EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSNBRG00000004770 (Gene tree)
Gene ID
102792483
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Neolamprologus_brichardi
Status
putative
Strand
Plus strand
Length
10389 bases
Position
chrJH422301.1:1383716-1394104
Accession
102792483
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSNBRP00000006130CPSF73-100_CPF11718.82.5e-5311
ENSNBRP00000006110CPSF73-100_CPF11718.82.7e-5311
ENSNBRP00000006141CPSF73-100_CPF11718.81.4e-5111
ENSNBRP00000006141Beta-CaspPF10996.89.5e-3411
ENSNBRP00000006130Beta-CaspPF10996.81.1e-3311
ENSNBRP00000006110Beta-CaspPF10996.82.9e-3311
ENSNBRP00000006130Lactamase_BPF00753.271.8e-1811
ENSNBRP00000006110Lactamase_BPF00753.271.9e-1811
ENSNBRP00000006141Lactamase_BPF00753.274.4e-0811
ENSNBRP00000006141RMMBLPF07521.121.6e-2111
ENSNBRP00000006130RMMBLPF07521.121.8e-2111
ENSNBRP00000006110RMMBLPF07521.121.9e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSNBRT00000006317-5373XM_006793441ENSNBRP00000006130686 (aa)XP_006793504UPI0003EC69AE
ENSNBRT00000006297-5451-ENSNBRP00000006110712 (aa)--
ENSNBRT00000006328-1881-ENSNBRP00000006141626 (aa)--
Gene Model
Click here to download ENSNBRG00000004770's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000004770's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSNBRG00000004770cpsf36835.849ENSNBRG00000002564ints117735.849
ENSNBRG00000004770cpsf39985.984ENSNBRG00000010525CPSF39986.010
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSNBRG00000004770cpsf39985.169ENSG00000119203CPSF310098.529Homo_sapiens
ENSNBRG00000004770cpsf37496.267ENSAPOG00000012241CPSF39196.267Acanthochromis_polyacanthus
ENSNBRG00000004770cpsf310095.044ENSAPOG00000022087cpsf310095.044Acanthochromis_polyacanthus
ENSNBRG00000004770cpsf39985.316ENSAMEG00000008493CPSF39985.316Ailuropoda_melanoleuca
ENSNBRG00000004770cpsf310094.146ENSACIG00000009846cpsf310094.146Amphilophus_citrinellus
ENSNBRG00000004770cpsf39985.984ENSACIG00000023663CPSF39985.984Amphilophus_citrinellus
ENSNBRG00000004770cpsf39988.372ENSAOCG00000010077CPSF39988.372Amphiprion_ocellaris
ENSNBRG00000004770cpsf310095.335ENSAOCG00000022056cpsf310095.335Amphiprion_ocellaris
ENSNBRG00000004770cpsf310095.190ENSAPEG00000019526cpsf310095.190Amphiprion_percula
ENSNBRG00000004770cpsf39988.372ENSAPEG00000021167CPSF39988.372Amphiprion_percula
ENSNBRG00000004770cpsf39983.576ENSATEG00000014525CPSF39983.576Anabas_testudineus
ENSNBRG00000004770cpsf39994.591ENSATEG00000003959cpsf39994.591Anabas_testudineus
ENSNBRG00000004770cpsf39785.522ENSAPLG00000006941CPSF39885.522Anas_platyrhynchos
ENSNBRG00000004770cpsf39981.300ENSACAG00000001759CPSF39983.123Anolis_carolinensis
ENSNBRG00000004770cpsf39980.323ENSANAG00000031254CPSF39980.931Aotus_nancymaae
ENSNBRG00000004770cpsf310099.201ENSACLG00000014484cpsf310099.201Astatotilapia_calliptera
ENSNBRG00000004770cpsf39985.984ENSACLG00000018846CPSF39986.010Astatotilapia_calliptera
ENSNBRG00000004770cpsf39986.773ENSAMXG00000004786cpsf39986.773Astyanax_mexicanus
ENSNBRG00000004770cpsf39985.316ENSBTAG00000019735CPSF39985.316Bos_taurus
