EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000003952 (Gene tree)
Gene ID: 102778097
Gene Symbol: polr2c
Alias: wu:fk48d01
Full Name: DNA-directed RNA polymerase II subunit RPB3-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 4816 bases
Position: chrJH422542.1:173714-178529
Accession: 102778097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000005134	RNA_pol_A_bac	PF01000.26	6.6e-23	1	1
ENSNBRP00000005171	RNA_pol_A_bac	PF01000.26	2.2e-22	1	1
ENSNBRP00000005157	RNA_pol_A_bac	PF01000.26	2.5e-22	1	1
ENSNBRP00000005171	RNA_pol_L	PF01193.24	2.7e-16	1	1
ENSNBRP00000005134	RNA_pol_L	PF01193.24	4.8e-16	1	1
ENSNBRP00000005157	RNA_pol_L	PF01193.24	6.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000005328	-	582	XM_006809105	ENSNBRP00000005171	193 (aa)	XP_006809168	-
ENSNBRT00000005289	-	615	-	ENSNBRP00000005134	204 (aa)	-	-
ENSNBRT00000005314	-	585	-	ENSNBRP00000005157	194 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000003952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000003952's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000003952	polr2c	94	89.583	ENSG00000102978	POLR2C	100	84.783	Homo_sapiens
ENSNBRG00000003952	polr2c	53	30.392	ENSG00000171453	POLR1C	75	34.375	Homo_sapiens
ENSNBRG00000003952	polr2c	94	95.833	ENSAPOG00000011708	polr2c	66	95.833	Acanthochromis_polyacanthus
ENSNBRG00000003952	polr2c	94	89.583	ENSAMEG00000017026	POLR2C	66	89.583	Ailuropoda_melanoleuca
ENSNBRG00000003952	polr2c	94	100.000	ENSACIG00000012060	polr2c	66	100.000	Amphilophus_citrinellus
ENSNBRG00000003952	polr2c	79	95.833	ENSAOCG00000018000	-	58	95.833	Amphiprion_ocellaris
ENSNBRG00000003952	polr2c	94	95.833	ENSAOCG00000010477	-	66	95.833	Amphiprion_ocellaris
ENSNBRG00000003952	polr2c	94	95.833	ENSAOCG00000015665	polr2c	66	95.833	Amphiprion_ocellaris
ENSNBRG00000003952	polr2c	94	95.833	ENSAPEG00000007221	polr2c	66	95.833	Amphiprion_percula
ENSNBRG00000003952	polr2c	94	94.737	ENSATEG00000007143	polr2c	65	96.212	Anabas_testudineus
ENSNBRG00000003952	polr2c	91	89.583	ENSAPLG00000005385	POLR2C	64	89.583	Anas_platyrhynchos
ENSNBRG00000003952	polr2c	94	89.583	ENSACAG00000007514	-	66	89.583	Anolis_carolinensis
ENSNBRG00000003952	polr2c	67	68.992	ENSACAG00000011302	-	60	68.939	Anolis_carolinensis
ENSNBRG00000003952	polr2c	94	89.583	ENSANAG00000005302	POLR2C	66	89.583	Aotus_nancymaae
ENSNBRG00000003952	polr2c	94	100.000	ENSACLG00000004854	polr2c	66	100.000	Astatotilapia_calliptera
ENSNBRG00000003952	polr2c	94	93.750	ENSAMXG00000012805	polr2c	66	93.750	Astyanax_mexicanus
