EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000005344 (Gene tree)
Gene ID: 102787564
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 14944 bases
Position: chrJH422293.1:5592082-5607025
Accession: 102787564
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000006882	RRM_1	PF00076.22	0.00017	1	1
ENSNBRP00000006852	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000007050	-	5150	XM_006791563	ENSNBRP00000006852	1670 (aa)	XP_006791626	-
ENSNBRT00000007081	-	4974	XM_006791561	ENSNBRP00000006882	1657 (aa)	XP_006791624	-

Gene Model

Click here to download ENSNBRG00000005344's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000005344's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000005344	tnrc6c1	94	52.952	ENSNBRG00000000452	tnrc6c2	100	52.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000005344	tnrc6c1	98	54.025	ENSG00000078687	TNRC6C	92	53.082	Homo_sapiens
ENSNBRG00000005344	tnrc6c1	100	87.089	ENSAPOG00000019749	tnrc6c1	100	86.913	Acanthochromis_polyacanthus
ENSNBRG00000005344	tnrc6c1	98	52.706	ENSAMEG00000013756	TNRC6C	99	48.419	Ailuropoda_melanoleuca
ENSNBRG00000005344	tnrc6c1	100	89.382	ENSACIG00000008075	tnrc6c1	99	89.562	Amphilophus_citrinellus
ENSNBRG00000005344	tnrc6c1	100	86.921	ENSAOCG00000023968	tnrc6c1	100	86.804	Amphiprion_ocellaris
ENSNBRG00000005344	tnrc6c1	100	86.979	ENSAPEG00000009020	tnrc6c1	100	86.862	Amphiprion_percula
ENSNBRG00000005344	tnrc6c1	99	54.206	ENSAPLG00000005456	TNRC6C	94	48.787	Anas_platyrhynchos
ENSNBRG00000005344	tnrc6c1	99	50.106	ENSACAG00000016198	TNRC6C	92	49.145	Anolis_carolinensis
ENSNBRG00000005344	tnrc6c1	99	48.808	ENSANAG00000021554	TNRC6C	91	53.461	Aotus_nancymaae
ENSNBRG00000005344	tnrc6c1	100	97.020	ENSACLG00000000424	tnrc6c1	100	97.020	Astatotilapia_calliptera
ENSNBRG00000005344	tnrc6c1	97	53.047	ENSBTAG00000018658	TNRC6C	100	49.666	Bos_taurus
ENSNBRG00000005344	tnrc6c1	99	49.100	ENSCJAG00000019431	TNRC6C	91	53.119	Callithrix_jacchus
ENSNBRG00000005344	tnrc6c1	98	54.221	ENSCAFG00000005224	TNRC6C	93	49.336	Canis_familiaris
ENSNBRG00000005344	tnrc6c1	98	53.925	ENSCAFG00020006661	TNRC6C	93	49.127	Canis_lupus_dingo
ENSNBRG00000005344	tnrc6c1	98	53.500	ENSCHIG00000026004	TNRC6C	100	50.034	Capra_hircus
ENSNBRG00000005344	tnrc6c1	91	50.430	ENSTSYG00000005403	TNRC6C	100	50.532	Carlito_syrichta
ENSNBRG00000005344	tnrc6c1	75	49.781	ENSCAPG00000007307	TNRC6C	93	46.441	Cavia_aperea
ENSNBRG00000005344	tnrc6c1	75	53.897	ENSCPOG00000000467	TNRC6C	99	47.935	Cavia_porcellus
