EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000003943 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specificity factor subunit 4-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 7015 bases
Position: chrJH422327.1:1736932-1743946
Accession: 102788537
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000004971	zf-CCCH	PF00642.24	6e-22	1	2
ENSNBRP00000004971	zf-CCCH	PF00642.24	6e-22	2	2
ENSNBRP00000004971	zf-CCHC	PF00098.23	3.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000005124	-	744	XM_006798079	ENSNBRP00000004971	247 (aa)	XP_006798142	-

Gene Model

Click here to download ENSNBRG00000003943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000003943's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000003943	cpsf4	98	83.740	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSNBRG00000003943	cpsf4	72	86.441	ENSAPOG00000004921	cpsf4	100	86.441	Acanthochromis_polyacanthus
ENSNBRG00000003943	cpsf4	98	83.333	ENSAMEG00000006252	CPSF4	91	83.333	Ailuropoda_melanoleuca
ENSNBRG00000003943	cpsf4	98	87.967	ENSACIG00000009248	cpsf4	90	87.967	Amphilophus_citrinellus
ENSNBRG00000003943	cpsf4	98	93.776	ENSAOCG00000019616	cpsf4	91	93.776	Amphiprion_ocellaris
ENSNBRG00000003943	cpsf4	98	93.776	ENSAPEG00000011679	cpsf4	91	93.776	Amphiprion_percula
ENSNBRG00000003943	cpsf4	98	93.416	ENSATEG00000007010	cpsf4	91	93.416	Anabas_testudineus
ENSNBRG00000003943	cpsf4	98	82.114	ENSACAG00000012941	CPSF4	81	82.114	Anolis_carolinensis
ENSNBRG00000003943	cpsf4	98	83.740	ENSANAG00000021360	CPSF4	91	83.740	Aotus_nancymaae
ENSNBRG00000003943	cpsf4	98	99.170	ENSACLG00000010374	cpsf4	91	99.170	Astatotilapia_calliptera
ENSNBRG00000003943	cpsf4	98	82.609	ENSAMXG00000031647	cpsf4	91	82.609	Astyanax_mexicanus
ENSNBRG00000003943	cpsf4	98	78.423	ENSBTAG00000002090	CPSF4	90	78.423	Bos_taurus
ENSNBRG00000003943	cpsf4	98	83.740	ENSCJAG00000015826	CPSF4	91	83.740	Callithrix_jacchus
ENSNBRG00000003943	cpsf4	98	83.333	ENSCAFG00000015036	CPSF4	91	83.333	Canis_familiaris
ENSNBRG00000003943	cpsf4	98	78.049	ENSCAFG00020014462	CPSF4	91	78.049	Canis_lupus_dingo
ENSNBRG00000003943	cpsf4	98	82.927	ENSCHIG00000014313	CPSF4	91	82.927	Capra_hircus
ENSNBRG00000003943	cpsf4	98	71.488	ENSTSYG00000014604	-	90	71.488	Carlito_syrichta
ENSNBRG00000003943	cpsf4	96	74.262	ENSTSYG00000008195	-	97	73.554	Carlito_syrichta
ENSNBRG00000003943	cpsf4	98	79.253	ENSTSYG00000005712	-	90	79.253	Carlito_syrichta
ENSNBRG00000003943	cpsf4	87	83.562	ENSCAPG00000013881	CPSF4	87	83.562	Cavia_aperea
ENSNBRG00000003943	cpsf4	98	79.253	ENSCPOG00000001783	CPSF4	90	79.253	Cavia_porcellus
ENSNBRG00000003943	cpsf4	98	83.740	ENSCCAG00000028291	CPSF4	91	83.740	Cebus_capucinus
ENSNBRG00000003943	cpsf4	98	83.740	ENSCATG00000038440	CPSF4	91	83.740	Cercocebus_atys
ENSNBRG00000003943	cpsf4	98	83.333	ENSCLAG00000007050	CPSF4	91	83.333	Chinchilla_lanigera
