EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000003062 (Gene tree)
Gene ID: 102794842
Gene Symbol: rtca
Alias: cb158|rtcd1|sb:cb158|wu:fc62c03
Full Name: RNA 3'-terminal phosphate cyclase-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 5442 bases
Position: chrJH422378.1:280125-285566
Accession: 102794842
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000003870	RTC	PF01137.21	2.8e-87	1	1
ENSNBRP00000003870	RTC_insert	PF05189.13	6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000004000	-	1926	XM_006803593	ENSNBRP00000003870	366 (aa)	XP_006803656	UPI0003EC1CC5

Gene Model

Click here to download ENSNBRG00000003062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000003062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000003062	rtca	99	70.492	ENSG00000137996	RTCA	100	70.492	Homo_sapiens
ENSNBRG00000003062	rtca	100	92.350	ENSAPOG00000001345	rtca	100	92.350	Acanthochromis_polyacanthus
ENSNBRG00000003062	rtca	73	72.119	ENSAMEG00000008855	RTCA	100	72.119	Ailuropoda_melanoleuca
ENSNBRG00000003062	rtca	99	95.330	ENSACIG00000019643	rtca	100	95.330	Amphilophus_citrinellus
ENSNBRG00000003062	rtca	100	92.896	ENSAOCG00000014979	rtca	100	92.896	Amphiprion_ocellaris
ENSNBRG00000003062	rtca	100	92.623	ENSAPEG00000006945	rtca	100	92.623	Amphiprion_percula
ENSNBRG00000003062	rtca	95	91.691	ENSATEG00000006315	rtca	96	91.691	Anabas_testudineus
ENSNBRG00000003062	rtca	95	66.856	ENSAPLG00000015430	RTCA	100	66.856	Anas_platyrhynchos
ENSNBRG00000003062	rtca	98	70.914	ENSANAG00000025446	RTCA	99	70.914	Aotus_nancymaae
ENSNBRG00000003062	rtca	100	99.180	ENSACLG00000020770	rtca	100	99.180	Astatotilapia_calliptera
ENSNBRG00000003062	rtca	99	81.044	ENSAMXG00000043271	rtca	100	81.044	Astyanax_mexicanus
ENSNBRG00000003062	rtca	99	71.038	ENSBTAG00000006321	RTCA	100	71.038	Bos_taurus
ENSNBRG00000003062	rtca	99	70.219	ENSCJAG00000003398	RTCA	100	70.219	Callithrix_jacchus
ENSNBRG00000003062	rtca	99	70.219	ENSCAFG00000020010	RTCA	68	70.219	Canis_familiaris
ENSNBRG00000003062	rtca	99	70.219	ENSCAFG00020011528	RTCA	57	70.219	Canis_lupus_dingo
ENSNBRG00000003062	rtca	99	70.765	ENSCHIG00000018937	RTCA	100	70.765	Capra_hircus
ENSNBRG00000003062	rtca	99	70.027	ENSTSYG00000011305	RTCA	100	70.027	Carlito_syrichta
ENSNBRG00000003062	rtca	99	69.672	ENSCCAG00000021844	RTCA	100	69.672	Cebus_capucinus
ENSNBRG00000003062	rtca	99	68.074	ENSCATG00000019364	RTCA	100	70.550	Cercocebus_atys
ENSNBRG00000003062	rtca	86	71.835	ENSCLAG00000006125	RTCA	100	71.835	Chinchilla_lanigera
ENSNBRG00000003062	rtca	99	70.219	ENSCSAG00000001509	RTCA	100	70.219	Chlorocebus_sabaeus
