EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000006681 (Gene tree)
Gene ID: 102797100
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease domain-containing protein 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 175864 bases
Position: chrJH422274.1:8983494-9159357
Accession: 102797100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000008540	TUDOR	PF00567.24	3.1e-28	1	1
ENSNBRP00000008518	TUDOR	PF00567.24	3.4e-28	1	1
ENSNBRP00000008518	SNase	PF00565.17	1.7e-65	1	4
ENSNBRP00000008518	SNase	PF00565.17	1.7e-65	2	4
ENSNBRP00000008518	SNase	PF00565.17	1.7e-65	3	4
ENSNBRP00000008518	SNase	PF00565.17	1.7e-65	4	4
ENSNBRP00000008540	SNase	PF00565.17	1.5e-62	1	4
ENSNBRP00000008540	SNase	PF00565.17	1.5e-62	2	4
ENSNBRP00000008540	SNase	PF00565.17	1.5e-62	3	4
ENSNBRP00000008540	SNase	PF00565.17	1.5e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000008769	-	3999	XM_006780760	ENSNBRP00000008518	910 (aa)	XP_006780823	UPI0003EBE74F
ENSNBRT00000008791	-	5382	-	ENSNBRP00000008540	919 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000006681's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000006681's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000006681	snd1	99	83.853	ENSG00000197157	SND1	99	82.857	Homo_sapiens
ENSNBRG00000006681	snd1	100	95.060	ENSAPOG00000017599	snd1	100	95.060	Acanthochromis_polyacanthus
ENSNBRG00000006681	snd1	100	83.042	ENSAMEG00000004664	SND1	94	83.042	Ailuropoda_melanoleuca
ENSNBRG00000006681	snd1	100	92.645	ENSACIG00000003551	snd1	100	92.645	Amphilophus_citrinellus
ENSNBRG00000006681	snd1	100	95.060	ENSAOCG00000014166	snd1	100	95.060	Amphiprion_ocellaris
ENSNBRG00000006681	snd1	100	94.841	ENSAPEG00000007067	snd1	100	94.841	Amphiprion_percula
ENSNBRG00000006681	snd1	98	94.631	ENSATEG00000018475	snd1	90	94.352	Anabas_testudineus
ENSNBRG00000006681	snd1	99	83.964	ENSANAG00000034463	SND1	99	84.199	Aotus_nancymaae
ENSNBRG00000006681	snd1	100	99.780	ENSACLG00000022897	snd1	100	99.780	Astatotilapia_calliptera
ENSNBRG00000006681	snd1	99	90.110	ENSAMXG00000016318	snd1	99	90.110	Astyanax_mexicanus
ENSNBRG00000006681	snd1	99	84.187	ENSBTAG00000010692	SND1	99	83.187	Bos_taurus
ENSNBRG00000006681	snd1	99	46.703	WBGene00006626	tsn-1	99	47.174	Caenorhabditis_elegans
ENSNBRG00000006681	snd1	99	83.742	ENSCJAG00000017668	SND1	99	83.973	Callithrix_jacchus
ENSNBRG00000006681	snd1	100	83.333	ENSCAFG00000001700	SND1	100	83.333	Canis_familiaris
ENSNBRG00000006681	snd1	100	83.333	ENSCAFG00020021639	SND1	100	83.333	Canis_lupus_dingo
ENSNBRG00000006681	snd1	99	84.076	ENSCHIG00000023390	SND1	98	84.312	Capra_hircus
ENSNBRG00000006681	snd1	70	86.667	ENSTSYG00000004979	SND1	96	86.667	Carlito_syrichta
ENSNBRG00000006681	snd1	98	73.192	ENSCAPG00000010677	SND1	98	73.192	Cavia_aperea
ENSNBRG00000006681	snd1	99	83.853	ENSCPOG00000006251	SND1	99	82.857	Cavia_porcellus
ENSNBRG00000006681	snd1	99	83.964	ENSCCAG00000036847	SND1	98	84.199	Cebus_capucinus
ENSNBRG00000006681	snd1	99	84.076	ENSCATG00000035214	SND1	99	84.312	Cercocebus_atys
ENSNBRG00000006681	snd1	99	84.076	ENSCLAG00000011796	SND1	100	83.224	Chinchilla_lanigera
ENSNBRG00000006681	snd1	99	84.076	ENSCSAG00000010182	SND1	99	83.077	Chlorocebus_sabaeus
ENSNBRG00000006681	snd1	78	76.471	ENSCHOG00000002218	SND1	86	76.471	Choloepus_hoffmanni
ENSNBRG00000006681	snd1	100	83.535	ENSCPBG00000018094	SND1	100	83.535	Chrysemys_picta_bellii
ENSNBRG00000006681	snd1	98	57.586	ENSCING00000000524	-	99	57.003	Ciona_intestinalis
ENSNBRG00000006681	snd1	99	57.503	ENSCSAVG00000008807	-	99	57.503	Ciona_savignyi
ENSNBRG00000006681	snd1	99	84.076	ENSCANG00000035119	SND1	99	83.077	Colobus_angolensis_palliatus
ENSNBRG00000006681	snd1	99	83.742	ENSCGRG00001022514	Snd1	100	83.004	Cricetulus_griseus_chok1gshd