ENSNBRG00000005344	tnrc6c1	99	49.285	ENSCCAG00000030524	TNRC6C	91	53.356	Cebus_capucinus
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSCATG00000033135	TNRC6C	100	50.028	Cercocebus_atys
ENSNBRG00000005344	tnrc6c1	98	52.953	ENSCLAG00000011139	TNRC6C	93	48.294	Chinchilla_lanigera
ENSNBRG00000005344	tnrc6c1	99	49.282	ENSCSAG00000005167	TNRC6C	93	49.067	Chlorocebus_sabaeus
ENSNBRG00000005344	tnrc6c1	65	67.227	ENSCHOG00000000088	TNRC6C	65	66.387	Choloepus_hoffmanni
ENSNBRG00000005344	tnrc6c1	100	48.326	ENSCPBG00000027960	TNRC6C	100	50.672	Chrysemys_picta_bellii
ENSNBRG00000005344	tnrc6c1	79	54.527	ENSCANG00000041771	TNRC6C	100	50.112	Colobus_angolensis_palliatus
ENSNBRG00000005344	tnrc6c1	99	46.854	ENSCGRG00001022686	Tnrc6c	100	47.098	Cricetulus_griseus_chok1gshd
ENSNBRG00000005344	tnrc6c1	99	46.999	ENSCGRG00000018041	Tnrc6c	100	47.098	Cricetulus_griseus_crigri
ENSNBRG00000005344	tnrc6c1	99	78.542	ENSCSEG00000012744	tnrc6c1	95	77.928	Cynoglossus_semilaevis
ENSNBRG00000005344	tnrc6c1	99	61.382	ENSDARG00000076847	tnrc6c1	99	61.145	Danio_rerio
ENSNBRG00000005344	tnrc6c1	99	48.278	ENSDNOG00000003247	TNRC6C	95	48.329	Dasypus_novemcinctus
ENSNBRG00000005344	tnrc6c1	79	49.453	ENSDORG00000004558	Tnrc6c	98	49.482	Dipodomys_ordii
ENSNBRG00000005344	tnrc6c1	87	54.212	ENSETEG00000005527	TNRC6C	82	53.350	Echinops_telfairi
ENSNBRG00000005344	tnrc6c1	90	52.132	ENSEASG00005004799	TNRC6C	100	48.318	Equus_asinus_asinus
ENSNBRG00000005344	tnrc6c1	98	53.365	ENSECAG00000012486	TNRC6C	93	48.695	Equus_caballus
ENSNBRG00000005344	tnrc6c1	93	56.082	ENSEEUG00000010008	TNRC6C	92	55.596	Erinaceus_europaeus
ENSNBRG00000005344	tnrc6c1	99	52.621	ENSFCAG00000028358	TNRC6C	100	48.412	Felis_catus
ENSNBRG00000005344	tnrc6c1	89	54.410	ENSFALG00000000848	TNRC6C	100	49.452	Ficedula_albicollis
ENSNBRG00000005344	tnrc6c1	97	48.728	ENSFDAG00000010368	TNRC6C	99	47.967	Fukomys_damarensis
ENSNBRG00000005344	tnrc6c1	99	80.613	ENSFHEG00000002936	tnrc6c1	100	78.378	Fundulus_heteroclitus
ENSNBRG00000005344	tnrc6c1	96	55.666	ENSGALG00000001725	TNRC6C	100	50.533	Gallus_gallus
ENSNBRG00000005344	tnrc6c1	100	81.727	ENSGAFG00000019019	tnrc6c1	100	81.098	Gambusia_affinis
ENSNBRG00000005344	tnrc6c1	99	74.089	ENSGACG00000012320	tnrc6c1	92	74.161	Gasterosteus_aculeatus
ENSNBRG00000005344	tnrc6c1	99	50.212	ENSGAGG00000022043	TNRC6C	100	49.757	Gopherus_agassizii
ENSNBRG00000005344	tnrc6c1	98	53.804	ENSGGOG00000011304	TNRC6C	93	53.070	Gorilla_gorilla
ENSNBRG00000005344	tnrc6c1	100	99.282	ENSHBUG00000010846	tnrc6c1	100	99.282	Haplochromis_burtoni
