EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000002005 (Gene tree)
Gene ID: 102790493
Gene Symbol: polr2a
Alias: im:7136071
Full Name: DNA-directed RNA polymerase II subunit RPB1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 10273 bases
Position: chrJH422355.1:2344613-2354885
Accession: 102790493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000002578	RNA_pol_Rpb1_5	PF04998.17	2.2e-101	1	1
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	1	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	2	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	3	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	4	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	5	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	6	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	7	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	8	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	9	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	10	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	11	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	12	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	13	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	14	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	15	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	16	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	17	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	18	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	19	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	20	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	21	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	22	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	23	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	24	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	25	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	26	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	27	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	28	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	29	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	30	31
ENSNBRP00000002578	RNA_pol_Rpb1_R	PF05001.13	3.5e-29	31	31
ENSNBRP00000002578	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSNBRP00000002578	RNA_pol_Rpb1_2	PF00623.20	5.7e-75	1	1
ENSNBRP00000002578	RNA_pol_Rpb1_3	PF04983.18	2.8e-50	1	1
ENSNBRP00000002578	RNA_pol_Rpb1_1	PF04997.12	1.4e-108	1	1
ENSNBRP00000002578	RNA_pol_Rpb1_7	PF04990.12	1.8e-55	1	1
ENSNBRP00000002578	RNA_pol_Rpb1_6	PF04992.14	3.7e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000002671	-	5787	XM_006801730	ENSNBRP00000002578	1928 (aa)	XP_006801793	-

Gene Model

Click here to download ENSNBRG00000002005's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000002005's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000002005	polr2a	68	38.512	ENSNBRG00000014262	polr3a	93	38.037

