EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000002910 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: probable ATP-dependent DNA helicase HFM1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 15397 bases
Position: chrJH422283.1:8061082-8076478
Accession: 102783193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000003815	ResIII	PF04851.15	5.5e-12	1	1
ENSNBRP00000003855	ResIII	PF04851.15	2.9e-10	1	1
ENSNBRP00000003815	DEAD	PF00270.29	9.1e-28	1	1
ENSNBRP00000003855	DEAD	PF00270.29	2.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000003945	-	3081	-	ENSNBRP00000003815	1026 (aa)	-	-
ENSNBRT00000003985	-	2439	XM_006786796	ENSNBRP00000003855	813 (aa)	XP_006786859	-

Gene Model

Click here to download ENSNBRG00000002910's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000002910's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000002910	hfm1	78	32.984	ENSNBRG00000022083	ascc3	63	32.984
ENSNBRG00000002910	hfm1	88	30.952	ENSNBRG00000017960	snrnp200	76	32.053

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000002910	hfm1	97	65.697	ENSG00000162669	HFM1	65	60.557	Homo_sapiens
ENSNBRG00000002910	hfm1	100	81.395	ENSAPOG00000005304	hfm1	99	81.395	Acanthochromis_polyacanthus
ENSNBRG00000002910	hfm1	98	64.982	ENSAMEG00000000432	HFM1	69	57.115	Ailuropoda_melanoleuca
ENSNBRG00000002910	hfm1	97	86.303	ENSACIG00000021553	hfm1	95	80.729	Amphilophus_citrinellus
ENSNBRG00000002910	hfm1	100	83.431	ENSAOCG00000022839	hfm1	99	83.431	Amphiprion_ocellaris
ENSNBRG00000002910	hfm1	100	82.984	ENSAPEG00000014316	hfm1	99	82.984	Amphiprion_percula
ENSNBRG00000002910	hfm1	97	84.102	ENSATEG00000019181	hfm1	92	70.465	Anabas_testudineus
ENSNBRG00000002910	hfm1	97	65.175	ENSAPLG00000013639	HFM1	65	61.249	Anas_platyrhynchos
ENSNBRG00000002910	hfm1	97	64.649	ENSANAG00000029513	HFM1	69	57.457	Aotus_nancymaae
ENSNBRG00000002910	hfm1	100	96.252	ENSACLG00000009033	hfm1	100	96.252	Astatotilapia_calliptera
ENSNBRG00000002910	hfm1	97	73.422	ENSAMXG00000006108	hfm1	66	67.442	Astyanax_mexicanus
ENSNBRG00000002910	hfm1	97	65.455	ENSBTAG00000020856	HFM1	70	57.632	Bos_taurus
ENSNBRG00000002910	hfm1	97	65.333	ENSCJAG00000001843	HFM1	65	60.730	Callithrix_jacchus
ENSNBRG00000002910	hfm1	97	65.291	ENSCAFG00000020187	HFM1	71	55.778	Canis_familiaris
ENSNBRG00000002910	hfm1	97	65.981	ENSTSYG00000014250	HFM1	65	61.028	Carlito_syrichta
ENSNBRG00000002910	hfm1	97	65.212	ENSCPOG00000007421	HFM1	70	58.477	Cavia_porcellus
ENSNBRG00000002910	hfm1	97	64.970	ENSCCAG00000033206	HFM1	65	60.450	Cebus_capucinus