ENSNBRG00000005344	tnrc6c1	98	52.679	ENSHGLG00000004809	TNRC6C	90	51.821	Heterocephalus_glaber_female
ENSNBRG00000005344	tnrc6c1	98	52.296	ENSHGLG00100012597	TNRC6C	90	51.509	Heterocephalus_glaber_male
ENSNBRG00000005344	tnrc6c1	99	60.718	ENSIPUG00000000818	tnrc6c1	94	60.625	Ictalurus_punctatus
ENSNBRG00000005344	tnrc6c1	97	53.338	ENSSTOG00000009101	TNRC6C	95	52.811	Ictidomys_tridecemlineatus
ENSNBRG00000005344	tnrc6c1	97	52.860	ENSJJAG00000017055	Tnrc6c	92	51.399	Jaculus_jaculus
ENSNBRG00000005344	tnrc6c1	98	74.619	ENSKMAG00000021023	tnrc6c1	100	75.218	Kryptolebias_marmoratus
ENSNBRG00000005344	tnrc6c1	77	50.000	ENSLACG00000015283	TNRC6C	95	66.480	Latimeria_chalumnae
ENSNBRG00000005344	tnrc6c1	99	59.989	ENSLOCG00000013377	tnrc6c1	89	75.036	Lepisosteus_oculatus
ENSNBRG00000005344	tnrc6c1	99	51.298	ENSLAFG00000011122	TNRC6C	98	61.373	Loxodonta_africana
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSMFAG00000043943	TNRC6C	100	50.028	Macaca_fascicularis
ENSNBRG00000005344	tnrc6c1	99	49.389	ENSMMUG00000011924	TNRC6C	98	51.161	Macaca_mulatta
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSMNEG00000030405	TNRC6C	98	51.161	Macaca_nemestrina
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSMLEG00000033436	TNRC6C	100	50.028	Mandrillus_leucophaeus
ENSNBRG00000005344	tnrc6c1	100	82.208	ENSMAMG00000023613	tnrc6c1	100	82.746	Mastacembelus_armatus
ENSNBRG00000005344	tnrc6c1	99	99.099	ENSMZEG00005010920	tnrc6c1	100	97.020	Maylandia_zebra
ENSNBRG00000005344	tnrc6c1	93	67.376	ENSMGAG00000003906	TNRC6C	87	67.376	Meleagris_gallopavo
ENSNBRG00000005344	tnrc6c1	90	51.233	ENSMAUG00000021618	Tnrc6c	100	47.579	Mesocricetus_auratus
ENSNBRG00000005344	tnrc6c1	99	48.360	ENSMICG00000003952	TNRC6C	100	50.000	Microcebus_murinus
ENSNBRG00000005344	tnrc6c1	98	51.158	ENSMOCG00000015879	Tnrc6c	96	51.168	Microtus_ochrogaster
ENSNBRG00000005344	tnrc6c1	94	80.581	ENSMMOG00000005203	tnrc6c1	100	80.705	Mola_mola
ENSNBRG00000005344	tnrc6c1	99	48.305	ENSMODG00000001785	TNRC6C	93	51.738	Monodelphis_domestica
ENSNBRG00000005344	tnrc6c1	99	46.903	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.699	Mus_caroli
ENSNBRG00000005344	tnrc6c1	99	47.043	ENSMUSG00000025571	Tnrc6c	99	47.539	Mus_musculus
ENSNBRG00000005344	tnrc6c1	98	51.567	MGP_PahariEiJ_G0018593	Tnrc6c	99	47.591	Mus_pahari
ENSNBRG00000005344	tnrc6c1	99	46.832	MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.323	Mus_spretus
ENSNBRG00000005344	tnrc6c1	99	53.288	ENSMPUG00000013348	TNRC6C	90	53.292	Mustela_putorius_furo