ENSNBRG00000003952	polr2c	94	89.583	ENSBTAG00000001856	POLR2C	66	89.583	Bos_taurus
ENSNBRG00000003952	polr2c	94	89.583	ENSCJAG00000012016	POLR2C	66	89.583	Callithrix_jacchus
ENSNBRG00000003952	polr2c	94	89.583	ENSCAFG00000008720	POLR2C	66	89.583	Canis_familiaris
ENSNBRG00000003952	polr2c	94	89.583	ENSCAFG00020007660	POLR2C	66	89.583	Canis_lupus_dingo
ENSNBRG00000003952	polr2c	94	89.583	ENSCHIG00000012072	POLR2C	66	89.583	Capra_hircus
ENSNBRG00000003952	polr2c	94	85.714	ENSTSYG00000011076	POLR2C	65	87.234	Carlito_syrichta
ENSNBRG00000003952	polr2c	94	89.583	ENSCPOG00000004554	POLR2C	66	89.583	Cavia_porcellus
ENSNBRG00000003952	polr2c	94	89.583	ENSCCAG00000035768	POLR2C	66	89.583	Cebus_capucinus
ENSNBRG00000003952	polr2c	94	89.583	ENSCATG00000040803	POLR2C	66	89.583	Cercocebus_atys
ENSNBRG00000003952	polr2c	94	89.583	ENSCLAG00000013676	POLR2C	66	89.583	Chinchilla_lanigera
ENSNBRG00000003952	polr2c	94	89.583	ENSCSAG00000004901	POLR2C	66	89.583	Chlorocebus_sabaeus
ENSNBRG00000003952	polr2c	94	89.583	ENSCHOG00000002986	POLR2C	65	89.583	Choloepus_hoffmanni
ENSNBRG00000003952	polr2c	79	89.583	ENSCPBG00000022758	POLR2C	57	89.583	Chrysemys_picta_bellii
ENSNBRG00000003952	polr2c	87	75.000	ENSCING00000021895	-	59	75.000	Ciona_intestinalis
ENSNBRG00000003952	polr2c	94	68.421	ENSCSAVG00000002167	-	66	68.421	Ciona_savignyi
ENSNBRG00000003952	polr2c	94	89.583	ENSCANG00000034876	POLR2C	66	89.583	Colobus_angolensis_palliatus
ENSNBRG00000003952	polr2c	94	89.583	ENSCGRG00001019477	Polr2c	66	89.583	Cricetulus_griseus_chok1gshd
ENSNBRG00000003952	polr2c	94	89.583	ENSCGRG00000013273	Polr2c	66	89.583	Cricetulus_griseus_crigri
ENSNBRG00000003952	polr2c	94	93.985	ENSCSEG00000001719	polr2c	65	95.455	Cynoglossus_semilaevis
ENSNBRG00000003952	polr2c	94	95.489	ENSCVAG00000004718	-	65	96.970	Cyprinodon_variegatus
ENSNBRG00000003952	polr2c	69	95.489	ENSCVAG00000017931	polr2c	53	96.970	Cyprinodon_variegatus
ENSNBRG00000003952	polr2c	67	32.143	ENSDARG00000039400	polr1c	61	31.061	Danio_rerio
ENSNBRG00000003952	polr2c	94	93.750	ENSDARG00000033596	polr2c	66	93.750	Danio_rerio
ENSNBRG00000003952	polr2c	86	60.177	ENSDNOG00000036028	-	100	43.568	Dasypus_novemcinctus
ENSNBRG00000003952	polr2c	94	89.583	ENSDNOG00000030752	-	53	89.583	Dasypus_novemcinctus
ENSNBRG00000003952	polr2c	94	89.583	ENSDORG00000000081	Polr2c	66	89.583	Dipodomys_ordii
ENSNBRG00000003952	polr2c	99	69.173	FBgn0026373	RpII33	78	69.173	Drosophila_melanogaster
ENSNBRG00000003952	polr2c	94	85.714	ENSETEG00000004185	POLR2C	65	87.234	Echinops_telfairi