ENSNBRG00000004770cpsf39057.571WBGene00013460cpsf-38957.571Caenorhabditis_elegans
ENSNBRG00000004770cpsf39985.022ENSCJAG00000006276CPSF39985.022Callithrix_jacchus
ENSNBRG00000004770cpsf39985.316ENSCAFG00000003375CPSF39585.316Canis_familiaris
ENSNBRG00000004770cpsf39088.188ENSCAFG00020026799CPSF39988.188Canis_lupus_dingo
ENSNBRG00000004770cpsf39985.316ENSCHIG00000013973CPSF39985.316Capra_hircus
ENSNBRG00000004770cpsf39985.169ENSTSYG00000002967CPSF39985.169Carlito_syrichta
ENSNBRG00000004770cpsf39983.121ENSCAPG00000013851CPSF39985.564Cavia_aperea
ENSNBRG00000004770cpsf39985.463ENSCPOG00000011299CPSF39985.463Cavia_porcellus
ENSNBRG00000004770cpsf39985.022ENSCCAG00000036730CPSF39985.135Cebus_capucinus
ENSNBRG00000004770cpsf39983.260ENSCATG00000014770CPSF39991.019Cercocebus_atys
ENSNBRG00000004770cpsf39985.463ENSCLAG00000002727CPSF39985.463Chinchilla_lanigera
ENSNBRG00000004770cpsf38895.820ENSCSAG00000007125CPSF39995.820Chlorocebus_sabaeus
ENSNBRG00000004770cpsf386100.000ENSCHOG00000000180CPSF38560.915Choloepus_hoffmanni
ENSNBRG00000004770cpsf39985.486ENSCPBG00000014074CPSF39985.486Chrysemys_picta_bellii
ENSNBRG00000004770cpsf39967.089ENSCING00000007214-9767.889Ciona_intestinalis
ENSNBRG00000004770cpsf39975.219ENSCANG00000034435CPSF39975.219Colobus_angolensis_palliatus
ENSNBRG00000004770cpsf39984.875ENSCGRG00001013134Cpsf39984.875Cricetulus_griseus_chok1gshd
ENSNBRG00000004770cpsf39984.875ENSCGRG00000018319Cpsf39984.875Cricetulus_griseus_crigri
ENSNBRG00000004770cpsf39986.357ENSCSEG00000002021CPSF39986.667Cynoglossus_semilaevis
ENSNBRG00000004770cpsf39987.645ENSCVAG00000015067CPSF39987.645Cyprinodon_variegatus
ENSNBRG00000004770cpsf310086.377ENSDARG00000027649cpsf310086.377Danio_rerio
ENSNBRG00000004770cpsf39984.311ENSDNOG00000008940CPSF39584.311Dasypus_novemcinctus
ENSNBRG00000004770cpsf39586.923ENSDORG00000014263Cpsf39986.923Dipodomys_ordii
ENSNBRG00000004770cpsf39967.841FBgn0261065Cpsf739967.841Drosophila_melanogaster
ENSNBRG00000004770cpsf39574.308ENSETEG00000003893CPSF39974.308Echinops_telfairi
ENSNBRG00000004770cpsf39976.130ENSEBUG00000009018cpsf39976.130Eptatretus_burgeri
ENSNBRG00000004770cpsf39985.316ENSEASG00005003970CPSF39985.316Equus_asinus_asinus
ENSNBRG00000004770cpsf39985.316ENSECAG00000019911CPSF39690.572Equus_caballus
ENSNBRG00000004770cpsf39970.631ENSEEUG00000015422CPSF39970.631Erinaceus_europaeus
ENSNBRG00000004770cpsf39990.131ENSELUG00000013775cpsf39990.131Esox_lucius
ENSNBRG00000004770cpsf39985.316ENSFCAG00000007852CPSF39985.316Felis_catus
ENSNBRG00000004770cpsf39982.857ENSFALG00000006572CPSF310085.008Ficedula_albicollis
ENSNBRG00000004770cpsf39985.169ENSFDAG00000006317CPSF39985.169Fukomys_damarensis
ENSNBRG00000004770cpsf36366.585ENSFHEG00000012186CPSF39894.595Fundulus_heteroclitus
ENSNBRG00000004770cpsf310092.711ENSFHEG00000014774cpsf310092.711Fundulus_heteroclitus
ENSNBRG00000004770cpsf310090.421ENSGMOG00000003157cpsf310090.421Gadus_morhua
ENSNBRG00000004770cpsf39985.196ENSGALG00000016424CPSF39985.196Gallus_gallus
ENSNBRG00000004770cpsf310088.116ENSGAFG00000008016CPSF310088.116Gambusia_affinis
ENSNBRG00000004770cpsf310092.687ENSGAFG00000019449cpsf310092.687Gambusia_affinis