ENSNBRG00000002910	hfm1	97	65.455	ENSCATG00000030987	HFM1	65	60.343	Cercocebus_atys
ENSNBRG00000002910	hfm1	97	65.266	ENSCLAG00000005173	HFM1	70	55.386	Chinchilla_lanigera
ENSNBRG00000002910	hfm1	81	51.676	ENSCSAVG00000005094	-	100	51.676	Ciona_savignyi
ENSNBRG00000002910	hfm1	94	61.423	ENSCGRG00001016995	Hfm1	70	53.407	Cricetulus_griseus_chok1gshd
ENSNBRG00000002910	hfm1	97	63.350	ENSCGRG00000017181	Hfm1	70	55.392	Cricetulus_griseus_crigri
ENSNBRG00000002910	hfm1	97	79.146	ENSCSEG00000017659	hfm1	95	69.442	Cynoglossus_semilaevis
ENSNBRG00000002910	hfm1	84	79.044	ENSCVAG00000005075	hfm1	86	79.044	Cyprinodon_variegatus
ENSNBRG00000002910	hfm1	97	71.535	ENSDARG00000104288	hfm1	74	71.535	Danio_rerio
ENSNBRG00000002910	hfm1	97	64.677	ENSDNOG00000004776	HFM1	70	55.100	Dasypus_novemcinctus
ENSNBRG00000002910	hfm1	97	62.945	ENSDORG00000014661	Hfm1	65	58.421	Dipodomys_ordii
ENSNBRG00000002910	hfm1	52	61.400	ENSEBUG00000006133	-	92	61.400	Eptatretus_burgeri
ENSNBRG00000002910	hfm1	94	64.713	ENSEASG00005015424	HFM1	87	60.874	Equus_asinus_asinus
ENSNBRG00000002910	hfm1	97	65.212	ENSECAG00000024039	HFM1	66	58.631	Equus_caballus
ENSNBRG00000002910	hfm1	99	75.584	ENSELUG00000018944	hfm1	98	75.584	Esox_lucius
ENSNBRG00000002910	hfm1	97	65.212	ENSFCAG00000029116	HFM1	69	57.045	Felis_catus
ENSNBRG00000002910	hfm1	97	66.303	ENSFALG00000001781	HFM1	65	61.638	Ficedula_albicollis
ENSNBRG00000002910	hfm1	97	65.333	ENSFDAG00000020816	HFM1	66	58.529	Fukomys_damarensis
ENSNBRG00000002910	hfm1	97	71.985	ENSGMOG00000017436	hfm1	97	68.777	Gadus_morhua
ENSNBRG00000002910	hfm1	99	77.262	ENSGAFG00000018093	hfm1	100	77.146	Gambusia_affinis
ENSNBRG00000002910	hfm1	97	78.345	ENSGACG00000015686	hfm1	97	75.301	Gasterosteus_aculeatus
ENSNBRG00000002910	hfm1	97	65.697	ENSGGOG00000038524	HFM1	65	60.300	Gorilla_gorilla
ENSNBRG00000002910	hfm1	100	91.572	ENSHBUG00000007309	hfm1	100	91.572	Haplochromis_burtoni
ENSNBRG00000002910	hfm1	99	80.741	ENSHCOG00000019632	hfm1	100	80.741	Hippocampus_comes
ENSNBRG00000002910	hfm1	98	74.032	ENSIPUG00000017020	hfm1	91	74.032	Ictalurus_punctatus
ENSNBRG00000002910	hfm1	97	64.121	ENSJJAG00000017198	Hfm1	72	56.107	Jaculus_jaculus
ENSNBRG00000002910	hfm1	96	81.640	ENSKMAG00000002282	hfm1	91	74.972	Kryptolebias_marmoratus
ENSNBRG00000002910	hfm1	100	82.892	ENSLBEG00000006759	hfm1	99	82.892	Labrus_bergylta
ENSNBRG00000002910	hfm1	97	67.389	ENSLACG00000010698	HFM1	89	61.996	Latimeria_chalumnae
ENSNBRG00000002910	hfm1	97	71.308	ENSLOCG00000004931	hfm1	86	65.565	Lepisosteus_oculatus
ENSNBRG00000002910	hfm1	78	66.517	ENSLAFG00000015903	-	89	68.326	Loxodonta_africana