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000002005	polr2a	82	96.340	ENSAPOG00000006552	polr2a	90	95.782	Acanthochromis_polyacanthus
ENSNBRG00000002005	polr2a	81	91.822	ENSAMEG00000016265	-	82	91.832	Ailuropoda_melanoleuca
ENSNBRG00000002005	polr2a	100	99.066	ENSACIG00000015982	polr2a	100	99.066	Amphilophus_citrinellus
ENSNBRG00000002005	polr2a	100	96.715	ENSAOCG00000004255	polr2a	100	94.917	Amphiprion_ocellaris
ENSNBRG00000002005	polr2a	100	98.963	ENSAPEG00000012623	polr2a	100	98.963	Amphiprion_percula
ENSNBRG00000002005	polr2a	100	98.755	ENSATEG00000019644	polr2a	100	98.755	Anabas_testudineus
ENSNBRG00000002005	polr2a	81	92.360	ENSACAG00000014561	POLR2A	82	92.370	Anolis_carolinensis
ENSNBRG00000002005	polr2a	81	94.469	ENSANAG00000020093	-	82	94.476	Aotus_nancymaae
ENSNBRG00000002005	polr2a	100	99.741	ENSACLG00000006735	polr2a	100	99.741	Astatotilapia_calliptera
ENSNBRG00000002005	polr2a	100	97.822	ENSAMXG00000020046	polr2a	100	97.822	Astyanax_mexicanus
ENSNBRG00000002005	polr2a	81	92.179	ENSBTAG00000046765	POLR2A	82	92.188	Bos_taurus
ENSNBRG00000002005	polr2a	81	92.117	ENSCAFG00000016532	POLR2A	99	91.569	Canis_familiaris
ENSNBRG00000002005	polr2a	81	93.706	ENSCAFG00020007929	-	81	93.714	Canis_lupus_dingo
ENSNBRG00000002005	polr2a	81	92.179	ENSCHIG00000027173	-	82	92.188	Capra_hircus
ENSNBRG00000002005	polr2a	92	92.051	ENSTSYG00000012803	-	82	94.476	Carlito_syrichta
ENSNBRG00000002005	polr2a	98	88.938	ENSCAPG00000001882	-	100	90.025	Cavia_aperea
ENSNBRG00000002005	polr2a	99	87.630	ENSCPOG00000014812	-	99	93.270	Cavia_porcellus
ENSNBRG00000002005	polr2a	81	94.469	ENSCCAG00000020938	-	82	94.476	Cebus_capucinus
ENSNBRG00000002005	polr2a	81	93.706	ENSCATG00000013680	-	82	93.714	Cercocebus_atys
ENSNBRG00000002005	polr2a	81	94.342	ENSCLAG00000012196	-	82	94.349	Chinchilla_lanigera
ENSNBRG00000002005	polr2a	81	83.405	ENSCSAG00000011644	-	82	83.426	Chlorocebus_sabaeus
ENSNBRG00000002005	polr2a	90	84.087	ENSCPBG00000012697	POLR2A	99	85.917	Chrysemys_picta_bellii
ENSNBRG00000002005	polr2a	98	75.503	ENSCING00000007884	-	99	76.040	Ciona_intestinalis
ENSNBRG00000002005	polr2a	98	75.062	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSNBRG00000002005	polr2a	81	92.826	ENSCANG00000010622	-	82	92.835	Colobus_angolensis_palliatus
ENSNBRG00000002005	polr2a	81	89.256	ENSCGRG00001003538	Polr2a	81	89.277	Cricetulus_griseus_chok1gshd
ENSNBRG00000002005	polr2a	81	90.949	ENSCGRG00000012105	Polr2a	85	90.960	Cricetulus_griseus_crigri
ENSNBRG00000002005	polr2a	99	97.561	ENSCSEG00000002635	polr2a	100	97.561	Cynoglossus_semilaevis
ENSNBRG00000002005	polr2a	100	96.490	ENSCVAG00000005156	polr2a	100	96.033	Cyprinodon_variegatus
ENSNBRG00000002005	polr2a	100	95.475	ENSDARG00000099966	polr2a	100	95.018	Danio_rerio
ENSNBRG00000002005	polr2a	81	88.758	ENSDNOG00000016482	-	82	88.772	Dasypus_novemcinctus
ENSNBRG00000002005	polr2a	81	94.469	ENSDORG00000008667	Polr2a	82	94.476	Dipodomys_ordii