ENSNBRG00000003062	rtca	98	69.806	ENSCHOG00000005211	RTCA	99	69.806	Choloepus_hoffmanni
ENSNBRG00000003062	rtca	99	66.849	ENSCPBG00000026658	RTCA	100	66.849	Chrysemys_picta_bellii
ENSNBRG00000003062	rtca	99	55.220	ENSCING00000007875	-	99	55.220	Ciona_intestinalis
ENSNBRG00000003062	rtca	99	54.396	ENSCSAVG00000007269	-	99	54.396	Ciona_savignyi
ENSNBRG00000003062	rtca	99	69.945	ENSCANG00000040106	RTCA	100	69.945	Colobus_angolensis_palliatus
ENSNBRG00000003062	rtca	73	70.632	ENSCGRG00001013163	Rtca	85	70.632	Cricetulus_griseus_chok1gshd
ENSNBRG00000003062	rtca	98	84.358	ENSCSEG00000000530	rtca	96	84.358	Cynoglossus_semilaevis
ENSNBRG00000003062	rtca	99	72.131	ENSCVAG00000021809	rtca	100	72.131	Cyprinodon_variegatus
ENSNBRG00000003062	rtca	99	79.945	ENSDARG00000002215	rtca	100	79.945	Danio_rerio
ENSNBRG00000003062	rtca	99	70.765	ENSDNOG00000000456	RTCA	100	70.765	Dasypus_novemcinctus
ENSNBRG00000003062	rtca	99	70.492	ENSDORG00000005448	Rtca	100	70.492	Dipodomys_ordii
ENSNBRG00000003062	rtca	99	39.945	FBgn0025630	Rtca	99	39.945	Drosophila_melanogaster
ENSNBRG00000003062	rtca	93	52.616	ENSEBUG00000008556	rtca	95	52.616	Eptatretus_burgeri
ENSNBRG00000003062	rtca	99	70.492	ENSEASG00005015926	RTCA	100	70.492	Equus_asinus_asinus
ENSNBRG00000003062	rtca	99	70.492	ENSECAG00000019831	RTCA	100	70.492	Equus_caballus
ENSNBRG00000003062	rtca	91	63.584	ENSEEUG00000001165	RTCA	100	63.584	Erinaceus_europaeus
ENSNBRG00000003062	rtca	98	78.552	ENSELUG00000003741	rtca	99	78.552	Esox_lucius
ENSNBRG00000003062	rtca	99	70.572	ENSFCAG00000024460	RTCA	100	70.572	Felis_catus
ENSNBRG00000003062	rtca	92	67.456	ENSFALG00000002443	RTCA	91	67.456	Ficedula_albicollis
ENSNBRG00000003062	rtca	98	55.801	ENSFDAG00000016084	-	100	55.801	Fukomys_damarensis
ENSNBRG00000003062	rtca	99	69.399	ENSFDAG00000012070	-	100	69.399	Fukomys_damarensis
ENSNBRG00000003062	rtca	55	88.000	ENSFHEG00000002868	rtca	92	82.791	Fundulus_heteroclitus
ENSNBRG00000003062	rtca	99	79.121	ENSGMOG00000013264	rtca	100	79.121	Gadus_morhua
ENSNBRG00000003062	rtca	99	67.397	ENSGALG00000005277	RTCA	100	67.397	Gallus_gallus
ENSNBRG00000003062	rtca	100	90.710	ENSGAFG00000011853	rtca	100	90.710	Gambusia_affinis
ENSNBRG00000003062	rtca	99	86.813	ENSGACG00000013497	rtca	100	86.813	Gasterosteus_aculeatus
ENSNBRG00000003062	rtca	80	66.212	ENSGAGG00000023306	RTCA	100	66.212	Gopherus_agassizii
ENSNBRG00000003062	rtca	99	69.945	ENSGGOG00000009546	-	100	69.945	Gorilla_gorilla
ENSNBRG00000003062	rtca	99	69.399	ENSGGOG00000044018	-	100	69.399	Gorilla_gorilla
ENSNBRG00000003062	rtca	100	98.907	ENSHBUG00000002114	rtca	100	98.907	Haplochromis_burtoni