ENSNBRG00000002910	hfm1	97	62.652	ENSMFAG00000003649	HFM1	65	57.934	Macaca_fascicularis
ENSNBRG00000002910	hfm1	97	64.970	ENSMMUG00000006819	HFM1	65	59.914	Macaca_mulatta
ENSNBRG00000002910	hfm1	100	86.152	ENSMAMG00000004623	hfm1	99	86.152	Mastacembelus_armatus
ENSNBRG00000002910	hfm1	100	96.372	ENSMZEG00005004679	hfm1	100	96.372	Maylandia_zebra
ENSNBRG00000002910	hfm1	89	64.136	ENSMGAG00000008437	HFM1	95	64.136	Meleagris_gallopavo
ENSNBRG00000002910	hfm1	97	63.714	ENSMAUG00000018858	Hfm1	65	59.184	Mesocricetus_auratus
ENSNBRG00000002910	hfm1	97	64.649	ENSMICG00000037935	HFM1	65	60.236	Microcebus_murinus
ENSNBRG00000002910	hfm1	97	63.956	ENSMOCG00000014812	Hfm1	70	55.980	Microtus_ochrogaster
ENSNBRG00000002910	hfm1	100	80.626	ENSMMOG00000006148	hfm1	99	80.626	Mola_mola
ENSNBRG00000002910	hfm1	100	82.256	ENSMALG00000002401	hfm1	99	82.256	Monopterus_albus
ENSNBRG00000002910	hfm1	88	73.504	MGP_CAROLIEiJ_G0027496	Hfm1	69	73.504	Mus_caroli
ENSNBRG00000002910	hfm1	97	63.471	ENSMUSG00000043410	Hfm1	68	56.997	Mus_musculus
ENSNBRG00000002910	hfm1	97	63.714	MGP_PahariEiJ_G0017268	Hfm1	72	54.685	Mus_pahari
ENSNBRG00000002910	hfm1	97	63.956	MGP_SPRETEiJ_G0028495	Hfm1	70	56.024	Mus_spretus
ENSNBRG00000002910	hfm1	97	65.091	ENSMPUG00000004594	HFM1	66	58.529	Mustela_putorius_furo
ENSNBRG00000002910	hfm1	97	64.970	ENSMLUG00000010200	HFM1	64	60.236	Myotis_lucifugus
ENSNBRG00000002910	hfm1	97	64.320	ENSNLEG00000010285	HFM1	62	59.910	Nomascus_leucogenys
ENSNBRG00000002910	hfm1	88	65.584	ENSMEUG00000015788	HFM1	62	58.883	Notamacropus_eugenii
ENSNBRG00000002910	hfm1	97	60.485	ENSOPRG00000013916	HFM1	58	60.485	Ochotona_princeps
ENSNBRG00000002910	hfm1	97	92.727	ENSONIG00000010590	hfm1	97	81.460	Oreochromis_niloticus
ENSNBRG00000002910	hfm1	96	82.675	ENSORLG00000026844	hfm1	99	82.675	Oryzias_latipes
ENSNBRG00000002910	hfm1	97	70.717	ENSORLG00020002951	hfm1	74	65.628	Oryzias_latipes_hni
ENSNBRG00000002910	hfm1	97	79.369	ENSOMEG00000016474	hfm1	73	67.625	Oryzias_melastigma
ENSNBRG00000002910	hfm1	97	65.133	ENSOGAG00000032369	HFM1	76	60.493	Otolemur_garnettii
ENSNBRG00000002910	hfm1	97	65.333	ENSOARG00000015812	HFM1	70	57.436	Ovis_aries
ENSNBRG00000002910	hfm1	97	65.939	ENSPPAG00000024582	HFM1	70	60.772	Pan_paniscus
ENSNBRG00000002910	hfm1	97	65.212	ENSPPRG00000003270	HFM1	69	56.989	Panthera_pardus
ENSNBRG00000002910	hfm1	97	65.212	ENSPTIG00000018881	HFM1	69	57.087	Panthera_tigris_altaica
ENSNBRG00000002910	hfm1	97	65.818	ENSPTRG00000000948	HFM1	65	60.665	Pan_troglodytes