ENSNBRG00000003943	cpsf4	98	83.740	ENSCSAG00000017795	CPSF4	91	83.740	Chlorocebus_sabaeus
ENSNBRG00000003943	cpsf4	56	84.058	ENSCPBG00000010269	-	83	84.058	Chrysemys_picta_bellii
ENSNBRG00000003943	cpsf4	86	82.949	ENSCPBG00000020869	CPSF4	100	82.949	Chrysemys_picta_bellii
ENSNBRG00000003943	cpsf4	94	55.172	ENSCING00000021080	-	88	55.172	Ciona_intestinalis
ENSNBRG00000003943	cpsf4	94	53.307	ENSCSAVG00000011469	-	89	53.307	Ciona_savignyi
ENSNBRG00000003943	cpsf4	98	83.740	ENSCANG00000019384	CPSF4	91	83.740	Colobus_angolensis_palliatus
ENSNBRG00000003943	cpsf4	98	79.253	ENSCGRG00001024184	Cpsf4	90	79.253	Cricetulus_griseus_chok1gshd
ENSNBRG00000003943	cpsf4	98	83.333	ENSCGRG00000013892	Cpsf4	91	83.333	Cricetulus_griseus_crigri
ENSNBRG00000003943	cpsf4	98	92.116	ENSCSEG00000019055	cpsf4	91	92.116	Cynoglossus_semilaevis
ENSNBRG00000003943	cpsf4	98	89.627	ENSCVAG00000016528	cpsf4	91	89.627	Cyprinodon_variegatus
ENSNBRG00000003943	cpsf4	98	83.806	ENSDARG00000020217	cpsf4	91	83.806	Danio_rerio
ENSNBRG00000003943	cpsf4	98	83.333	ENSDNOG00000006344	CPSF4	91	83.333	Dasypus_novemcinctus
ENSNBRG00000003943	cpsf4	86	83.028	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSNBRG00000003943	cpsf4	99	54.480	FBgn0015621	Clp	92	54.480	Drosophila_melanogaster
ENSNBRG00000003943	cpsf4	66	95.455	ENSETEG00000002608	CPSF4	61	95.455	Echinops_telfairi
ENSNBRG00000003943	cpsf4	97	65.690	ENSEBUG00000012552	cpsf4	88	65.690	Eptatretus_burgeri
ENSNBRG00000003943	cpsf4	98	79.253	ENSEASG00005002487	CPSF4	90	79.253	Equus_asinus_asinus
ENSNBRG00000003943	cpsf4	98	83.333	ENSECAG00000007525	CPSF4	91	83.333	Equus_caballus
ENSNBRG00000003943	cpsf4	67	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSNBRG00000003943	cpsf4	98	85.484	ENSELUG00000011481	cpsf4	91	85.484	Esox_lucius
ENSNBRG00000003943	cpsf4	98	83.333	ENSFCAG00000015070	CPSF4	91	83.333	Felis_catus
ENSNBRG00000003943	cpsf4	59	55.263	ENSFALG00000012906	-	88	55.263	Ficedula_albicollis
ENSNBRG00000003943	cpsf4	98	78.838	ENSFALG00000013799	CPSF4	90	78.838	Ficedula_albicollis
ENSNBRG00000003943	cpsf4	97	82.787	ENSFDAG00000014092	CPSF4	100	82.787	Fukomys_damarensis
ENSNBRG00000003943	cpsf4	98	90.456	ENSFHEG00000010880	cpsf4	91	90.456	Fundulus_heteroclitus
ENSNBRG00000003943	cpsf4	99	78.486	ENSGMOG00000002330	cpsf4	93	78.486	Gadus_morhua
ENSNBRG00000003943	cpsf4	98	78.838	ENSGALG00000004714	CPSF4	90	78.838	Gallus_gallus
ENSNBRG00000003943	cpsf4	72	37.500	ENSGALG00000004441	-	92	37.500	Gallus_gallus
ENSNBRG00000003943	cpsf4	98	88.382	ENSGAFG00000010580	cpsf4	91	88.382	Gambusia_affinis
ENSNBRG00000003943	cpsf4	98	85.656	ENSGACG00000007792	cpsf4	91	85.656	Gasterosteus_aculeatus
ENSNBRG00000003943	cpsf4	98	83.333	ENSGAGG00000021835	CPSF4	91	83.333	Gopherus_agassizii
ENSNBRG00000003943	cpsf4	63	79.355	ENSGAGG00000020579	-	85	79.355	Gopherus_agassizii
ENSNBRG00000003943	cpsf4	98	83.740	ENSGGOG00000015131	CPSF4	91	83.740	Gorilla_gorilla