ENSNBRG00000002005	polr2a	99	68.362	FBgn0003277	RpII215	99	74.471	Drosophila_melanogaster
ENSNBRG00000002005	polr2a	94	87.317	ENSETEG00000002540	-	87	87.500	Echinops_telfairi
ENSNBRG00000002005	polr2a	81	85.402	ENSEBUG00000013967	polr2a	82	84.764	Eptatretus_burgeri
ENSNBRG00000002005	polr2a	81	92.371	ENSEASG00005019114	-	82	92.381	Equus_asinus_asinus
ENSNBRG00000002005	polr2a	81	92.179	ENSECAG00000018485	POLR2A	82	92.188	Equus_caballus
ENSNBRG00000002005	polr2a	85	94.259	ENSEEUG00000001154	-	95	94.259	Erinaceus_europaeus
ENSNBRG00000002005	polr2a	88	95.016	ENSELUG00000014284	polr2a	84	95.016	Esox_lucius
ENSNBRG00000002005	polr2a	81	93.817	ENSFDAG00000008287	-	82	93.825	Fukomys_damarensis
ENSNBRG00000002005	polr2a	99	95.877	ENSFHEG00000001768	polr2a	99	94.727	Fundulus_heteroclitus
ENSNBRG00000002005	polr2a	99	90.422	ENSGMOG00000007725	polr2a	100	90.436	Gadus_morhua
ENSNBRG00000002005	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	95.037	Gambusia_affinis
ENSNBRG00000002005	polr2a	99	91.521	ENSGACG00000019366	polr2a	100	93.984	Gasterosteus_aculeatus
ENSNBRG00000002005	polr2a	81	91.630	ENSGGOG00000014800	-	96	92.792	Gorilla_gorilla
ENSNBRG00000002005	polr2a	99	99.732	ENSHBUG00000018937	polr2a	98	99.732	Haplochromis_burtoni
ENSNBRG00000002005	polr2a	81	94.533	ENSHGLG00000012381	POLR2A	82	94.540	Heterocephalus_glaber_female
ENSNBRG00000002005	polr2a	81	94.533	ENSHGLG00100014843	POLR2A	82	94.540	Heterocephalus_glaber_male
ENSNBRG00000002005	polr2a	100	96.134	ENSHCOG00000011874	polr2a	100	95.677	Hippocampus_comes
ENSNBRG00000002005	polr2a	100	97.459	ENSIPUG00000002613	Polr2a	100	97.459	Ictalurus_punctatus
ENSNBRG00000002005	polr2a	81	94.469	ENSSTOG00000001304	-	82	94.476	Ictidomys_tridecemlineatus
ENSNBRG00000002005	polr2a	81	94.469	ENSJJAG00000013049	Polr2a	82	94.476	Jaculus_jaculus
ENSNBRG00000002005	polr2a	81	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSNBRG00000002005	polr2a	99	98.443	ENSLBEG00000027652	polr2a	100	98.443	Labrus_bergylta
ENSNBRG00000002005	polr2a	80	83.238	ENSLACG00000012071	POLR2A	91	93.367	Latimeria_chalumnae
ENSNBRG00000002005	polr2a	89	94.518	ENSLOCG00000013863	polr2a	85	90.533	Lepisosteus_oculatus
ENSNBRG00000002005	polr2a	93	89.250	ENSLAFG00000008626	-	86	91.631	Loxodonta_africana
ENSNBRG00000002005	polr2a	51	92.952	ENSMFAG00000007042	-	99	92.952	Macaca_fascicularis
ENSNBRG00000002005	polr2a	81	94.406	ENSMMUG00000023620	-	91	91.569	Macaca_mulatta
ENSNBRG00000002005	polr2a	81	93.961	ENSMNEG00000040407	-	81	93.968	Macaca_nemestrina
ENSNBRG00000002005	polr2a	80	89.883	ENSMLEG00000030263	-	99	92.952	Mandrillus_leucophaeus
ENSNBRG00000002005	polr2a	100	96.541	ENSMAMG00000003351	polr2a	100	96.083	Mastacembelus_armatus
ENSNBRG00000002005	polr2a	100	98.859	ENSMZEG00005021429	polr2a	100	98.859	Maylandia_zebra
ENSNBRG00000002005	polr2a	51	94.190	ENSMAUG00000021055	-	99	94.190	Mesocricetus_auratus
