EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000004912 (Gene tree)
Gene ID: 102786949
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoproteins C1/C2-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 8904 bases
Position: chrJH422505.1:145132-154035
Accession: 102786949
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000006407	RRM_1	PF00076.22	2.9e-13	1	1
ENSNBRP00000006572	RRM_1	PF00076.22	3.3e-13	1	1
ENSNBRP00000006518	RRM_1	PF00076.22	4.4e-13	1	1
ENSNBRP00000006586	RRM_1	PF00076.22	4.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000006767	-	846	-	ENSNBRP00000006572	281 (aa)	-	-
ENSNBRT00000006601	-	708	-	ENSNBRP00000006407	235 (aa)	-	-
ENSNBRT00000006783	-	969	-	ENSNBRP00000006586	322 (aa)	-	-
ENSNBRT00000006711	-	906	XM_006808522	ENSNBRP00000006518	301 (aa)	XP_006808585	-

Gene Model

Click here to download ENSNBRG00000004912's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000004912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000004912	-	91	46.729	ENSNBRG00000014761	raly	66	50.000
ENSNBRG00000004912	-	91	56.075	ENSNBRG00000011206	-	73	57.674
ENSNBRG00000004912	-	99	76.230	ENSNBRG00000015676	-	95	75.912
ENSNBRG00000004912	-	93	55.274	ENSNBRG00000011376	-	74	58.850

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000004912	-	94	53.648	ENSG00000184672	RALYL	93	78.481	Homo_sapiens
ENSNBRG00000004912	-	97	91.126	ENSAPOG00000006963	hnrnpc	97	89.933	Acanthochromis_polyacanthus
ENSNBRG00000004912	-	94	80.263	ENSACIG00000016568	-	92	78.884	Amphilophus_citrinellus
ENSNBRG00000004912	-	99	96.321	ENSACIG00000000270	-	100	96.321	Amphilophus_citrinellus
ENSNBRG00000004912	-	95	79.741	ENSAOCG00000021616	-	80	83.333	Amphiprion_ocellaris
ENSNBRG00000004912	-	97	90.785	ENSAOCG00000003896	-	97	89.597	Amphiprion_ocellaris
ENSNBRG00000004912	-	95	79.741	ENSAPEG00000019962	-	82	83.721	Amphiprion_percula
ENSNBRG00000004912	-	97	90.785	ENSAPEG00000001489	-	97	89.597	Amphiprion_percula
ENSNBRG00000004912	-	94	81.579	ENSATEG00000018006	-	78	88.679	Anabas_testudineus
ENSNBRG00000004912	-	99	92.282	ENSATEG00000011734	-	100	89.597	Anabas_testudineus
ENSNBRG00000004912	-	94	53.419	ENSAPLG00000015574	RALYL	79	55.365	Anas_platyrhynchos
ENSNBRG00000004912	-	94	52.564	ENSACAG00000028464	RALYL	78	55.794	Anolis_carolinensis
ENSNBRG00000004912	-	94	53.219	ENSANAG00000023383	RALYL	73	59.624	Aotus_nancymaae
ENSNBRG00000004912	-	99	97.987	ENSACLG00000013636	-	93	94.915	Astatotilapia_calliptera
ENSNBRG00000004912	-	94	79.913	ENSACLG00000005707	-	87	81.923	Astatotilapia_calliptera
ENSNBRG00000004912	-	99	98.322	ENSACLG00000000995	-	100	97.786	Astatotilapia_calliptera