ENSNBRG00000004770cpsf37380.514ENSGAGG00000025583CPSF39380.942Gopherus_agassizii
ENSNBRG00000004770cpsf39983.046ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSNBRG00000004770cpsf310099.271ENSHBUG00000001188cpsf310099.271Haplochromis_burtoni
ENSNBRG00000004770cpsf36378.856ENSHBUG00000014332CPSF310079.259Haplochromis_burtoni
ENSNBRG00000004770cpsf39985.022ENSHGLG00000000666CPSF39985.022Heterocephalus_glaber_female
ENSNBRG00000004770cpsf39985.022ENSHGLG00100007765CPSF39985.022Heterocephalus_glaber_male
ENSNBRG00000004770cpsf39986.628ENSHCOG00000015957CPSF39986.628Hippocampus_comes
ENSNBRG00000004770cpsf39991.813ENSHCOG00000007251cpsf39991.813Hippocampus_comes
ENSNBRG00000004770cpsf39987.064ENSIPUG00000023488cpsf39987.064Ictalurus_punctatus
ENSNBRG00000004770cpsf39984.875ENSSTOG00000004476CPSF39984.875Ictidomys_tridecemlineatus
ENSNBRG00000004770cpsf39984.773ENSJJAG00000023415Cpsf39984.773Jaculus_jaculus
ENSNBRG00000004770cpsf310093.878ENSKMAG00000002806cpsf310093.878Kryptolebias_marmoratus
ENSNBRG00000004770cpsf39987.355ENSKMAG00000007317CPSF39987.355Kryptolebias_marmoratus
ENSNBRG00000004770cpsf39985.526ENSLBEG00000020569cpsf39685.526Labrus_bergylta
ENSNBRG00000004770cpsf39688.333ENSLBEG00000013492CPSF39988.333Labrus_bergylta
ENSNBRG00000004770cpsf35989.674ENSLBEG00000015018-9989.674Labrus_bergylta
ENSNBRG00000004770cpsf39980.145ENSLACG00000008308CPSF39980.145Latimeria_chalumnae
ENSNBRG00000004770cpsf310086.580ENSLOCG00000016823cpsf310086.580Lepisosteus_oculatus
ENSNBRG00000004770cpsf39884.366ENSLAFG00000009467CPSF39984.366Loxodonta_africana
ENSNBRG00000004770cpsf39985.022ENSMFAG00000001339CPSF39891.036Macaca_fascicularis
ENSNBRG00000004770cpsf39982.643ENSMMUG00000018038CPSF39293.568Macaca_mulatta
ENSNBRG00000004770cpsf39096.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSNBRG00000004770cpsf39985.169ENSMLEG00000026825CPSF39396.154Mandrillus_leucophaeus
ENSNBRG00000004770cpsf39986.349ENSMAMG00000008835CPSF39986.349Mastacembelus_armatus
ENSNBRG00000004770cpsf310093.149ENSMAMG00000003076cpsf310093.149Mastacembelus_armatus
ENSNBRG00000004770cpsf310099.271ENSMZEG00005014358cpsf310099.271Maylandia_zebra
ENSNBRG00000004770cpsf39987.645ENSMZEG00005006258CPSF39987.645Maylandia_zebra
ENSNBRG00000004770cpsf39785.307ENSMGAG00000013995CPSF310085.307Meleagris_gallopavo
ENSNBRG00000004770cpsf35874.599ENSMAUG00000000166Cpsf39975.269Mesocricetus_auratus
ENSNBRG00000004770cpsf39980.673ENSMICG00000002363CPSF39980.673Microcebus_murinus
ENSNBRG00000004770cpsf39981.938ENSMOCG00000020067Cpsf39981.938Microtus_ochrogaster
ENSNBRG00000004770cpsf39885.505ENSMMOG00000018212CPSF39886.427Mola_mola
ENSNBRG00000004770cpsf37877.660ENSMMOG00000011923CPSF38577.660Mola_mola
ENSNBRG00000004770cpsf39983.576ENSMODG00000014703CPSF39983.576Monodelphis_domestica
ENSNBRG00000004770cpsf310094.461ENSMALG00000016416cpsf310094.461Monopterus_albus
ENSNBRG00000004770cpsf39684.375ENSMALG00000011474CPSF39983.780Monopterus_albus
ENSNBRG00000004770cpsf39985.169MGP_CAROLIEiJ_G0017640Cpsf39985.169Mus_caroli