ENSNBRG00000003952	polr2c	94	79.592	ENSEBUG00000016262	polr2c	63	79.592	Eptatretus_burgeri
ENSNBRG00000003952	polr2c	94	87.500	ENSEASG00005005406	POLR2C	65	88.636	Equus_asinus_asinus
ENSNBRG00000003952	polr2c	94	89.583	ENSECAG00000015818	POLR2C	66	89.583	Equus_caballus
ENSNBRG00000003952	polr2c	94	87.755	ENSEEUG00000003658	POLR2C	65	89.362	Erinaceus_europaeus
ENSNBRG00000003952	polr2c	93	93.750	ENSELUG00000012259	polr2c	67	93.750	Esox_lucius
ENSNBRG00000003952	polr2c	94	89.583	ENSFCAG00000034622	POLR2C	66	89.583	Felis_catus
ENSNBRG00000003952	polr2c	94	89.583	ENSFALG00000006931	POLR2C	66	89.583	Ficedula_albicollis
ENSNBRG00000003952	polr2c	94	89.583	ENSFDAG00000008641	POLR2C	65	89.583	Fukomys_damarensis
ENSNBRG00000003952	polr2c	94	95.489	ENSFHEG00000020739	polr2c	65	96.970	Fundulus_heteroclitus
ENSNBRG00000003952	polr2c	94	93.750	ENSGMOG00000004203	polr2c	66	93.750	Gadus_morhua
ENSNBRG00000003952	polr2c	94	89.583	ENSGALG00000001168	POLR2C	66	89.583	Gallus_gallus
ENSNBRG00000003952	polr2c	94	95.489	ENSGAFG00000021951	polr2c	65	96.970	Gambusia_affinis
ENSNBRG00000003952	polr2c	94	95.833	ENSGACG00000002194	polr2c	66	95.833	Gasterosteus_aculeatus
ENSNBRG00000003952	polr2c	79	89.583	ENSGAGG00000016942	POLR2C	54	89.583	Gopherus_agassizii
ENSNBRG00000003952	polr2c	94	89.583	ENSGGOG00000012415	POLR2C	66	89.583	Gorilla_gorilla
ENSNBRG00000003952	polr2c	94	100.000	ENSHBUG00000023040	polr2c	66	100.000	Haplochromis_burtoni
ENSNBRG00000003952	polr2c	94	89.583	ENSHGLG00000013465	POLR2C	66	89.583	Heterocephalus_glaber_female
ENSNBRG00000003952	polr2c	94	89.583	ENSHGLG00100011949	POLR2C	66	89.583	Heterocephalus_glaber_male
ENSNBRG00000003952	polr2c	94	93.750	ENSHCOG00000007066	polr2c	66	93.750	Hippocampus_comes
ENSNBRG00000003952	polr2c	94	95.833	ENSIPUG00000009231	polr2c	66	95.833	Ictalurus_punctatus
ENSNBRG00000003952	polr2c	94	89.583	ENSSTOG00000015150	-	66	89.583	Ictidomys_tridecemlineatus
ENSNBRG00000003952	polr2c	89	87.500	ENSSTOG00000031354	-	64	87.500	Ictidomys_tridecemlineatus
ENSNBRG00000003952	polr2c	94	89.583	ENSJJAG00000023057	Polr2c	66	89.583	Jaculus_jaculus
ENSNBRG00000003952	polr2c	94	96.241	ENSKMAG00000016196	polr2c	65	97.727	Kryptolebias_marmoratus
ENSNBRG00000003952	polr2c	94	93.750	ENSLBEG00000007369	polr2c	66	93.750	Labrus_bergylta
ENSNBRG00000003952	polr2c	94	87.500	ENSLACG00000003703	POLR2C	56	87.500	Latimeria_chalumnae
ENSNBRG00000003952	polr2c	94	95.833	ENSLOCG00000003215	polr2c	66	95.833	Lepisosteus_oculatus
