EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000002236 (Gene tree)
Gene ID: 102792193
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 22086 bases
Position: chrJH422355.1:2419703-2441788
Accession: 102792193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	1	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	2	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	3	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	4	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	5	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	6	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	7	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	8	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	9	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	10	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	11	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	12	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	13	14
ENSNBRP00000002868	KH_1	PF00013.29	5.2e-186	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000002974	-	6569	XM_006801737	ENSNBRP00000002868	1268 (aa)	XP_006801800	UPI0003EBE003

Gene Model

Click here to download ENSNBRG00000002236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000002236's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000002236	hdlbpb	98	72.311	ENSNBRG00000000051	hdlbpa	99	72.311

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000002236	hdlbpb	100	97.319	ENSAPOG00000006904	hdlbpb	100	97.319	Acanthochromis_polyacanthus
ENSNBRG00000002236	hdlbpb	100	92.386	ENSACIG00000016154	hdlbpb	100	93.328	Amphilophus_citrinellus
ENSNBRG00000002236	hdlbpb	100	98.028	ENSAOCG00000004083	hdlbpb	100	98.028	Amphiprion_ocellaris
ENSNBRG00000002236	hdlbpb	100	97.950	ENSAPEG00000012270	hdlbpb	100	97.950	Amphiprion_percula
ENSNBRG00000002236	hdlbpb	100	96.451	ENSATEG00000019877	hdlbpb	100	96.451	Anabas_testudineus
ENSNBRG00000002236	hdlbpb	100	82.019	ENSACAG00000003606	-	100	82.019	Anolis_carolinensis
ENSNBRG00000002236	hdlbpb	100	99.842	ENSACLG00000006618	hdlbpb	100	99.842	Astatotilapia_calliptera
ENSNBRG00000002236	hdlbpb	100	78.285	ENSAMXG00000019946	hdlbpb	100	78.285	Astyanax_mexicanus
ENSNBRG00000002236	hdlbpb	100	95.662	ENSCSEG00000000955	hdlbpb	100	95.662	Cynoglossus_semilaevis
ENSNBRG00000002236	hdlbpb	100	95.584	ENSCVAG00000005345	hdlbpb	100	95.584	Cyprinodon_variegatus
ENSNBRG00000002236	hdlbpb	99	85.478	ENSDARG00000061864	hdlbpb	99	85.399	Danio_rerio
ENSNBRG00000002236	hdlbpb	92	70.427	ENSEBUG00000005304	hdlbpb	94	71.229	Eptatretus_burgeri
ENSNBRG00000002236	hdlbpb	100	78.476	ENSELUG00000019925	hdlbpb	100	78.476	Esox_lucius
ENSNBRG00000002236	hdlbpb	87	34.375	ENSFHEG00000001701	hdlbpb	100	90.615	Fundulus_heteroclitus
ENSNBRG00000002236	hdlbpb	95	87.520	ENSGMOG00000004522	hdlbpb	78	87.520	Gadus_morhua
ENSNBRG00000002236	hdlbpb	100	95.741	ENSGAFG00000005278	hdlbpb	100	95.741	Gambusia_affinis
ENSNBRG00000002236	hdlbpb	99	92.186	ENSGACG00000019361	hdlbpb	100	92.186	Gasterosteus_aculeatus
ENSNBRG00000002236	hdlbpb	100	99.685	ENSHBUG00000018434	hdlbpb	100	99.685	Haplochromis_burtoni