ENSNBRG00000004770cpsf39985.169ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSNBRG00000004770cpsf39985.022MGP_PahariEiJ_G0029397Cpsf39985.022Mus_pahari
ENSNBRG00000004770cpsf39985.169MGP_SPRETEiJ_G0018481Cpsf39985.169Mus_spretus
ENSNBRG00000004770cpsf39985.484ENSMPUG00000013213CPSF39985.484Mustela_putorius_furo
ENSNBRG00000004770cpsf39985.191ENSMLUG00000010636CPSF39985.191Myotis_lucifugus
ENSNBRG00000004770cpsf39984.875ENSNGAG00000019836Cpsf39984.875Nannospalax_galili
ENSNBRG00000004770cpsf39985.022ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSNBRG00000004770cpsf39954.772ENSMEUG00000013117-9164.683Notamacropus_eugenii
ENSNBRG00000004770cpsf38795.635ENSOPRG00000008902CPSF39195.635Ochotona_princeps
ENSNBRG00000004770cpsf39985.609ENSODEG00000003129CPSF39985.609Octodon_degus
ENSNBRG00000004770cpsf310098.542ENSONIG00000018812cpsf310098.542Oreochromis_niloticus
ENSNBRG00000004770cpsf38882.562ENSOANG00000008577CPSF39982.918Ornithorhynchus_anatinus
ENSNBRG00000004770cpsf39985.316ENSOCUG00000003728CPSF39985.316Oryctolagus_cuniculus
ENSNBRG00000004770cpsf310091.983ENSORLG00000018854cpsf310091.983Oryzias_latipes
ENSNBRG00000004770cpsf310092.128ENSORLG00020013331cpsf310092.128Oryzias_latipes_hni
ENSNBRG00000004770cpsf310091.983ENSORLG00015011017cpsf310091.983Oryzias_latipes_hsok
ENSNBRG00000004770cpsf310091.983ENSOMEG00000010647cpsf39691.983Oryzias_melastigma
ENSNBRG00000004770cpsf39975.330ENSOGAG00000001680CPSF39975.330Otolemur_garnettii
ENSNBRG00000004770cpsf39985.316ENSOARG00000015073CPSF39985.316Ovis_aries
ENSNBRG00000004770cpsf39985.169ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSNBRG00000004770cpsf39985.316ENSPPRG00000016790CPSF39985.463Panthera_pardus
ENSNBRG00000004770cpsf39885.693ENSPTIG00000003920CPSF39985.841Panthera_tigris_altaica
ENSNBRG00000004770cpsf39985.169ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSNBRG00000004770cpsf39985.169ENSPANG00000016798CPSF39593.568Papio_anubis
ENSNBRG00000004770cpsf310087.681ENSPKIG00000023646cpsf310087.681Paramormyrops_kingsleyae
ENSNBRG00000004770cpsf39984.751ENSPSIG00000016144CPSF39984.751Pelodiscus_sinensis
ENSNBRG00000004770cpsf36380.050ENSPMGG00000015311CPSF310080.050Periophthalmus_magnuspinnatus
ENSNBRG00000004770cpsf310086.901ENSPMGG00000006141-10086.901Periophthalmus_magnuspinnatus
ENSNBRG00000004770cpsf39984.875ENSPEMG00000017668Cpsf39985.022Peromyscus_maniculatus_bairdii
ENSNBRG00000004770cpsf37989.503ENSPMAG00000004841cpsf39989.503Petromyzon_marinus
ENSNBRG00000004770cpsf39982.166ENSPCIG00000009823CPSF39885.583Phascolarctos_cinereus
ENSNBRG00000004770cpsf310093.440ENSPFOG00000015922cpsf310093.440Poecilia_formosa
ENSNBRG00000004770cpsf310087.681ENSPFOG00000010418-10087.681Poecilia_formosa
ENSNBRG00000004770cpsf36380.494ENSPLAG00000021300-10081.235Poecilia_latipinna
ENSNBRG00000004770cpsf310093.440ENSPLAG00000000882cpsf310093.440Poecilia_latipinna
ENSNBRG00000004770cpsf310093.440ENSPMEG00000018309cpsf310093.440Poecilia_mexicana
ENSNBRG00000004770cpsf310092.982ENSPREG00000014875cpsf310092.982Poecilia_reticulata
ENSNBRG00000004770cpsf310082.029ENSPREG00000004482CPSF310082.029Poecilia_reticulata
ENSNBRG00000004770cpsf39980.910ENSPPYG00000012666CPSF39980.910Pongo_abelii