ENSNBRG00000003062	rtca	99	69.672	ENSHGLG00000002617	RTCA	100	69.672	Heterocephalus_glaber_female
ENSNBRG00000003062	rtca	99	69.672	ENSHGLG00100006056	RTCA	100	69.672	Heterocephalus_glaber_male
ENSNBRG00000003062	rtca	99	78.356	ENSHCOG00000020628	rtca	90	78.356	Hippocampus_comes
ENSNBRG00000003062	rtca	99	79.670	ENSIPUG00000024803	rtca	100	79.670	Ictalurus_punctatus
ENSNBRG00000003062	rtca	99	65.574	ENSSTOG00000013528	-	100	65.574	Ictidomys_tridecemlineatus
ENSNBRG00000003062	rtca	99	62.022	ENSSTOG00000033099	-	100	62.022	Ictidomys_tridecemlineatus
ENSNBRG00000003062	rtca	99	50.959	ENSJJAG00000016178	Rtca	100	50.959	Jaculus_jaculus
ENSNBRG00000003062	rtca	100	89.891	ENSKMAG00000006651	rtca	100	89.891	Kryptolebias_marmoratus
ENSNBRG00000003062	rtca	98	88.333	ENSLBEG00000028971	rtca	99	88.333	Labrus_bergylta
ENSNBRG00000003062	rtca	87	87.461	ENSLBEG00000002448	-	99	87.461	Labrus_bergylta
ENSNBRG00000003062	rtca	99	67.671	ENSLACG00000013666	RTCA	100	67.671	Latimeria_chalumnae
ENSNBRG00000003062	rtca	99	74.795	ENSLOCG00000000093	rtca	99	74.795	Lepisosteus_oculatus
ENSNBRG00000003062	rtca	99	69.672	ENSLAFG00000001473	RTCA	100	69.672	Loxodonta_africana
ENSNBRG00000003062	rtca	99	70.219	ENSMFAG00000034132	RTCA	100	70.219	Macaca_fascicularis
ENSNBRG00000003062	rtca	99	70.219	ENSMMUG00000019105	RTCA	100	70.219	Macaca_mulatta
ENSNBRG00000003062	rtca	84	70.227	ENSMNEG00000037163	RTCA	100	70.227	Macaca_nemestrina
ENSNBRG00000003062	rtca	99	57.923	ENSMLEG00000042151	RTCA	100	57.923	Mandrillus_leucophaeus
ENSNBRG00000003062	rtca	99	92.857	ENSMAMG00000016536	rtca	100	92.857	Mastacembelus_armatus
ENSNBRG00000003062	rtca	100	99.180	ENSMZEG00005017945	rtca	100	99.180	Maylandia_zebra
ENSNBRG00000003062	rtca	87	67.925	ENSMGAG00000006892	RTCA	99	67.925	Meleagris_gallopavo
ENSNBRG00000003062	rtca	99	70.219	ENSMAUG00000008488	Rtca	100	70.219	Mesocricetus_auratus
ENSNBRG00000003062	rtca	84	71.197	ENSMICG00000008643	RTCA	100	71.197	Microcebus_murinus
ENSNBRG00000003062	rtca	99	69.126	ENSMOCG00000016660	Rtca	100	69.126	Microtus_ochrogaster
ENSNBRG00000003062	rtca	84	89.577	ENSMMOG00000007750	rtca	100	89.577	Mola_mola
ENSNBRG00000003062	rtca	99	70.219	ENSMODG00000003557	RTCA	100	70.219	Monodelphis_domestica
ENSNBRG00000003062	rtca	99	91.758	ENSMALG00000020844	rtca	100	91.758	Monopterus_albus
ENSNBRG00000003062	rtca	99	69.126	MGP_CAROLIEiJ_G0025565	Rtca	100	69.126	Mus_caroli
ENSNBRG00000003062	rtca	99	68.852	ENSMUSG00000000339	Rtca	100	68.852	Mus_musculus
ENSNBRG00000003062	rtca	99	69.126	MGP_PahariEiJ_G0027011	Rtca	100	69.126	Mus_pahari