ENSNBRG00000005344	tnrc6c1	93	54.944	ENSMLUG00000014431	TNRC6C	92	47.087	Myotis_lucifugus
ENSNBRG00000005344	tnrc6c1	80	50.880	ENSNGAG00000012203	Tnrc6c	90	51.062	Nannospalax_galili
ENSNBRG00000005344	tnrc6c1	99	48.045	ENSNLEG00000000047	TNRC6C	93	47.772	Nomascus_leucogenys
ENSNBRG00000005344	tnrc6c1	94	45.815	ENSMEUG00000005104	TNRC6C	96	65.445	Notamacropus_eugenii
ENSNBRG00000005344	tnrc6c1	93	52.994	ENSODEG00000012499	TNRC6C	100	49.105	Octodon_degus
ENSNBRG00000005344	tnrc6c1	94	98.599	ENSONIG00000002210	tnrc6c1	100	98.599	Oreochromis_niloticus
ENSNBRG00000005344	tnrc6c1	73	53.916	ENSOANG00000009758	-	60	56.013	Ornithorhynchus_anatinus
ENSNBRG00000005344	tnrc6c1	100	77.190	ENSORLG00000009837	tnrc6c1	100	81.955	Oryzias_latipes
ENSNBRG00000005344	tnrc6c1	100	75.547	ENSORLG00020016510	tnrc6c1	100	77.965	Oryzias_latipes_hni
ENSNBRG00000005344	tnrc6c1	79	73.801	ENSORLG00015000171	tnrc6c1	97	74.595	Oryzias_latipes_hsok
ENSNBRG00000005344	tnrc6c1	100	78.601	ENSOMEG00000000357	tnrc6c1	100	78.613	Oryzias_melastigma
ENSNBRG00000005344	tnrc6c1	92	53.214	ENSOGAG00000007197	TNRC6C	100	49.271	Otolemur_garnettii
ENSNBRG00000005344	tnrc6c1	94	50.623	ENSOARG00000006041	TNRC6C	91	46.278	Ovis_aries
ENSNBRG00000005344	tnrc6c1	98	54.229	ENSPPAG00000027160	TNRC6C	93	53.288	Pan_paniscus
ENSNBRG00000005344	tnrc6c1	79	52.757	ENSPPRG00000018881	TNRC6C	98	51.401	Panthera_pardus
ENSNBRG00000005344	tnrc6c1	85	56.109	ENSPTIG00000008791	TNRC6C	81	55.503	Panthera_tigris_altaica
ENSNBRG00000005344	tnrc6c1	98	54.229	ENSPTRG00000009699	TNRC6C	93	53.288	Pan_troglodytes
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSPANG00000019994	TNRC6C	98	50.955	Papio_anubis
ENSNBRG00000005344	tnrc6c1	94	56.955	ENSPKIG00000005428	tnrc6c1	100	56.913	Paramormyrops_kingsleyae
ENSNBRG00000005344	tnrc6c1	96	53.402	ENSPSIG00000018069	TNRC6C	99	48.398	Pelodiscus_sinensis
ENSNBRG00000005344	tnrc6c1	84	79.365	ENSPMGG00000022911	tnrc6c1	98	80.723	Periophthalmus_magnuspinnatus
ENSNBRG00000005344	tnrc6c1	98	51.875	ENSPEMG00000009785	Tnrc6c	100	45.697	Peromyscus_maniculatus_bairdii
ENSNBRG00000005344	tnrc6c1	99	81.813	ENSPFOG00000012560	tnrc6c1	99	75.446	Poecilia_formosa
ENSNBRG00000005344	tnrc6c1	94	81.858	ENSPLAG00000021055	tnrc6c1	100	81.246	Poecilia_latipinna
ENSNBRG00000005344	tnrc6c1	98	54.527	ENSPPYG00000008679	TNRC6C	91	53.581	Pongo_abelii
ENSNBRG00000005344	tnrc6c1	84	61.822	ENSPCAG00000012510	TNRC6C	89	65.914	Procavia_capensis