ENSNBRG00000004912	-	93	80.717	ENSAMXG00000034915	zgc:55733	87	77.953	Astyanax_mexicanus
ENSNBRG00000004912	-	87	72.727	ENSAMXG00000042946	hnrnpc	99	78.974	Astyanax_mexicanus
ENSNBRG00000004912	-	94	53.448	ENSCJAG00000000402	RALYL	75	58.986	Callithrix_jacchus
ENSNBRG00000004912	-	94	54.077	ENSCPOG00000012314	RALYL	78	56.838	Cavia_porcellus
ENSNBRG00000004912	-	94	53.219	ENSCCAG00000025003	RALYL	77	78.481	Cebus_capucinus
ENSNBRG00000004912	-	94	53.648	ENSCATG00000042145	RALYL	73	59.624	Cercocebus_atys
ENSNBRG00000004912	-	94	54.077	ENSCLAG00000005228	RALYL	78	56.838	Chinchilla_lanigera
ENSNBRG00000004912	-	91	53.540	ENSCHOG00000013228	RALYL	75	54.867	Choloepus_hoffmanni
ENSNBRG00000004912	-	94	53.648	ENSCANG00000039144	RALYL	73	59.624	Colobus_angolensis_palliatus
ENSNBRG00000004912	-	94	53.846	ENSCGRG00001009241	Ralyl	78	56.410	Cricetulus_griseus_chok1gshd
ENSNBRG00000004912	-	99	76.033	ENSCSEG00000021349	-	80	79.070	Cynoglossus_semilaevis
ENSNBRG00000004912	-	94	71.491	ENSCSEG00000019769	-	72	81.132	Cynoglossus_semilaevis
ENSNBRG00000004912	-	90	75.547	ENSCVAG00000002797	-	92	75.547	Cyprinodon_variegatus
ENSNBRG00000004912	-	92	81.696	ENSCVAG00000016981	-	79	81.467	Cyprinodon_variegatus
ENSNBRG00000004912	-	93	82.511	ENSDARG00000103845	zgc:55733	91	81.102	Danio_rerio
ENSNBRG00000004912	-	95	76.190	ENSDARG00000053810	hnrnpc	80	78.906	Danio_rerio
ENSNBRG00000004912	-	94	54.274	ENSDORG00000003721	Ralyl	78	57.265	Dipodomys_ordii
ENSNBRG00000004912	-	74	58.046	ENSETEG00000014028	RALYL	83	62.195	Echinops_telfairi
ENSNBRG00000004912	-	92	42.979	ENSEBUG00000012363	hnrnpc	65	46.154	Eptatretus_burgeri
ENSNBRG00000004912	-	90	49.083	ENSEBUG00000006049	RALYL	74	48.815	Eptatretus_burgeri
ENSNBRG00000004912	-	94	54.274	ENSEEUG00000007202	RALYL	79	57.082	Erinaceus_europaeus
ENSNBRG00000004912	-	94	79.476	ENSELUG00000004132	-	88	78.707	Esox_lucius
ENSNBRG00000004912	-	94	82.432	ENSELUG00000007714	-	89	82.576	Esox_lucius
ENSNBRG00000004912	-	92	53.478	ENSFALG00000008647	RALYL	96	58.879	Ficedula_albicollis
ENSNBRG00000004912	-	93	76.446	ENSFHEG00000007278	-	94	69.256	Fundulus_heteroclitus
ENSNBRG00000004912	-	89	86.989	ENSFHEG00000003605	-	90	87.179	Fundulus_heteroclitus
ENSNBRG00000004912	-	50	88.608	ENSGMOG00000013154	-	56	89.610	Gadus_morhua
ENSNBRG00000004912	-	51	85.185	ENSGMOG00000010344	-	55	88.312	Gadus_morhua
ENSNBRG00000004912	-	94	53.419	ENSGALG00000036938	RALYL	77	55.365	Gallus_gallus
ENSNBRG00000004912	-	94	79.386	ENSGAFG00000020992	-	82	80.934	Gambusia_affinis
ENSNBRG00000004912	-	89	86.989	ENSGAFG00000020486	-	95	84.899	Gambusia_affinis