ENSNBRG00000003952	polr2c	94	89.583	ENSLAFG00000027230	POLR2C	66	89.583	Loxodonta_africana
ENSNBRG00000003952	polr2c	94	89.583	ENSMFAG00000016861	POLR2C	66	89.583	Macaca_fascicularis
ENSNBRG00000003952	polr2c	94	89.583	ENSMMUG00000020474	POLR2C	66	89.583	Macaca_mulatta
ENSNBRG00000003952	polr2c	94	89.583	ENSMNEG00000033565	POLR2C	66	89.583	Macaca_nemestrina
ENSNBRG00000003952	polr2c	94	89.583	ENSMLEG00000032412	POLR2C	66	89.583	Mandrillus_leucophaeus
ENSNBRG00000003952	polr2c	94	95.833	ENSMAMG00000013205	polr2c	65	96.970	Mastacembelus_armatus
ENSNBRG00000003952	polr2c	94	100.000	ENSMZEG00005015329	polr2c	66	100.000	Maylandia_zebra
ENSNBRG00000003952	polr2c	90	80.488	ENSMAUG00000019031	-	100	51.779	Mesocricetus_auratus
ENSNBRG00000003952	polr2c	91	89.362	ENSMAUG00000000779	-	100	64.940	Mesocricetus_auratus
ENSNBRG00000003952	polr2c	94	89.583	ENSMICG00000045178	POLR2C	66	89.583	Microcebus_murinus
ENSNBRG00000003952	polr2c	94	87.500	ENSMOCG00000013652	Polr2c	66	87.500	Microtus_ochrogaster
ENSNBRG00000003952	polr2c	94	95.833	ENSMMOG00000010560	polr2c	66	95.833	Mola_mola
ENSNBRG00000003952	polr2c	94	87.500	ENSMODG00000013540	POLR2C	65	88.636	Monodelphis_domestica
ENSNBRG00000003952	polr2c	94	95.833	ENSMALG00000004581	polr2c	65	96.970	Monopterus_albus
ENSNBRG00000003952	polr2c	94	89.583	MGP_CAROLIEiJ_G0031409	Polr2c	66	89.583	Mus_caroli
ENSNBRG00000003952	polr2c	94	89.583	ENSMUSG00000031783	Polr2c	66	89.583	Mus_musculus
ENSNBRG00000003952	polr2c	94	89.583	MGP_PahariEiJ_G0023007	Polr2c	66	89.583	Mus_pahari
ENSNBRG00000003952	polr2c	94	89.583	MGP_SPRETEiJ_G0032528	Polr2c	66	89.583	Mus_spretus
ENSNBRG00000003952	polr2c	94	89.583	ENSMPUG00000004483	POLR2C	66	89.583	Mustela_putorius_furo
ENSNBRG00000003952	polr2c	94	89.583	ENSMLUG00000029495	-	66	89.583	Myotis_lucifugus
ENSNBRG00000003952	polr2c	94	89.583	ENSMLUG00000015833	-	66	89.583	Myotis_lucifugus
ENSNBRG00000003952	polr2c	94	89.583	ENSMLUG00000025422	-	66	89.583	Myotis_lucifugus
ENSNBRG00000003952	polr2c	100	50.400	ENSNGAG00000010540	-	100	50.400	Nannospalax_galili
ENSNBRG00000003952	polr2c	94	89.583	ENSNGAG00000012249	-	66	89.583	Nannospalax_galili
ENSNBRG00000003952	polr2c	91	89.362	ENSNLEG00000003034	POLR2C	70	89.362	Nomascus_leucogenys
ENSNBRG00000003952	polr2c	94	87.500	ENSMEUG00000014741	POLR2C	66	87.500	Notamacropus_eugenii
ENSNBRG00000003952	polr2c	94	89.583	ENSOPRG00000006979	POLR2C	66	89.583	Ochotona_princeps
ENSNBRG00000003952	polr2c	94	89.583	ENSODEG00000016934	POLR2C	66	89.583	Octodon_degus