ENSNBRG00000003943	cpsf4	98	99.170	ENSHBUG00000013699	cpsf4	91	99.170	Haplochromis_burtoni
ENSNBRG00000003943	cpsf4	98	82.591	ENSHGLG00000017150	CPSF4	91	82.591	Heterocephalus_glaber_female
ENSNBRG00000003943	cpsf4	93	80.508	ENSHGLG00100009215	-	100	80.508	Heterocephalus_glaber_male
ENSNBRG00000003943	cpsf4	62	62.092	ENSHGLG00100017302	-	75	62.651	Heterocephalus_glaber_male
ENSNBRG00000003943	cpsf4	98	88.430	ENSHCOG00000004397	cpsf4	91	88.430	Hippocampus_comes
ENSNBRG00000003943	cpsf4	98	84.211	ENSIPUG00000017147	cpsf4	91	85.425	Ictalurus_punctatus
ENSNBRG00000003943	cpsf4	98	83.333	ENSSTOG00000001688	CPSF4	91	83.333	Ictidomys_tridecemlineatus
ENSNBRG00000003943	cpsf4	98	83.333	ENSJJAG00000019426	Cpsf4	91	83.333	Jaculus_jaculus
ENSNBRG00000003943	cpsf4	98	88.797	ENSKMAG00000015642	cpsf4	91	88.797	Kryptolebias_marmoratus
ENSNBRG00000003943	cpsf4	98	82.591	ENSLACG00000010938	CPSF4	91	82.591	Latimeria_chalumnae
ENSNBRG00000003943	cpsf4	97	60.417	ENSLACG00000018470	-	89	60.417	Latimeria_chalumnae
ENSNBRG00000003943	cpsf4	98	79.675	ENSLOCG00000004814	cpsf4	91	81.224	Lepisosteus_oculatus
ENSNBRG00000003943	cpsf4	98	83.740	ENSLAFG00000000159	CPSF4	91	83.740	Loxodonta_africana
ENSNBRG00000003943	cpsf4	98	83.740	ENSMFAG00000001462	CPSF4	100	79.245	Macaca_fascicularis
ENSNBRG00000003943	cpsf4	98	83.740	ENSMMUG00000019191	CPSF4	91	83.740	Macaca_mulatta
ENSNBRG00000003943	cpsf4	98	83.740	ENSMNEG00000032306	CPSF4	91	83.740	Macaca_nemestrina
ENSNBRG00000003943	cpsf4	98	83.740	ENSMLEG00000034721	CPSF4	91	83.740	Mandrillus_leucophaeus
ENSNBRG00000003943	cpsf4	98	93.388	ENSMAMG00000006244	cpsf4	91	93.388	Mastacembelus_armatus
ENSNBRG00000003943	cpsf4	98	99.170	ENSMZEG00005007515	cpsf4	91	99.170	Maylandia_zebra
ENSNBRG00000003943	cpsf4	94	77.922	ENSMGAG00000004235	CPSF4	100	77.922	Meleagris_gallopavo
ENSNBRG00000003943	cpsf4	98	83.333	ENSMAUG00000021253	Cpsf4	91	83.333	Mesocricetus_auratus
ENSNBRG00000003943	cpsf4	98	83.740	ENSMICG00000017429	CPSF4	91	83.740	Microcebus_murinus
ENSNBRG00000003943	cpsf4	98	83.333	ENSMOCG00000014901	Cpsf4	91	83.333	Microtus_ochrogaster
ENSNBRG00000003943	cpsf4	98	91.322	ENSMMOG00000001813	cpsf4	91	91.322	Mola_mola
ENSNBRG00000003943	cpsf4	98	84.553	ENSMODG00000001367	CPSF4	91	84.553	Monodelphis_domestica
ENSNBRG00000003943	cpsf4	98	91.736	ENSMALG00000012611	cpsf4	91	91.736	Monopterus_albus
ENSNBRG00000003943	cpsf4	98	83.333	MGP_CAROLIEiJ_G0028012	Cpsf4	91	83.333	Mus_caroli
ENSNBRG00000003943	cpsf4	98	83.333	ENSMUSG00000029625	Cpsf4	91	83.333	Mus_musculus
ENSNBRG00000003943	cpsf4	98	83.333	MGP_PahariEiJ_G0024581	Cpsf4	91	83.333	Mus_pahari
ENSNBRG00000003943	cpsf4	98	83.740	MGP_SPRETEiJ_G0029013	Cpsf4	91	83.740	Mus_spretus
ENSNBRG00000003943	cpsf4	98	83.333	ENSMPUG00000016508	CPSF4	91	83.333	Mustela_putorius_furo
ENSNBRG00000003943	cpsf4	94	77.922	ENSMLUG00000010980	CPSF4	100	77.922	Myotis_lucifugus