ENSNBRG00000002005	polr2a	81	93.520	ENSMICG00000013372	-	98	93.449	Microcebus_murinus
ENSNBRG00000002005	polr2a	99	92.005	ENSMOCG00000018279	Polr2a	100	92.015	Microtus_ochrogaster
ENSNBRG00000002005	polr2a	84	95.533	ENSMMOG00000012515	polr2a	92	94.975	Mola_mola
ENSNBRG00000002005	polr2a	81	91.806	ENSMODG00000007009	-	82	91.816	Monodelphis_domestica
ENSNBRG00000002005	polr2a	91	95.973	ENSMALG00000008716	polr2a	99	98.348	Monopterus_albus
ENSNBRG00000002005	polr2a	81	94.469	MGP_CAROLIEiJ_G0016587	Polr2a	82	94.476	Mus_caroli
ENSNBRG00000002005	polr2a	81	94.469	ENSMUSG00000005198	Polr2a	82	94.476	Mus_musculus
ENSNBRG00000002005	polr2a	81	90.111	MGP_PahariEiJ_G0017718	Polr2a	82	90.123	Mus_pahari
ENSNBRG00000002005	polr2a	81	94.469	MGP_SPRETEiJ_G0017423	Polr2a	82	94.476	Mus_spretus
ENSNBRG00000002005	polr2a	81	92.179	ENSMPUG00000009648	-	82	92.188	Mustela_putorius_furo
ENSNBRG00000002005	polr2a	81	91.692	ENSMLUG00000009088	-	82	91.703	Myotis_lucifugus
ENSNBRG00000002005	polr2a	81	94.469	ENSNGAG00000002543	Polr2a	82	94.476	Nannospalax_galili
ENSNBRG00000002005	polr2a	81	94.469	ENSNLEG00000009460	-	82	94.476	Nomascus_leucogenys
ENSNBRG00000002005	polr2a	93	95.098	ENSMEUG00000008611	-	96	85.277	Notamacropus_eugenii
ENSNBRG00000002005	polr2a	80	91.851	ENSOPRG00000015116	-	99	91.282	Ochotona_princeps
ENSNBRG00000002005	polr2a	81	90.973	ENSODEG00000017674	-	83	91.409	Octodon_degus
ENSNBRG00000002005	polr2a	100	97.711	ENSONIG00000009231	polr2a	100	97.152	Oreochromis_niloticus
ENSNBRG00000002005	polr2a	99	88.276	ENSOCUG00000017929	-	100	91.507	Oryctolagus_cuniculus
ENSNBRG00000002005	polr2a	100	98.392	ENSORLG00000006431	polr2a	100	98.392	Oryzias_latipes
ENSNBRG00000002005	polr2a	100	98.392	ENSORLG00020010235	polr2a	100	98.392	Oryzias_latipes_hni
ENSNBRG00000002005	polr2a	100	98.288	ENSORLG00015007075	polr2a	100	98.288	Oryzias_latipes_hsok
ENSNBRG00000002005	polr2a	98	95.582	ENSOMEG00000010713	polr2a	99	97.930	Oryzias_melastigma
ENSNBRG00000002005	polr2a	81	92.179	ENSOGAG00000033608	-	82	92.188	Otolemur_garnettii
ENSNBRG00000002005	polr2a	84	92.179	ENSOARG00000013874	-	90	91.631	Ovis_aries
ENSNBRG00000002005	polr2a	81	94.370	ENSPPAG00000043734	-	89	90.092	Pan_paniscus
ENSNBRG00000002005	polr2a	81	94.469	ENSPTRG00000008691	POLR2A	82	94.476	Pan_troglodytes
ENSNBRG00000002005	polr2a	81	93.706	ENSPANG00000024099	-	82	93.714	Papio_anubis
ENSNBRG00000002005	polr2a	77	95.656	ENSPKIG00000005727	polr2a	85	95.656	Paramormyrops_kingsleyae
ENSNBRG00000002005	polr2a	98	90.462	ENSPSIG00000014006	POLR2A	100	90.315	Pelodiscus_sinensis
ENSNBRG00000002005	polr2a	100	97.385	ENSPMGG00000019734	polr2a	100	97.385	Periophthalmus_magnuspinnatus
ENSNBRG00000002005	polr2a	81	94.469	ENSPEMG00000012521	Polr2a	82	94.476	Peromyscus_maniculatus_bairdii
ENSNBRG00000002005	polr2a	82	91.811	ENSPCIG00000028851	-	82	91.253	Phascolarctos_cinereus