ENSNBRG00000003062	rtca	99	69.126	MGP_SPRETEiJ_G0026515	Rtca	100	69.126	Mus_spretus
ENSNBRG00000003062	rtca	99	70.492	ENSMPUG00000012119	RTCA	100	70.492	Mustela_putorius_furo
ENSNBRG00000003062	rtca	99	67.302	ENSMLUG00000009922	RTCA	100	67.302	Myotis_lucifugus
ENSNBRG00000003062	rtca	99	69.399	ENSNGAG00000011540	Rtca	99	69.399	Nannospalax_galili
ENSNBRG00000003062	rtca	99	70.219	ENSNLEG00000031426	RTCA	100	70.219	Nomascus_leucogenys
ENSNBRG00000003062	rtca	73	67.407	ENSOPRG00000012092	RTCA	71	67.407	Ochotona_princeps
ENSNBRG00000003062	rtca	95	70.690	ENSODEG00000006990	RTCA	96	70.940	Octodon_degus
ENSNBRG00000003062	rtca	100	98.907	ENSONIG00000007753	rtca	100	98.907	Oreochromis_niloticus
ENSNBRG00000003062	rtca	86	70.978	ENSOANG00000012055	RTCA	98	70.978	Ornithorhynchus_anatinus
ENSNBRG00000003062	rtca	99	70.219	ENSOCUG00000014247	RTCA	100	70.219	Oryctolagus_cuniculus
ENSNBRG00000003062	rtca	99	89.286	ENSORLG00000013605	rtca	100	89.286	Oryzias_latipes
ENSNBRG00000003062	rtca	99	89.560	ENSORLG00020001904	rtca	100	89.560	Oryzias_latipes_hni
ENSNBRG00000003062	rtca	99	89.286	ENSORLG00015021064	rtca	100	89.286	Oryzias_latipes_hsok
ENSNBRG00000003062	rtca	99	88.462	ENSOMEG00000000756	rtca	100	88.462	Oryzias_melastigma
ENSNBRG00000003062	rtca	99	64.754	ENSOGAG00000005627	RTCA	100	64.754	Otolemur_garnettii
ENSNBRG00000003062	rtca	86	71.069	ENSOARG00000018122	RTCA	100	71.069	Ovis_aries
ENSNBRG00000003062	rtca	99	67.546	ENSPPAG00000035119	RTCA	100	69.903	Pan_paniscus
ENSNBRG00000003062	rtca	99	70.845	ENSPPRG00000000350	RTCA	100	70.845	Panthera_pardus
ENSNBRG00000003062	rtca	99	70.219	ENSPTIG00000012816	RTCA	100	70.219	Panthera_tigris_altaica
ENSNBRG00000003062	rtca	99	67.546	ENSPTRG00000001004	RTCA	100	69.903	Pan_troglodytes
ENSNBRG00000003062	rtca	99	70.219	ENSPANG00000000346	RTCA	100	70.219	Papio_anubis
ENSNBRG00000003062	rtca	99	80.495	ENSPKIG00000001653	rtca	100	80.495	Paramormyrops_kingsleyae
ENSNBRG00000003062	rtca	99	66.575	ENSPSIG00000011408	RTCA	100	66.575	Pelodiscus_sinensis
ENSNBRG00000003062	rtca	99	69.399	ENSPEMG00000018582	Rtca	100	69.399	Peromyscus_maniculatus_bairdii
ENSNBRG00000003062	rtca	99	56.164	ENSPMAG00000009110	rtca	99	56.164	Petromyzon_marinus
ENSNBRG00000003062	rtca	99	70.219	ENSPCIG00000007684	RTCA	100	70.219	Phascolarctos_cinereus
ENSNBRG00000003062	rtca	99	92.055	ENSPFOG00000004824	rtca	100	92.055	Poecilia_formosa
ENSNBRG00000003062	rtca	100	92.077	ENSPLAG00000011753	rtca	100	92.077	Poecilia_latipinna
ENSNBRG00000003062	rtca	100	92.077	ENSPMEG00000020469	rtca	100	92.077	Poecilia_mexicana
ENSNBRG00000003062	rtca	100	91.257	ENSPREG00000001365	rtca	100	91.257	Poecilia_reticulata
