOG00000003302	a1cf	100	89.292	Xiphophorus_couchianus
ENSNBRG00000001712	a1cf	100	89.593	ENSXMAG00000016703	a1cf	100	88.130	Xiphophorus_maculatus