EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000004089 (Gene tree)
Gene ID: 102777498
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specificity factor subunit 6-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 16300 bases
Position: chrJH422274.1:6824546-6840845
Accession: 102777498
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000005145	RRM_1	PF00076.22	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000005301	-	5572	XM_006780687	ENSNBRP00000005145	550 (aa)	XP_006780750	UPI0003EBDAE0

Gene Model

Click here to download ENSNBRG00000004089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000004089's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000004089	cpsf6	95	41.636	ENSG00000149532	CPSF7	100	49.333	Homo_sapiens
ENSNBRG00000004089	cpsf6	94	81.644	ENSG00000111605	CPSF6	84	83.333	Homo_sapiens
ENSNBRG00000004089	cpsf6	100	95.122	ENSACIG00000018413	cpsf6	100	95.122	Amphilophus_citrinellus
ENSNBRG00000004089	cpsf6	100	96.727	ENSAOCG00000017865	cpsf6	100	96.727	Amphiprion_ocellaris
ENSNBRG00000004089	cpsf6	100	93.345	ENSACLG00000026325	cpsf6	100	93.345	Astatotilapia_calliptera
ENSNBRG00000004089	cpsf6	95	80.614	ENSAMXG00000016745	CPSF6	75	91.566	Astyanax_mexicanus
ENSNBRG00000004089	cpsf6	95	41.636	ENSCJAG00000019282	CPSF7	75	64.122	Callithrix_jacchus
ENSNBRG00000004089	cpsf6	91	81.151	ENSCAFG00000000424	CPSF6	72	81.529	Canis_familiaris
ENSNBRG00000004089	cpsf6	91	81.113	ENSTSYG00000008591	CPSF6	75	84.231	Carlito_syrichta
ENSNBRG00000004089	cpsf6	95	33.638	ENSCGRG00001020382	Cpsf7	71	58.382	Cricetulus_griseus_chok1gshd
ENSNBRG00000004089	cpsf6	95	42.144	ENSCGRG00000017954	Cpsf7	73	58.382	Cricetulus_griseus_crigri
ENSNBRG00000004089	cpsf6	52	40.206	ENSCSEG00000001956	CPSF7	75	40.206	Cynoglossus_semilaevis
ENSNBRG00000004089	cpsf6	94	95.376	ENSCSEG00000008967	cpsf6	94	95.376	Cynoglossus_semilaevis
ENSNBRG00000004089	cpsf6	94	91.329	ENSCVAG00000014857	cpsf6	94	91.329	Cyprinodon_variegatus
ENSNBRG00000004089	cpsf6	70	36.036	ENSCVAG00000007392	CPSF7	81	39.153	Cyprinodon_variegatus
ENSNBRG00000004089	cpsf6	74	60.630	ENSDNOG00000018517	CPSF7	75	64.885	Dasypus_novemcinctus
ENSNBRG00000004089	cpsf6	50	62.393	ENSEEUG00000005966	-	66	62.931	Erinaceus_europaeus
ENSNBRG00000004089	cpsf6	95	33.698	ENSFCAG00000013677	CPSF7	77	64.885	Felis_catus
ENSNBRG00000004089	cpsf6	71	46.667	ENSFALG00000011927	CPSF7	76	54.335	Ficedula_albicollis
ENSNBRG00000004089	cpsf6	95	41.405	ENSFDAG00000003919	CPSF7	71	57.803	Fukomys_damarensis
ENSNBRG00000004089	cpsf6	59	96.689	ENSGMOG00000012951	cpsf6	59	96.689	Gadus_morhua
ENSNBRG00000004089	cpsf6	95	41.296	ENSGALG00000040962	CPSF7	63	56.647	Gallus_gallus
ENSNBRG00000004089	cpsf6	100	99.636	ENSHBUG00000005998	cpsf6	100	99.636	Haplochromis_burtoni
ENSNBRG00000004089	cpsf6	88	38.742	ENSHGLG00100013933	-	73	57.803	Heterocephalus_glaber_male
ENSNBRG00000004089	cpsf6	94	93.642	ENSKMAG00000014794	cpsf6	94	93.834	Kryptolebias_marmoratus
ENSNBRG00000004089	cpsf6	57	40.972	ENSLBEG00000000947	CPSF7	72	40.462	Labrus_bergylta
ENSNBRG00000004089	cpsf6	93	33.648	ENSLACG00000005542	CPSF7	70	45.570	Latimeria_chalumnae
ENSNBRG00000004089	cpsf6	66	89.222	ENSLOCG00000016190	cpsf6	63	90.361	Lepisosteus_oculatus
ENSNBRG00000004089	cpsf6	100	96.364	ENSMAMG00000010385	cpsf6	100	96.364	Mastacembelus_armatus
ENSNBRG00000004089	cpsf6	100	99.636	ENSMZEG00005007975	cpsf6	100	99.636	Maylandia_zebra
ENSNBRG00000004089	cpsf6	95	43.478	ENSMGAG00000004876	CPSF7	62	58.683	Meleagris_gallopavo
ENSNBRG00000004089	cpsf6	65	52.041	ENSMODG00000020364	CPSF7	72	56.818	Monodelphis_domestica