ENSNBRG00000003952	polr2c	94	100.000	ENSONIG00000010914	polr2c	66	100.000	Oreochromis_niloticus
ENSNBRG00000003952	polr2c	70	89.583	ENSOANG00000009337	POLR2C	59	89.583	Ornithorhynchus_anatinus
ENSNBRG00000003952	polr2c	94	89.583	ENSOCUG00000014984	POLR2C	66	89.583	Oryctolagus_cuniculus
ENSNBRG00000003952	polr2c	94	95.489	ENSORLG00000015108	polr2c	65	96.970	Oryzias_latipes
ENSNBRG00000003952	polr2c	94	96.241	ENSORLG00020013566	polr2c	65	97.727	Oryzias_latipes_hni
ENSNBRG00000003952	polr2c	94	95.489	ENSORLG00015003751	polr2c	65	96.970	Oryzias_latipes_hsok
ENSNBRG00000003952	polr2c	53	30.097	ENSOMEG00000016527	polr1c	53	30.097	Oryzias_melastigma
ENSNBRG00000003952	polr2c	94	96.241	ENSOMEG00000019444	polr2c	65	97.727	Oryzias_melastigma
ENSNBRG00000003952	polr2c	94	89.583	ENSOGAG00000016866	POLR2C	66	89.583	Otolemur_garnettii
ENSNBRG00000003952	polr2c	88	64.583	ENSOGAG00000029610	-	100	38.583	Otolemur_garnettii
ENSNBRG00000003952	polr2c	94	89.583	ENSOARG00000000302	POLR2C	66	89.583	Ovis_aries
ENSNBRG00000003952	polr2c	94	89.583	ENSPPAG00000042822	POLR2C	66	89.583	Pan_paniscus
ENSNBRG00000003952	polr2c	94	89.583	ENSPPRG00000003215	POLR2C	66	89.583	Panthera_pardus
ENSNBRG00000003952	polr2c	89	89.583	ENSPTIG00000010297	POLR2C	63	89.583	Panthera_tigris_altaica
ENSNBRG00000003952	polr2c	94	89.583	ENSPTRG00000008157	POLR2C	66	89.583	Pan_troglodytes
ENSNBRG00000003952	polr2c	94	89.583	ENSPANG00000006264	POLR2C	66	89.583	Papio_anubis
ENSNBRG00000003952	polr2c	94	93.985	ENSPKIG00000005228	polr2c	65	95.455	Paramormyrops_kingsleyae
ENSNBRG00000003952	polr2c	79	89.583	ENSPSIG00000016112	POLR2C	56	89.583	Pelodiscus_sinensis
ENSNBRG00000003952	polr2c	69	92.481	ENSPMGG00000021249	polr2c	54	93.939	Periophthalmus_magnuspinnatus
ENSNBRG00000003952	polr2c	94	89.583	ENSPEMG00000014204	Polr2c	66	89.583	Peromyscus_maniculatus_bairdii
ENSNBRG00000003952	polr2c	66	84.375	ENSPMAG00000004827	polr2c	58	83.333	Petromyzon_marinus
ENSNBRG00000003952	polr2c	94	87.500	ENSPCIG00000015111	POLR2C	66	87.500	Phascolarctos_cinereus
ENSNBRG00000003952	polr2c	94	95.489	ENSPFOG00000024666	polr2c	65	96.970	Poecilia_formosa
ENSNBRG00000003952	polr2c	94	95.489	ENSPLAG00000019750	polr2c	65	96.970	Poecilia_latipinna
ENSNBRG00000003952	polr2c	94	95.489	ENSPMEG00000001741	polr2c	65	96.970	Poecilia_mexicana
ENSNBRG00000003952	polr2c	94	93.750	ENSPREG00000003090	polr2c	66	93.750	Poecilia_reticulata
ENSNBRG00000003952	polr2c	94	89.583	ENSPPYG00000007390	POLR2C	66	89.583	Pongo_abelii
ENSNBRG00000003952	polr2c	70	89.583	ENSPCAG00000002423	POLR2C	59	89.583	Procavia_capensis