ENSNBRG00000002910	hfm1	97	65.091	ENSPANG00000009838	HFM1	65	60.021	Papio_anubis
ENSNBRG00000002910	hfm1	99	70.778	ENSPKIG00000003810	hfm1	99	70.778	Paramormyrops_kingsleyae
ENSNBRG00000002910	hfm1	97	78.894	ENSPMGG00000011059	hfm1	99	78.894	Periophthalmus_magnuspinnatus
ENSNBRG00000002910	hfm1	97	64.078	ENSPEMG00000022852	Hfm1	70	56.219	Peromyscus_maniculatus_bairdii
ENSNBRG00000002910	hfm1	97	65.659	ENSPCIG00000014233	HFM1	63	60.493	Phascolarctos_cinereus
ENSNBRG00000002910	hfm1	97	80.218	ENSPFOG00000017194	hfm1	99	70.057	Poecilia_formosa
ENSNBRG00000002910	hfm1	97	80.097	ENSPLAG00000000571	hfm1	93	71.143	Poecilia_latipinna
ENSNBRG00000002910	hfm1	97	80.218	ENSPMEG00000019475	hfm1	94	71.347	Poecilia_mexicana
ENSNBRG00000002910	hfm1	97	79.733	ENSPREG00000007803	hfm1	100	77.093	Poecilia_reticulata
ENSNBRG00000002910	hfm1	97	65.818	ENSPPYG00000001163	HFM1	70	56.905	Pongo_abelii
ENSNBRG00000002910	hfm1	97	60.437	ENSPVAG00000009713	HFM1	69	55.102	Pteropus_vampyrus
ENSNBRG00000002910	hfm1	100	96.014	ENSPNYG00000001795	hfm1	100	96.014	Pundamilia_nyererei
ENSNBRG00000002910	hfm1	97	75.188	ENSPNAG00000010865	hfm1	82	75.188	Pygocentrus_nattereri
ENSNBRG00000002910	hfm1	97	63.835	ENSRNOG00000023299	Hfm1	70	55.686	Rattus_norvegicus
ENSNBRG00000002910	hfm1	99	64.421	ENSRROG00000045569	HFM1	65	60.300	Rhinopithecus_roxellana
ENSNBRG00000002910	hfm1	97	65.333	ENSSBOG00000027456	HFM1	69	58.836	Saimiri_boliviensis_boliviensis
ENSNBRG00000002910	hfm1	69	65.541	ENSSHAG00000014616	-	67	67.736	Sarcophilus_harrisii
ENSNBRG00000002910	hfm1	97	72.694	ENSSFOG00015020129	hfm1	63	65.861	Scleropages_formosus
ENSNBRG00000002910	hfm1	97	82.729	ENSSMAG00000006907	hfm1	88	78.174	Scophthalmus_maximus
ENSNBRG00000002910	hfm1	100	81.935	ENSSDUG00000011424	hfm1	99	81.935	Seriola_dumerili
ENSNBRG00000002910	hfm1	100	81.128	ENSSLDG00000016386	hfm1	99	81.128	Seriola_lalandi_dorsalis
ENSNBRG00000002910	hfm1	100	82.284	ENSSPAG00000001023	hfm1	99	82.284	Stegastes_partitus
ENSNBRG00000002910	hfm1	97	65.333	ENSSSCG00000006912	HFM1	76	55.863	Sus_scrofa
ENSNBRG00000002910	hfm1	97	66.061	ENSTGUG00000006172	HFM1	97	61.135	Taeniopygia_guttata
ENSNBRG00000002910	hfm1	56	80.215	ENSTNIG00000006962	hfm1	97	80.467	Tetraodon_nigroviridis
ENSNBRG00000002910	hfm1	97	64.727	ENSTTRG00000013933	HFM1	71	56.932	Tursiops_truncatus
ENSNBRG00000002910	hfm1	97	62.788	ENSVPAG00000011331	HFM1	70	55.382	Vicugna_pacos
ENSNBRG00000002910	hfm1	95	64.356	ENSVVUG00000020760	HFM1	88	60.606	Vulpes_vulpes
ENSNBRG00000002910	hfm1	97	82.702	ENSXMAG00000004178	hfm1	91	82.702	Xiphophorus_maculatus