ENSNBRG00000004912	-	99	76.955	ENSGACG00000017772	-	97	79.921	Gasterosteus_aculeatus
ENSNBRG00000004912	-	95	67.220	ENSGACG00000018932	-	93	67.083	Gasterosteus_aculeatus
ENSNBRG00000004912	-	94	53.648	ENSGGOG00000000841	RALYL	73	59.624	Gorilla_gorilla
ENSNBRG00000004912	-	94	80.349	ENSHBUG00000010527	-	81	82.308	Haplochromis_burtoni
ENSNBRG00000004912	-	99	98.658	ENSHBUG00000018342	-	97	98.658	Haplochromis_burtoni
ENSNBRG00000004912	-	94	53.648	ENSHGLG00000004866	RALYL	78	56.410	Heterocephalus_glaber_female
ENSNBRG00000004912	-	94	53.648	ENSHGLG00100017480	RALYL	78	56.410	Heterocephalus_glaber_male
ENSNBRG00000004912	-	93	75.210	ENSHCOG00000012333	hnrnpc	88	75.556	Hippocampus_comes
ENSNBRG00000004912	-	93	81.333	ENSIPUG00000011271	hnrnpc	98	84.444	Ictalurus_punctatus
ENSNBRG00000004912	-	95	79.825	ENSIPUG00000008666	zgc:55733	93	84.259	Ictalurus_punctatus
ENSNBRG00000004912	-	94	53.846	ENSSTOG00000012583	RALYL	79	56.838	Ictidomys_tridecemlineatus
ENSNBRG00000004912	-	91	79.464	ENSKMAG00000018265	-	80	80.309	Kryptolebias_marmoratus
ENSNBRG00000004912	-	90	91.111	ENSKMAG00000011170	-	89	90.074	Kryptolebias_marmoratus
ENSNBRG00000004912	-	90	81.206	ENSLBEG00000024418	-	100	79.479	Labrus_bergylta
ENSNBRG00000004912	-	89	85.926	ENSLBEG00000006979	-	99	82.550	Labrus_bergylta
ENSNBRG00000004912	-	93	80.176	ENSLBEG00000006193	-	81	80.233	Labrus_bergylta
ENSNBRG00000004912	-	91	72.273	ENSLOCG00000002560	hnrnpc	89	70.881	Lepisosteus_oculatus
ENSNBRG00000004912	-	94	53.648	ENSMNEG00000033288	RALYL	73	59.624	Macaca_nemestrina
ENSNBRG00000004912	-	94	53.648	ENSMLEG00000038284	RALYL	73	59.624	Mandrillus_leucophaeus
ENSNBRG00000004912	-	97	91.126	ENSMAMG00000012236	-	100	87.542	Mastacembelus_armatus
ENSNBRG00000004912	-	93	82.301	ENSMAMG00000008033	-	89	82.239	Mastacembelus_armatus
ENSNBRG00000004912	-	99	98.322	ENSMZEG00005020460	-	97	98.322	Maylandia_zebra
ENSNBRG00000004912	-	94	79.913	ENSMZEG00005024249	-	81	82.745	Maylandia_zebra
ENSNBRG00000004912	-	94	53.846	ENSMAUG00000015149	Ralyl	78	56.410	Mesocricetus_auratus
ENSNBRG00000004912	-	94	54.506	ENSMICG00000005558	RALYL	80	78.481	Microcebus_murinus
ENSNBRG00000004912	-	94	53.846	ENSMOCG00000017371	Ralyl	78	56.410	Microtus_ochrogaster
ENSNBRG00000004912	-	93	79.204	ENSMMOG00000019520	-	81	87.560	Mola_mola
ENSNBRG00000004912	-	86	92.636	ENSMMOG00000021465	-	91	92.636	Mola_mola
ENSNBRG00000004912	-	93	81.778	ENSMALG00000014623	-	81	83.268	Monopterus_albus
ENSNBRG00000004912	-	91	78.733	ENSMALG00000007520	-	91	80.882	Monopterus_albus
ENSNBRG00000004912	-	94	53.419	ENSMUSG00000039717	Ralyl	93	77.215	Mus_musculus