ENSNBRG00000004770cpsf38564.850ENSPCAG00000015042CPSF39064.850Procavia_capensis
ENSNBRG00000004770cpsf38885.567ENSPCOG00000023016CPSF39985.567Propithecus_coquereli
ENSNBRG00000004770cpsf39985.191ENSPVAG00000005324CPSF39985.191Pteropus_vampyrus
ENSNBRG00000004770cpsf38891.423ENSPNYG00000021047CPSF39191.423Pundamilia_nyererei
ENSNBRG00000004770cpsf310099.271ENSPNYG00000004405cpsf310099.271Pundamilia_nyererei
ENSNBRG00000004770cpsf39987.645ENSPNAG00000023060cpsf39987.645Pygocentrus_nattereri
ENSNBRG00000004770cpsf39985.169ENSRNOG00000052418Cpsf39985.169Rattus_norvegicus
ENSNBRG00000004770cpsf39980.176ENSRBIG00000041615CPSF39981.240Rhinopithecus_bieti
ENSNBRG00000004770cpsf39985.169ENSRROG00000033792CPSF39985.169Rhinopithecus_roxellana
ENSNBRG00000004770cpsf38840.993YLR277CYSH19040.993Saccharomyces_cerevisiae
ENSNBRG00000004770cpsf39978.797ENSSBOG00000027263CPSF39781.465Saimiri_boliviensis_boliviensis
ENSNBRG00000004770cpsf39984.875ENSSHAG00000007024CPSF39984.875Sarcophilus_harrisii
ENSNBRG00000004770cpsf310087.536ENSSFOG00015002108cpsf310087.536Scleropages_formosus
ENSNBRG00000004770cpsf39687.538ENSSMAG00000020534CPSF39787.538Scophthalmus_maximus
ENSNBRG00000004770cpsf310094.023ENSSDUG00000002828cpsf39794.023Seriola_dumerili
ENSNBRG00000004770cpsf39987.500ENSSDUG00000018498CPSF39987.500Seriola_dumerili
ENSNBRG00000004770cpsf39987.500ENSSLDG00000005234CPSF39987.500Seriola_lalandi_dorsalis
ENSNBRG00000004770cpsf310093.732ENSSLDG00000008469cpsf39793.732Seriola_lalandi_dorsalis
ENSNBRG00000004770cpsf39082.927ENSSARG00000005186CPSF39082.927Sorex_araneus
ENSNBRG00000004770cpsf39982.278ENSSPUG00000015525CPSF39784.604Sphenodon_punctatus
ENSNBRG00000004770cpsf310094.752ENSSPAG00000018579cpsf310094.752Stegastes_partitus
ENSNBRG00000004770cpsf39987.791ENSSPAG00000002906CPSF39987.791Stegastes_partitus
ENSNBRG00000004770cpsf39985.316ENSSSCG00000020799CPSF39985.316Sus_scrofa
ENSNBRG00000004770cpsf39985.234ENSTGUG00000013016CPSF310085.234Taeniopygia_guttata
ENSNBRG00000004770cpsf39991.679ENSTRUG00000007030cpsf39891.679Takifugu_rubripes
ENSNBRG00000004770cpsf36372.682ENSTRUG00000013905CPSF39972.682Takifugu_rubripes
ENSNBRG00000004770cpsf38490.110ENSTBEG00000002707CPSF38490.110Tupaia_belangeri
ENSNBRG00000004770cpsf38673.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSNBRG00000004770cpsf39686.454ENSUAMG00000007535CPSF39486.454Ursus_americanus
ENSNBRG00000004770cpsf39982.962ENSUMAG00000003676CPSF39490.502Ursus_maritimus
ENSNBRG00000004770cpsf39285.962ENSVPAG00000008041CPSF310085.962Vicugna_pacos
ENSNBRG00000004770cpsf39985.316ENSVVUG00000002194CPSF39985.316Vulpes_vulpes
ENSNBRG00000004770cpsf39984.783ENSXETG00000008263cpsf39984.783Xenopus_tropicalis
ENSNBRG00000004770cpsf310093.003ENSXCOG00000019695cpsf310093.003Xiphophorus_couchianus
ENSNBRG00000004770cpsf35878.763ENSXCOG00000000957-8779.839Xiphophorus_couchianus
ENSNBRG00000004770cpsf310093.294ENSXMAG00000009784cpsf310093.294Xiphophorus_maculatus
ENSNBRG00000004770cpsf310087.971ENSXMAG00000027291CPSF310087.971Xiphophorus_maculatus

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