ENSNBRG00000003943	cpsf4	98	83.333	ENSNGAG00000001567	Cpsf4	91	83.333	Nannospalax_galili
ENSNBRG00000003943	cpsf4	98	81.557	ENSNLEG00000011074	CPSF4	91	81.557	Nomascus_leucogenys
ENSNBRG00000003943	cpsf4	98	84.553	ENSMEUG00000006955	CPSF4	91	84.553	Notamacropus_eugenii
ENSNBRG00000003943	cpsf4	98	82.927	ENSOPRG00000013663	CPSF4	91	82.927	Ochotona_princeps
ENSNBRG00000003943	cpsf4	96	67.511	ENSODEG00000018283	-	81	67.511	Octodon_degus
ENSNBRG00000003943	cpsf4	98	83.333	ENSODEG00000011181	-	91	83.333	Octodon_degus
ENSNBRG00000003943	cpsf4	98	64.372	ENSODEG00000009779	-	92	64.372	Octodon_degus
ENSNBRG00000003943	cpsf4	98	98.340	ENSONIG00000008495	cpsf4	91	98.340	Oreochromis_niloticus
ENSNBRG00000003943	cpsf4	94	82.979	ENSOANG00000007729	CPSF4	100	82.979	Ornithorhynchus_anatinus
ENSNBRG00000003943	cpsf4	98	52.157	ENSOANG00000009568	-	91	52.157	Ornithorhynchus_anatinus
ENSNBRG00000003943	cpsf4	98	82.927	ENSOCUG00000002437	CPSF4	65	81.275	Oryctolagus_cuniculus
ENSNBRG00000003943	cpsf4	98	91.701	ENSORLG00000022798	cpsf4	91	91.701	Oryzias_latipes
ENSNBRG00000003943	cpsf4	98	91.701	ENSORLG00020008548	cpsf4	91	91.701	Oryzias_latipes_hni
ENSNBRG00000003943	cpsf4	98	91.701	ENSORLG00015019575	cpsf4	91	91.701	Oryzias_latipes_hsok
ENSNBRG00000003943	cpsf4	98	90.871	ENSOMEG00000005176	cpsf4	91	90.871	Oryzias_melastigma
ENSNBRG00000003943	cpsf4	98	83.740	ENSOGAG00000010884	CPSF4	91	83.740	Otolemur_garnettii
ENSNBRG00000003943	cpsf4	98	72.000	ENSOARG00000018668	CPSF4	91	72.000	Ovis_aries
ENSNBRG00000003943	cpsf4	98	83.740	ENSPPAG00000043355	CPSF4	91	83.740	Pan_paniscus
ENSNBRG00000003943	cpsf4	98	83.333	ENSPPRG00000003134	CPSF4	91	83.333	Panthera_pardus
ENSNBRG00000003943	cpsf4	96	83.539	ENSPTIG00000005604	CPSF4	90	83.539	Panthera_tigris_altaica
ENSNBRG00000003943	cpsf4	98	83.740	ENSPTRG00000019453	CPSF4	91	83.740	Pan_troglodytes
ENSNBRG00000003943	cpsf4	98	83.740	ENSPANG00000023123	CPSF4	91	83.740	Papio_anubis
ENSNBRG00000003943	cpsf4	98	82.800	ENSPKIG00000014278	cpsf4	91	82.800	Paramormyrops_kingsleyae
ENSNBRG00000003943	cpsf4	87	59.813	ENSPSIG00000018198	-	100	59.813	Pelodiscus_sinensis
ENSNBRG00000003943	cpsf4	86	82.488	ENSPSIG00000011229	CPSF4	100	82.488	Pelodiscus_sinensis
ENSNBRG00000003943	cpsf4	99	76.829	ENSPMGG00000017735	cpsf4	92	76.829	Periophthalmus_magnuspinnatus
ENSNBRG00000003943	cpsf4	98	83.333	ENSPEMG00000004508	Cpsf4	91	83.333	Peromyscus_maniculatus_bairdii
ENSNBRG00000003943	cpsf4	98	84.553	ENSPCIG00000024776	CPSF4	91	84.553	Phascolarctos_cinereus
ENSNBRG00000003943	cpsf4	98	88.382	ENSPFOG00000014912	cpsf4	91	88.382	Poecilia_formosa
ENSNBRG00000003943	cpsf4	98	80.498	ENSPLAG00000009599	cpsf4	90	80.498	Poecilia_latipinna
ENSNBRG00000003943	cpsf4	98	88.382	ENSPMEG00000009790	cpsf4	91	88.382	Poecilia_mexicana
ENSNBRG00000003943	cpsf4	98	87.967	ENSPREG00000018166	cpsf4	91	87.967	Poecilia_reticulata