ENSNBRG00000004912	-	94	55.745	ENSMPUG00000010724	RALYL	78	55.983	Mustela_putorius_furo
ENSNBRG00000004912	-	94	53.846	ENSNGAG00000013375	Ralyl	78	56.410	Nannospalax_galili
ENSNBRG00000004912	-	94	53.219	ENSNLEG00000002702	RALYL	70	59.624	Nomascus_leucogenys
ENSNBRG00000004912	-	77	51.295	ENSOPRG00000013650	-	98	50.777	Ochotona_princeps
ENSNBRG00000004912	-	94	53.648	ENSODEG00000001012	RALYL	78	55.983	Octodon_degus
ENSNBRG00000004912	-	94	80.349	ENSONIG00000018350	-	81	82.308	Oreochromis_niloticus
ENSNBRG00000004912	-	99	97.360	ENSONIG00000007859	-	100	94.921	Oreochromis_niloticus
ENSNBRG00000004912	-	92	77.922	ENSORLG00000003144	-	80	80.827	Oryzias_latipes
ENSNBRG00000004912	-	97	76.610	ENSORLG00000009999	-	97	77.667	Oryzias_latipes
ENSNBRG00000004912	-	97	76.271	ENSORLG00020018228	hnrnpc	97	77.333	Oryzias_latipes_hni
ENSNBRG00000004912	-	97	76.610	ENSORLG00015019755	-	97	77.667	Oryzias_latipes_hsok
ENSNBRG00000004912	-	92	77.922	ENSORLG00015009460	-	79	80.827	Oryzias_latipes_hsok
ENSNBRG00000004912	-	92	81.696	ENSOMEG00000022665	-	80	83.398	Oryzias_melastigma
ENSNBRG00000004912	-	91	74.775	ENSOMEG00000020488	-	95	77.592	Oryzias_melastigma
ENSNBRG00000004912	-	94	53.648	ENSPPAG00000038705	RALYL	73	59.624	Pan_paniscus
ENSNBRG00000004912	-	94	56.596	ENSPPRG00000018612	RALYL	74	58.559	Panthera_pardus
ENSNBRG00000004912	-	94	56.596	ENSPTIG00000020331	RALYL	74	58.559	Panthera_tigris_altaica
ENSNBRG00000004912	-	94	53.648	ENSPTRG00000020381	RALYL	73	59.624	Pan_troglodytes
ENSNBRG00000004912	-	94	53.648	ENSPANG00000029305	RALYL	73	59.624	Papio_anubis
ENSNBRG00000004912	-	94	81.385	ENSPKIG00000022837	-	88	81.362	Paramormyrops_kingsleyae
ENSNBRG00000004912	-	95	79.060	ENSPKIG00000008592	-	88	81.495	Paramormyrops_kingsleyae
ENSNBRG00000004912	-	94	53.419	ENSPSIG00000011135	RALYL	77	55.983	Pelodiscus_sinensis
ENSNBRG00000004912	-	95	71.053	ENSPMGG00000017774	-	94	66.376	Periophthalmus_magnuspinnatus
ENSNBRG00000004912	-	94	81.858	ENSPMGG00000013144	-	84	82.301	Periophthalmus_magnuspinnatus
ENSNBRG00000004912	-	94	53.846	ENSPEMG00000016447	Ralyl	78	56.410	Peromyscus_maniculatus_bairdii
ENSNBRG00000004912	-	91	53.275	ENSPMAG00000002407	RALYL	96	53.304	Petromyzon_marinus
ENSNBRG00000004912	-	89	89.259	ENSPFOG00000001583	-	89	89.416	Poecilia_formosa
ENSNBRG00000004912	-	92	79.018	ENSPFOG00000002643	-	81	80.153	Poecilia_formosa
ENSNBRG00000004912	-	89	88.104	ENSPLAG00000015305	-	95	84.564	Poecilia_latipinna
ENSNBRG00000004912	-	92	79.018	ENSPLAG00000000061	-	79	81.395	Poecilia_latipinna
ENSNBRG00000004912	-	92	78.571	ENSPMEG00000016524	-	79	81.008	Poecilia_mexicana
ENSNBRG00000004912	-	97	85.374	ENSPMEG00000004802	-	95	85.570	Poecilia_mexicana