ENSNBRG00000002236	hdlbpb	100	85.512	ENSIPUG00000003291	HDLBP	100	85.876	Ictalurus_punctatus
ENSNBRG00000002236	hdlbpb	100	96.451	ENSKMAG00000016562	hdlbpb	100	96.451	Kryptolebias_marmoratus
ENSNBRG00000002236	hdlbpb	100	96.530	ENSLBEG00000027855	hdlbpb	100	96.530	Labrus_bergylta
ENSNBRG00000002236	hdlbpb	100	84.960	ENSLACG00000007661	hdlbpb	90	84.960	Latimeria_chalumnae
ENSNBRG00000002236	hdlbpb	100	83.058	ENSLOCG00000013909	hdlbpb	100	83.058	Lepisosteus_oculatus
ENSNBRG00000002236	hdlbpb	100	97.240	ENSMAMG00000003035	hdlbpb	100	97.240	Mastacembelus_armatus
ENSNBRG00000002236	hdlbpb	100	99.842	ENSMZEG00005021465	hdlbpb	100	99.842	Maylandia_zebra
ENSNBRG00000002236	hdlbpb	100	94.953	ENSMMOG00000012525	hdlbpb	100	94.953	Mola_mola
ENSNBRG00000002236	hdlbpb	100	94.795	ENSMALG00000008938	hdlbpb	100	94.795	Monopterus_albus
ENSNBRG00000002236	hdlbpb	100	99.527	ENSONIG00000009211	hdlbpb	100	99.527	Oreochromis_niloticus
ENSNBRG00000002236	hdlbpb	100	95.189	ENSORLG00000006581	hdlbpb	100	95.189	Oryzias_latipes
ENSNBRG00000002236	hdlbpb	100	95.189	ENSORLG00020010012	hdlbpb	100	95.189	Oryzias_latipes_hni
ENSNBRG00000002236	hdlbpb	100	95.426	ENSORLG00015006863	hdlbpb	100	95.426	Oryzias_latipes_hsok
ENSNBRG00000002236	hdlbpb	100	95.426	ENSOMEG00000011131	hdlbpb	100	95.426	Oryzias_melastigma
ENSNBRG00000002236	hdlbpb	100	88.880	ENSPKIG00000005966	hdlbpb	100	88.880	Paramormyrops_kingsleyae
ENSNBRG00000002236	hdlbpb	86	93.056	ENSPMGG00000019853	hdlbpb	99	93.056	Periophthalmus_magnuspinnatus
ENSNBRG00000002236	hdlbpb	92	64.901	ENSPMAG00000000249	-	99	64.744	Petromyzon_marinus
ENSNBRG00000002236	hdlbpb	94	75.000	ENSPMAG00000002131	hdlbpb	100	75.000	Petromyzon_marinus
ENSNBRG00000002236	hdlbpb	100	95.008	ENSPFOG00000008755	hdlbpb	100	95.008	Poecilia_formosa
ENSNBRG00000002236	hdlbpb	100	96.057	ENSPLAG00000007055	hdlbpb	100	96.057	Poecilia_latipinna
ENSNBRG00000002236	hdlbpb	100	95.978	ENSPMEG00000001952	hdlbpb	100	95.978	Poecilia_mexicana
ENSNBRG00000002236	hdlbpb	100	96.136	ENSPREG00000012848	hdlbpb	100	96.136	Poecilia_reticulata
ENSNBRG00000002236	hdlbpb	100	99.527	ENSPNYG00000022467	hdlbpb	100	99.527	Pundamilia_nyererei
ENSNBRG00000002236	hdlbpb	100	87.697	ENSPNAG00000011104	hdlbpb	100	87.697	Pygocentrus_nattereri
ENSNBRG00000002236	hdlbpb	100	88.091	ENSSFOG00015023199	hdlbpb	100	88.091	Scleropages_formosus
ENSNBRG00000002236	hdlbpb	100	96.845	ENSSMAG00000008790	hdlbpb	100	96.845	Scophthalmus_maximus
ENSNBRG00000002236	hdlbpb	100	97.713	ENSSDUG00000020694	hdlbpb	100	97.713	Seriola_dumerili
ENSNBRG00000002236	hdlbpb	100	97.240	ENSSLDG00000020807	hdlbpb	100	97.240	Seriola_lalandi_dorsalis
ENSNBRG00000002236	hdlbpb	100	82.729	ENSSPUG00000018688	-	100	82.729	Sphenodon_punctatus
ENSNBRG00000002236	hdlbpb	100	97.871	ENSSPAG00000016969	hdlbpb	100	97.871	Stegastes_partitus
ENSNBRG00000002236	hdlbpb	98	92.874	ENSTRUG00000012888	hdlbpb	99	92.795	Takifugu_rubripes
ENSNBRG00000002236	hdlbpb	99	93.970	ENSTNIG00000002555	hdlbpb	100	93.970	Tetraodon_nigroviridis
ENSNBRG00000002236	hdlbpb	100	83.990	ENSXCOG00000001797	hdlbpb	100	83.990	Xiphophorus_couchianus
ENSNBRG00000002236	hdlbpb	100	95.505	ENSXMAG00000015633	hdlbpb	100	95.505	Xiphophorus_maculatus