ENSNBRG00000003943	cpsf4	93	82.979	ENSPPYG00000017378	CPSF4	100	82.979	Pongo_abelii
ENSNBRG00000003943	cpsf4	98	83.333	ENSPCAG00000001892	CPSF4	91	83.333	Procavia_capensis
ENSNBRG00000003943	cpsf4	98	83.333	ENSPCOG00000012771	CPSF4	91	83.333	Propithecus_coquereli
ENSNBRG00000003943	cpsf4	98	77.642	ENSPVAG00000007531	CPSF4	91	77.642	Pteropus_vampyrus
ENSNBRG00000003943	cpsf4	98	99.170	ENSPNYG00000018559	cpsf4	91	99.170	Pundamilia_nyererei
ENSNBRG00000003943	cpsf4	98	84.959	ENSPNAG00000003736	cpsf4	91	84.959	Pygocentrus_nattereri
ENSNBRG00000003943	cpsf4	98	78.838	ENSRNOG00000000985	Cpsf4	90	78.838	Rattus_norvegicus
ENSNBRG00000003943	cpsf4	93	83.404	ENSRBIG00000033886	CPSF4	100	83.404	Rhinopithecus_bieti
ENSNBRG00000003943	cpsf4	98	79.668	ENSRROG00000040431	CPSF4	90	79.668	Rhinopithecus_roxellana
ENSNBRG00000003943	cpsf4	98	83.740	ENSSBOG00000020493	CPSF4	100	79.245	Saimiri_boliviensis_boliviensis
ENSNBRG00000003943	cpsf4	98	84.553	ENSSHAG00000011533	CPSF4	91	84.553	Sarcophilus_harrisii
ENSNBRG00000003943	cpsf4	98	81.349	ENSSFOG00015007883	cpsf4	91	80.784	Scleropages_formosus
ENSNBRG00000003943	cpsf4	98	83.884	ENSSMAG00000006374	cpsf4	90	83.884	Scophthalmus_maximus
ENSNBRG00000003943	cpsf4	98	93.388	ENSSDUG00000018887	cpsf4	91	93.388	Seriola_dumerili
ENSNBRG00000003943	cpsf4	98	93.388	ENSSLDG00000019078	cpsf4	91	93.388	Seriola_lalandi_dorsalis
ENSNBRG00000003943	cpsf4	93	83.404	ENSSARG00000012416	CPSF4	100	83.404	Sorex_araneus
ENSNBRG00000003943	cpsf4	98	82.114	ENSSPUG00000003549	CPSF4	91	82.114	Sphenodon_punctatus
ENSNBRG00000003943	cpsf4	92	60.793	ENSSPUG00000014803	-	85	60.793	Sphenodon_punctatus
ENSNBRG00000003943	cpsf4	98	85.062	ENSSPAG00000006174	cpsf4	90	85.062	Stegastes_partitus
ENSNBRG00000003943	cpsf4	98	79.668	ENSSSCG00000026896	CPSF4	90	79.668	Sus_scrofa
ENSNBRG00000003943	cpsf4	98	77.778	ENSTGUG00000007552	CPSF4	90	77.778	Taeniopygia_guttata
ENSNBRG00000003943	cpsf4	98	87.603	ENSTRUG00000024220	cpsf4	91	87.603	Takifugu_rubripes
ENSNBRG00000003943	cpsf4	98	88.382	ENSTNIG00000006265	cpsf4	91	88.797	Tetraodon_nigroviridis
ENSNBRG00000003943	cpsf4	93	74.894	ENSTBEG00000011406	CPSF4	100	74.894	Tupaia_belangeri
ENSNBRG00000003943	cpsf4	98	71.429	ENSTTRG00000003007	CPSF4	91	71.429	Tursiops_truncatus
ENSNBRG00000003943	cpsf4	89	77.169	ENSUAMG00000008051	CPSF4	76	77.169	Ursus_americanus
ENSNBRG00000003943	cpsf4	98	78.838	ENSUMAG00000009474	CPSF4	90	78.838	Ursus_maritimus
ENSNBRG00000003943	cpsf4	98	79.253	ENSVVUG00000008824	CPSF4	90	79.253	Vulpes_vulpes
ENSNBRG00000003943	cpsf4	98	77.647	ENSXETG00000009892	cpsf4	91	77.647	Xenopus_tropicalis
ENSNBRG00000003943	cpsf4	95	59.751	ENSXETG00000004641	cpsf4l	89	59.751	Xenopus_tropicalis
ENSNBRG00000003943	cpsf4	98	87.967	ENSXCOG00000016040	cpsf4	91	87.967	Xiphophorus_couchianus
ENSNBRG00000003943	cpsf4	98	88.382	ENSXMAG00000024670	cpsf4	91	88.382	Xiphophorus_maculatus