EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000003489 (Gene tree)
Gene ID: -
Gene Symbol: ppfibp1b
Alias: si:dkey-103i16.1
Full Name: poly(U)-specific endoribonuclease-C-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 14173 bases
Position: chrJH422288.1:6725278-6739450
Accession: 102789984
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000004493	XendoU	PF09412.10	4.9e-102	1	1
ENSNBRP00000004462	XendoU	PF09412.10	4.7e-85	1	2
ENSNBRP00000004462	XendoU	PF09412.10	4.7e-85	2	2
ENSNBRP00000004452	XendoU	PF09412.10	5e-83	1	2
ENSNBRP00000004452	XendoU	PF09412.10	5e-83	2	2
ENSNBRP00000004565	XendoU	PF09412.10	4.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000004703	-	1014	-	ENSNBRP00000004565	337 (aa)	-	-
ENSNBRT00000004600	-	867	-	ENSNBRP00000004462	288 (aa)	-	-
ENSNBRT00000004590	-	813	-	ENSNBRP00000004452	270 (aa)	-	-
ENSNBRT00000004631	-	870	XM_006789531	ENSNBRP00000004493	289 (aa)	XP_006789594	-

Gene Model

Click here to download ENSNBRG00000003489's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000003489's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000003489	ppfibp1b	97	63.830	ENSNBRG00000014825	si:dkey-222f8.3	98	63.830
ENSNBRG00000003489	ppfibp1b	94	48.913	ENSNBRG00000006137	endou2	96	48.913
ENSNBRG00000003489	ppfibp1b	82	36.515	ENSNBRG00000016421	endou	83	36.515

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000003489	ppfibp1b	100	82.818	ENSMMOG00000017067	ppfibp1b	96	83.274	Mola_mola
ENSNBRG00000003489	ppfibp1b	100	84.014	ENSPFOG00000016359	ppfibp1b	93	84.014	Poecilia_formosa
ENSNBRG00000003489	ppfibp1b	100	85.911	ENSXCOG00000020485	ppfibp1b	99	85.467	Xiphophorus_couchianus