ENSNBRG00000003062	rtca	99	70.492	ENSPPYG00000001115	RTCA	100	70.492	Pongo_abelii
ENSNBRG00000003062	rtca	99	67.575	ENSPCAG00000005076	RTCA	100	67.575	Procavia_capensis
ENSNBRG00000003062	rtca	99	70.765	ENSPCOG00000005603	RTCA	100	70.765	Propithecus_coquereli
ENSNBRG00000003062	rtca	99	66.316	ENSPVAG00000009478	RTCA	100	66.316	Pteropus_vampyrus
ENSNBRG00000003062	rtca	100	99.180	ENSPNYG00000004722	rtca	100	99.180	Pundamilia_nyererei
ENSNBRG00000003062	rtca	99	80.769	ENSPNAG00000022270	rtca	100	80.769	Pygocentrus_nattereri
ENSNBRG00000003062	rtca	99	68.579	ENSRNOG00000014575	Rtca	100	68.579	Rattus_norvegicus
ENSNBRG00000003062	rtca	99	67.282	ENSRBIG00000041180	RTCA	100	69.579	Rhinopithecus_bieti
ENSNBRG00000003062	rtca	99	69.672	ENSRROG00000024929	RTCA	100	69.672	Rhinopithecus_roxellana
ENSNBRG00000003062	rtca	99	69.399	ENSSBOG00000028626	RTCA	100	69.399	Saimiri_boliviensis_boliviensis
ENSNBRG00000003062	rtca	99	70.219	ENSSHAG00000001758	RTCA	100	70.219	Sarcophilus_harrisii
ENSNBRG00000003062	rtca	100	84.054	ENSSMAG00000014680	rtca	100	84.054	Scophthalmus_maximus
ENSNBRG00000003062	rtca	98	91.061	ENSSDUG00000015585	rtca	97	90.833	Seriola_dumerili
ENSNBRG00000003062	rtca	95	91.117	ENSSLDG00000018985	rtca	95	91.117	Seriola_lalandi_dorsalis
ENSNBRG00000003062	rtca	86	65.615	ENSSARG00000013993	RTCA	100	65.615	Sorex_araneus
ENSNBRG00000003062	rtca	100	92.350	ENSSPAG00000011938	rtca	100	92.350	Stegastes_partitus
ENSNBRG00000003062	rtca	99	70.765	ENSSSCG00000006865	RTCA	100	70.765	Sus_scrofa
ENSNBRG00000003062	rtca	99	68.493	ENSTGUG00000005154	RTCA	100	68.493	Taeniopygia_guttata
ENSNBRG00000003062	rtca	99	89.560	ENSTRUG00000008799	rtca	100	89.560	Takifugu_rubripes
ENSNBRG00000003062	rtca	99	85.714	ENSTNIG00000004725	rtca	100	85.714	Tetraodon_nigroviridis
ENSNBRG00000003062	rtca	59	54.545	ENSTBEG00000000943	RTCA	61	54.545	Tupaia_belangeri
ENSNBRG00000003062	rtca	99	68.338	ENSTTRG00000015327	RTCA	100	68.338	Tursiops_truncatus
ENSNBRG00000003062	rtca	93	69.679	ENSUAMG00000017265	RTCA	96	69.679	Ursus_americanus
ENSNBRG00000003062	rtca	99	69.945	ENSUMAG00000007881	RTCA	100	69.945	Ursus_maritimus
ENSNBRG00000003062	rtca	86	62.776	ENSVPAG00000001039	RTCA	84	62.776	Vicugna_pacos
ENSNBRG00000003062	rtca	99	70.219	ENSVVUG00000022041	RTCA	68	70.219	Vulpes_vulpes
ENSNBRG00000003062	rtca	99	58.038	ENSXETG00000031661	RTCA	99	58.038	Xenopus_tropicalis
ENSNBRG00000003062	rtca	99	79.670	ENSXCOG00000008002	rtca	100	79.670	Xiphophorus_couchianus
ENSNBRG00000003062	rtca	100	90.984	ENSXMAG00000005482	rtca	100	90.984	Xiphophorus_maculatus