ENSNBRG00000003952	polr2c	94	89.583	ENSPCOG00000017282	POLR2C	66	89.583	Propithecus_coquereli
ENSNBRG00000003952	polr2c	94	89.583	ENSPVAG00000001399	POLR2C	66	89.583	Pteropus_vampyrus
ENSNBRG00000003952	polr2c	94	100.000	ENSPNYG00000003756	polr2c	66	100.000	Pundamilia_nyererei
ENSNBRG00000003952	polr2c	94	93.985	ENSPNAG00000012133	polr2c	65	95.455	Pygocentrus_nattereri
ENSNBRG00000003952	polr2c	94	89.583	ENSRNOG00000015720	Polr2c	66	89.583	Rattus_norvegicus
ENSNBRG00000003952	polr2c	94	89.583	ENSRBIG00000026549	POLR2C	66	89.583	Rhinopithecus_bieti
ENSNBRG00000003952	polr2c	94	89.583	ENSRROG00000045745	POLR2C	66	89.583	Rhinopithecus_roxellana
ENSNBRG00000003952	polr2c	94	89.583	ENSSBOG00000030004	POLR2C	66	89.583	Saimiri_boliviensis_boliviensis
ENSNBRG00000003952	polr2c	94	95.833	ENSSFOG00015023460	polr2c	65	96.970	Scleropages_formosus
ENSNBRG00000003952	polr2c	94	95.833	ENSSMAG00000002827	polr2c	53	95.833	Scophthalmus_maximus
ENSNBRG00000003952	polr2c	94	94.737	ENSSDUG00000003354	polr2c	65	96.212	Seriola_dumerili
ENSNBRG00000003952	polr2c	94	94.737	ENSSLDG00000003555	polr2c	65	96.212	Seriola_lalandi_dorsalis
ENSNBRG00000003952	polr2c	94	89.583	ENSSPUG00000012934	POLR2C	66	89.583	Sphenodon_punctatus
ENSNBRG00000003952	polr2c	94	95.833	ENSSPAG00000005108	polr2c	66	95.833	Stegastes_partitus
ENSNBRG00000003952	polr2c	94	89.583	ENSSSCG00000025454	POLR2C	66	89.583	Sus_scrofa
ENSNBRG00000003952	polr2c	68	89.313	ENSTGUG00000017035	-	100	89.394	Taeniopygia_guttata
ENSNBRG00000003952	polr2c	94	89.583	ENSTGUG00000004996	POLR2C	66	89.583	Taeniopygia_guttata
ENSNBRG00000003952	polr2c	100	93.233	ENSTRUG00000004676	polr2c	76	93.233	Takifugu_rubripes
ENSNBRG00000003952	polr2c	94	93.233	ENSTNIG00000008851	polr2c	65	94.697	Tetraodon_nigroviridis
ENSNBRG00000003952	polr2c	94	89.583	ENSTBEG00000009442	POLR2C	66	89.583	Tupaia_belangeri
ENSNBRG00000003952	polr2c	70	89.583	ENSTTRG00000010060	POLR2C	59	89.583	Tursiops_truncatus
ENSNBRG00000003952	polr2c	94	89.583	ENSUAMG00000014170	POLR2C	66	89.583	Ursus_americanus
ENSNBRG00000003952	polr2c	81	89.583	ENSUMAG00000021686	POLR2C	60	89.583	Ursus_maritimus
ENSNBRG00000003952	polr2c	92	89.583	ENSVVUG00000023516	-	69	89.362	Vulpes_vulpes
ENSNBRG00000003952	polr2c	98	87.755	ENSXETG00000013784	polr2c	66	87.755	Xenopus_tropicalis
ENSNBRG00000003952	polr2c	94	95.489	ENSXCOG00000020734	polr2c	65	96.970	Xiphophorus_couchianus
ENSNBRG00000003952	polr2c	94	95.489	ENSXMAG00000015984	polr2c	65	96.970	Xiphophorus_maculatus