ENSNBRG00000005344	tnrc6c1	94	49.750	ENSPCOG00000021451	TNRC6C	100	50.139	Propithecus_coquereli
ENSNBRG00000005344	tnrc6c1	87	66.949	ENSPVAG00000002008	TNRC6C	95	66.102	Pteropus_vampyrus
ENSNBRG00000005344	tnrc6c1	100	96.954	ENSPNYG00000014477	tnrc6c1	100	98.730	Pundamilia_nyererei
ENSNBRG00000005344	tnrc6c1	75	54.250	ENSRNOG00000022395	Tnrc6c	98	47.497	Rattus_norvegicus
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSRBIG00000027777	TNRC6C	93	48.140	Rhinopithecus_bieti
ENSNBRG00000005344	tnrc6c1	99	49.232	ENSRROG00000042912	TNRC6C	93	49.018	Rhinopithecus_roxellana
ENSNBRG00000005344	tnrc6c1	99	49.259	ENSSBOG00000023981	TNRC6C	98	53.682	Saimiri_boliviensis_boliviensis
ENSNBRG00000005344	tnrc6c1	54	66.560	ENSSHAG00000018330	-	99	65.987	Sarcophilus_harrisii
ENSNBRG00000005344	tnrc6c1	99	59.755	ENSSFOG00015006475	tnrc6c1	96	59.195	Scleropages_formosus
ENSNBRG00000005344	tnrc6c1	54	61.505	ENSSFOG00015004735	-	99	67.095	Scleropages_formosus
ENSNBRG00000005344	tnrc6c1	100	82.532	ENSSMAG00000012761	tnrc6c1	100	81.594	Scophthalmus_maximus
ENSNBRG00000005344	tnrc6c1	99	85.495	ENSSDUG00000002366	tnrc6c1	98	85.192	Seriola_dumerili
ENSNBRG00000005344	tnrc6c1	94	85.162	ENSSLDG00000025613	tnrc6c1	100	85.028	Seriola_lalandi_dorsalis
ENSNBRG00000005344	tnrc6c1	82	68.067	ENSSARG00000006816	TNRC6C	90	66.387	Sorex_araneus
ENSNBRG00000005344	tnrc6c1	80	51.282	ENSSPUG00000007341	TNRC6C	90	54.346	Sphenodon_punctatus
ENSNBRG00000005344	tnrc6c1	98	85.689	ENSSPAG00000014977	tnrc6c1	98	85.968	Stegastes_partitus
ENSNBRG00000005344	tnrc6c1	78	63.873	ENSSSCG00000034373	TNRC6C	81	69.120	Sus_scrofa
ENSNBRG00000005344	tnrc6c1	95	53.665	ENSTGUG00000007733	TNRC6C	99	48.599	Taeniopygia_guttata
ENSNBRG00000005344	tnrc6c1	99	76.955	ENSTRUG00000011685	tnrc6c1	99	76.733	Takifugu_rubripes
ENSNBRG00000005344	tnrc6c1	99	72.315	ENSTNIG00000005273	tnrc6c1	100	78.858	Tetraodon_nigroviridis
ENSNBRG00000005344	tnrc6c1	65	48.518	ENSTBEG00000005046	TNRC6C	100	48.259	Tupaia_belangeri
ENSNBRG00000005344	tnrc6c1	97	52.335	ENSTTRG00000010828	TNRC6C	99	48.431	Tursiops_truncatus
ENSNBRG00000005344	tnrc6c1	98	51.294	ENSUMAG00000013614	TNRC6C	93	47.826	Ursus_maritimus
ENSNBRG00000005344	tnrc6c1	50	55.666	ENSVPAG00000006765	-	95	51.014	Vicugna_pacos
ENSNBRG00000005344	tnrc6c1	80	52.865	ENSVVUG00000015268	TNRC6C	82	53.108	Vulpes_vulpes
ENSNBRG00000005344	tnrc6c1	91	48.585	ENSXETG00000019470	tnrc6c	99	47.039	Xenopus_tropicalis
ENSNBRG00000005344	tnrc6c1	100	82.021	ENSXMAG00000025971	tnrc6c1	100	81.472	Xiphophorus_maculatus