ENSNBRG00000004089	cpsf6	82	96.460	ENSMALG00000014908	cpsf6	89	96.460	Monopterus_albus
ENSNBRG00000004089	cpsf6	68	90.580	ENSMLUG00000028728	-	85	80.000	Myotis_lucifugus
ENSNBRG00000004089	cpsf6	73	78.261	ENSMLUG00000023960	-	73	77.907	Myotis_lucifugus
ENSNBRG00000004089	cpsf6	65	54.404	ENSMEUG00000002261	CPSF7	71	57.803	Notamacropus_eugenii
ENSNBRG00000004089	cpsf6	100	98.548	ENSONIG00000011702	cpsf6	100	98.548	Oreochromis_niloticus
ENSNBRG00000004089	cpsf6	95	42.569	ENSOCUG00000024726	CPSF7	71	57.225	Oryctolagus_cuniculus
ENSNBRG00000004089	cpsf6	68	35.776	ENSORLG00000006495	CPSF7	72	39.429	Oryzias_latipes
ENSNBRG00000004089	cpsf6	68	35.776	ENSORLG00020012657	CPSF7	72	39.429	Oryzias_latipes_hni
ENSNBRG00000004089	cpsf6	68	35.776	ENSORLG00015011091	CPSF7	71	39.766	Oryzias_latipes_hsok
ENSNBRG00000004089	cpsf6	68	37.069	ENSOMEG00000000539	CPSF7	72	40.462	Oryzias_melastigma
ENSNBRG00000004089	cpsf6	95	36.986	ENSOARG00000012937	CPSF7	64	57.225	Ovis_aries
ENSNBRG00000004089	cpsf6	95	38.980	ENSPPRG00000008538	CPSF7	71	57.803	Panthera_pardus
ENSNBRG00000004089	cpsf6	85	82.378	ENSPTIG00000004079	CPSF6	52	84.942	Panthera_tigris_altaica
ENSNBRG00000004089	cpsf6	94	81.644	ENSPANG00000011641	CPSF6	66	83.871	Papio_anubis
ENSNBRG00000004089	cpsf6	64	46.629	ENSPKIG00000018054	CPSF7	65	46.584	Paramormyrops_kingsleyae
ENSNBRG00000004089	cpsf6	50	42.466	ENSPMAG00000008077	-	68	49.198	Petromyzon_marinus
ENSNBRG00000004089	cpsf6	65	52.041	ENSPCIG00000002551	CPSF7	84	53.631	Phascolarctos_cinereus
ENSNBRG00000004089	cpsf6	94	93.064	ENSPLAG00000005715	cpsf6	94	93.064	Poecilia_latipinna
ENSNBRG00000004089	cpsf6	94	93.064	ENSPMEG00000001353	cpsf6	94	93.064	Poecilia_mexicana
ENSNBRG00000004089	cpsf6	94	90.559	ENSPREG00000004417	cpsf6	94	90.559	Poecilia_reticulata
ENSNBRG00000004089	cpsf6	100	93.686	ENSPNYG00000020315	cpsf6	100	93.686	Pundamilia_nyererei
ENSNBRG00000004089	cpsf6	59	47.059	ENSPNAG00000015073	CPSF7	67	46.061	Pygocentrus_nattereri
ENSNBRG00000004089	cpsf6	95	41.636	ENSRNOG00000020668	Cpsf7	73	57.803	Rattus_norvegicus
ENSNBRG00000004089	cpsf6	95	41.636	ENSRBIG00000031429	CPSF7	77	64.122	Rhinopithecus_bieti
ENSNBRG00000004089	cpsf6	85	80.679	ENSSBOG00000010652	CPSF6	52	84.942	Saimiri_boliviensis_boliviensis
ENSNBRG00000004089	cpsf6	62	54.404	ENSSHAG00000011964	CPSF7	68	57.803	Sarcophilus_harrisii
ENSNBRG00000004089	cpsf6	62	43.094	ENSSFOG00015010288	cpsf7	73	41.379	Scleropages_formosus
ENSNBRG00000004089	cpsf6	100	97.636	ENSSDUG00000005024	cpsf6	100	97.636	Seriola_dumerili
ENSNBRG00000004089	cpsf6	100	97.636	ENSSLDG00000009042	cpsf6	100	97.636	Seriola_lalandi_dorsalis
ENSNBRG00000004089	cpsf6	85	87.402	ENSSARG00000006743	CPSF6	75	88.976	Sorex_araneus
ENSNBRG00000004089	cpsf6	65	53.846	ENSSPUG00000019344	CPSF7	73	57.803	Sphenodon_punctatus
ENSNBRG00000004089	cpsf6	100	97.091	ENSSPAG00000013906	cpsf6	100	97.091	Stegastes_partitus
ENSNBRG00000004089	cpsf6	74	60.630	ENSSSCG00000013083	CPSF7	75	64.885	Sus_scrofa
ENSNBRG00000004089	cpsf6	63	50.000	ENSTGUG00000006513	CPSF7	71	54.070	Taeniopygia_guttata
ENSNBRG00000004089	cpsf6	62	53.886	ENSTTRG00000011085	CPSF7	70	57.803	Tursiops_truncatus
ENSNBRG00000004089	cpsf6	85	80.679	ENSUAMG00000023492	CPSF6	52	84.942	Ursus_americanus
ENSNBRG00000004089	cpsf6	85	80.679	ENSUMAG00000020779	CPSF6	52	84.942	Ursus_maritimus
ENSNBRG00000004089	cpsf6	74	60.630	ENSVVUG00000004939	CPSF7	75	64.885	Vulpes_vulpes
ENSNBRG00000004089	cpsf6	97	42.202	ENSXETG00000006715	cpsf7	54	45.763	Xenopus_tropicalis
ENSNBRG00000004089	cpsf6	94	92.678	ENSXCOG00000013423	cpsf6	94	92.678	Xiphophorus_couchianus