ENSNBRG00000002005	polr2a	99	96.306	ENSPFOG00000007890	polr2a	85	95.099	Poecilia_formosa
ENSNBRG00000002005	polr2a	99	96.555	ENSPLAG00000007399	polr2a	99	96.555	Poecilia_latipinna
ENSNBRG00000002005	polr2a	100	98.331	ENSPMEG00000002071	polr2a	99	98.331	Poecilia_mexicana
ENSNBRG00000002005	polr2a	100	98.340	ENSPREG00000013122	polr2a	100	98.340	Poecilia_reticulata
ENSNBRG00000002005	polr2a	81	92.179	ENSPPYG00000007924	-	82	91.631	Pongo_abelii
ENSNBRG00000002005	polr2a	73	95.132	ENSPCAG00000006951	-	74	95.132	Procavia_capensis
ENSNBRG00000002005	polr2a	81	94.469	ENSPCOG00000025260	-	82	94.476	Propithecus_coquereli
ENSNBRG00000002005	polr2a	81	91.868	ENSPVAG00000005069	-	82	91.878	Pteropus_vampyrus
ENSNBRG00000002005	polr2a	100	97.813	ENSPNYG00000022340	polr2a	100	97.253	Pundamilia_nyererei
ENSNBRG00000002005	polr2a	100	96.033	ENSPNAG00000011237	polr2a	100	95.473	Pygocentrus_nattereri
ENSNBRG00000002005	polr2a	81	92.117	ENSRNOG00000028834	Polr2a	82	92.126	Rattus_norvegicus
ENSNBRG00000002005	polr2a	81	94.406	ENSRBIG00000002471	-	91	91.563	Rhinopithecus_bieti
ENSNBRG00000002005	polr2a	81	92.117	ENSRROG00000029583	-	82	91.569	Rhinopithecus_roxellana
ENSNBRG00000002005	polr2a	82	50.815	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSNBRG00000002005	polr2a	81	94.469	ENSSBOG00000000808	-	82	94.476	Saimiri_boliviensis_boliviensis
ENSNBRG00000002005	polr2a	99	97.565	ENSSFOG00015023275	polr2a	100	97.565	Scleropages_formosus
ENSNBRG00000002005	polr2a	100	95.829	ENSSMAG00000009137	polr2a	100	95.371	Scophthalmus_maximus
ENSNBRG00000002005	polr2a	100	98.807	ENSSDUG00000020466	polr2a	100	98.807	Seriola_dumerili
ENSNBRG00000002005	polr2a	100	98.755	ENSSLDG00000020613	polr2a	100	98.755	Seriola_lalandi_dorsalis
ENSNBRG00000002005	polr2a	95	88.038	ENSSARG00000005875	-	99	88.228	Sorex_araneus
ENSNBRG00000002005	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSNBRG00000002005	polr2a	81	91.248	ENSSSCG00000028278	-	82	91.259	Sus_scrofa
ENSNBRG00000002005	polr2a	98	90.781	ENSTRUG00000012320	polr2a	81	90.006	Takifugu_rubripes
ENSNBRG00000002005	polr2a	92	94.603	ENSTNIG00000010136	polr2a	100	92.808	Tetraodon_nigroviridis
ENSNBRG00000002005	polr2a	76	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSNBRG00000002005	polr2a	81	90.503	ENSTTRG00000014273	-	82	90.515	Tursiops_truncatus
ENSNBRG00000002005	polr2a	93	94.039	ENSUAMG00000014866	-	100	91.234	Ursus_americanus
ENSNBRG00000002005	polr2a	74	92.179	ENSUMAG00000015732	-	79	92.179	Ursus_maritimus
ENSNBRG00000002005	polr2a	61	98.370	ENSVPAG00000008842	-	76	98.370	Vicugna_pacos
ENSNBRG00000002005	polr2a	81	92.117	ENSVVUG00000027878	-	83	91.569	Vulpes_vulpes
ENSNBRG00000002005	polr2a	80	91.693	ENSXETG00000012465	polr2a	82	91.703	Xenopus_tropicalis
ENSNBRG00000002005	polr2a	96	97.466	ENSXCOG00000001804	polr2a	100	97.466	Xiphophorus_couchianus
ENSNBRG00000002005	polr2a	100	98.340	ENSXMAG00000015687	polr2a	100	98.340	Xiphophorus_maculatus