ENSNBRG00000004912	-	89	88.848	ENSPREG00000007928	-	89	89.011	Poecilia_reticulata
ENSNBRG00000004912	-	91	78.829	ENSPREG00000001852	-	86	81.008	Poecilia_reticulata
ENSNBRG00000004912	-	94	45.946	ENSPPYG00000018710	-	58	79.121	Pongo_abelii
ENSNBRG00000004912	-	94	53.219	ENSPVAG00000010821	RALYL	79	52.766	Pteropus_vampyrus
ENSNBRG00000004912	-	94	80.349	ENSPNYG00000003747	-	87	82.308	Pundamilia_nyererei
ENSNBRG00000004912	-	93	98.165	ENSPNYG00000020293	-	97	96.358	Pundamilia_nyererei
ENSNBRG00000004912	-	95	75.210	ENSPNAG00000019200	zgc:55733	81	79.297	Pygocentrus_nattereri
ENSNBRG00000004912	-	93	80.000	ENSPNAG00000015686	hnrnpc	86	82.031	Pygocentrus_nattereri
ENSNBRG00000004912	-	94	53.648	ENSRROG00000023925	RALYL	82	76.543	Rhinopithecus_roxellana
ENSNBRG00000004912	-	93	81.385	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSNBRG00000004912	-	99	72.653	ENSSFOG00015012015	-	85	83.556	Scleropages_formosus
ENSNBRG00000004912	-	97	84.899	ENSSMAG00000013592	-	96	82.119	Scophthalmus_maximus
ENSNBRG00000004912	-	94	78.166	ENSSMAG00000011147	-	79	86.111	Scophthalmus_maximus
ENSNBRG00000004912	-	97	91.468	ENSSDUG00000001723	-	97	90.940	Seriola_dumerili
ENSNBRG00000004912	-	94	81.416	ENSSDUG00000006730	-	81	81.783	Seriola_dumerili
ENSNBRG00000004912	-	87	92.776	ENSSLDG00000007454	-	84	92.157	Seriola_lalandi_dorsalis
ENSNBRG00000004912	-	94	81.416	ENSSLDG00000007474	-	89	81.783	Seriola_lalandi_dorsalis
ENSNBRG00000004912	-	57	78.495	ENSSARG00000002374	RALYL	79	45.575	Sorex_araneus
ENSNBRG00000004912	-	94	80.702	ENSSPAG00000013996	-	81	82.558	Stegastes_partitus
ENSNBRG00000004912	-	88	94.340	ENSSPAG00000023204	-	97	91.275	Stegastes_partitus
ENSNBRG00000004912	-	91	54.867	ENSTGUG00000011689	RALYL	76	56.889	Taeniopygia_guttata
ENSNBRG00000004912	-	94	82.895	ENSTRUG00000020158	-	85	84.825	Takifugu_rubripes
ENSNBRG00000004912	-	99	72.458	ENSTNIG00000000334	-	94	74.809	Tetraodon_nigroviridis
ENSNBRG00000004912	-	84	83.077	ENSTNIG00000007427	-	84	80.695	Tetraodon_nigroviridis
ENSNBRG00000004912	-	94	47.639	ENSTBEG00000005551	RALYL	90	48.927	Tupaia_belangeri
ENSNBRG00000004912	-	94	51.502	ENSTTRG00000015762	RALYL	74	55.804	Tursiops_truncatus
ENSNBRG00000004912	-	94	49.785	ENSVPAG00000008501	RALYL	77	52.790	Vicugna_pacos
ENSNBRG00000004912	-	70	88.485	ENSXCOG00000019434	-	93	73.451	Xiphophorus_couchianus
ENSNBRG00000004912	-	88	81.509	ENSXCOG00000006552	-	82	81.349	Xiphophorus_couchianus
ENSNBRG00000004912	-	89	86.989	ENSXMAG00000009333	-	89	87.179	Xiphophorus_maculatus
ENSNBRG00000004912	-	92	78.125	ENSXMAG00000022849	-	83	80.620	Xiphophorus_maculatus