ENSNBRG00000006681	snd1	97	83.973	ENSCGRG00000012277	Snd1	99	83.973	Cricetulus_griseus_crigri
ENSNBRG00000006681	snd1	100	92.536	ENSCSEG00000008661	snd1	100	92.536	Cynoglossus_semilaevis
ENSNBRG00000006681	snd1	100	94.182	ENSCVAG00000010316	snd1	100	94.182	Cyprinodon_variegatus
ENSNBRG00000006681	snd1	100	89.704	ENSDARG00000006766	snd1	99	91.182	Danio_rerio
ENSNBRG00000006681	snd1	97	82.227	ENSDNOG00000006795	SND1	100	82.227	Dasypus_novemcinctus
ENSNBRG00000006681	snd1	99	83.853	ENSDORG00000000336	Snd1	99	82.857	Dipodomys_ordii
ENSNBRG00000006681	snd1	99	50.970	FBgn0035121	Tudor-SN	99	50.638	Drosophila_melanogaster
ENSNBRG00000006681	snd1	90	91.667	ENSETEG00000000375	SND1	92	91.667	Echinops_telfairi
ENSNBRG00000006681	snd1	68	64.921	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSNBRG00000006681	snd1	99	82.694	ENSEASG00005008513	SND1	99	81.730	Equus_asinus_asinus
ENSNBRG00000006681	snd1	99	83.853	ENSECAG00000011451	SND1	99	82.857	Equus_caballus
ENSNBRG00000006681	snd1	99	74.722	ENSEEUG00000014737	SND1	99	73.956	Erinaceus_europaeus
ENSNBRG00000006681	snd1	99	88.462	ENSELUG00000001805	snd1	96	88.462	Esox_lucius
ENSNBRG00000006681	snd1	100	83.224	ENSFCAG00000008289	SND1	100	83.224	Felis_catus
ENSNBRG00000006681	snd1	98	83.817	ENSFDAG00000015881	SND1	100	82.785	Fukomys_damarensis
ENSNBRG00000006681	snd1	100	92.374	ENSFHEG00000004093	snd1	99	93.970	Fundulus_heteroclitus
ENSNBRG00000006681	snd1	75	84.463	ENSGMOG00000018932	snd1	66	84.463	Gadus_morhua
ENSNBRG00000006681	snd1	100	94.731	ENSGAFG00000008421	snd1	100	94.731	Gambusia_affinis
ENSNBRG00000006681	snd1	100	60.412	ENSGACG00000019793	snd1	100	60.412	Gasterosteus_aculeatus
ENSNBRG00000006681	snd1	99	84.076	ENSGGOG00000009614	SND1	99	84.312	Gorilla_gorilla
ENSNBRG00000006681	snd1	100	99.670	ENSHBUG00000019135	snd1	100	99.670	Haplochromis_burtoni
ENSNBRG00000006681	snd1	99	83.742	ENSHGLG00000003618	SND1	99	82.747	Heterocephalus_glaber_female
ENSNBRG00000006681	snd1	99	83.077	ENSHGLG00100012449	SND1	99	83.077	Heterocephalus_glaber_male
ENSNBRG00000006681	snd1	100	92.097	ENSHCOG00000005266	snd1	100	92.097	Hippocampus_comes
ENSNBRG00000006681	snd1	99	88.584	ENSIPUG00000013279	snd1	99	88.584	Ictalurus_punctatus
ENSNBRG00000006681	snd1	99	84.076	ENSSTOG00000002140	SND1	99	83.077	Ictidomys_tridecemlineatus
ENSNBRG00000006681	snd1	99	83.964	ENSJJAG00000009561	Snd1	99	82.967	Jaculus_jaculus
ENSNBRG00000006681	snd1	100	94.292	ENSKMAG00000016997	snd1	100	94.292	Kryptolebias_marmoratus
ENSNBRG00000006681	snd1	100	93.085	ENSLBEG00000013563	snd1	100	93.085	Labrus_bergylta
ENSNBRG00000006681	snd1	98	88.717	ENSLOCG00000015537	snd1	99	87.813	Lepisosteus_oculatus
ENSNBRG00000006681	snd1	99	83.407	ENSLAFG00000009696	SND1	99	83.407	Loxodonta_africana
ENSNBRG00000006681	snd1	99	84.076	ENSMFAG00000038114	SND1	99	84.312	Macaca_fascicularis
ENSNBRG00000006681	snd1	99	84.076	ENSMMUG00000015432	SND1	99	83.077	Macaca_mulatta
ENSNBRG00000006681	snd1	99	84.076	ENSMNEG00000039808	SND1	100	84.329	Macaca_nemestrina
ENSNBRG00000006681	snd1	99	83.964	ENSMLEG00000029040	SND1	100	84.216	Mandrillus_leucophaeus
ENSNBRG00000006681	snd1	100	95.060	ENSMAMG00000011739	snd1	100	95.060	Mastacembelus_armatus
ENSNBRG00000006681	snd1	100	99.780	ENSMZEG00005005681	snd1	100	99.780	Maylandia_zebra
ENSNBRG00000006681	snd1	99	83.964	ENSMICG00000000097	SND1	99	82.967	Microcebus_murinus
ENSNBRG00000006681	snd1	99	84.187	ENSMOCG00000005040	Snd1	99	83.187	Microtus_ochrogaster
ENSNBRG00000006681	snd1	100	93.853	ENSMMOG00000001795	snd1	100	93.853	Mola_mola
ENSNBRG00000006681	snd1	98	83.817	ENSMODG00000015182	SND1	100	82.785	Monodelphis_domestica
ENSNBRG00000006681	snd1	100	94.292	ENSMALG00000012071	snd1	100	94.292	Monopterus_albus
ENSNBRG00000006681	snd1	98	84.040	MGP_CAROLIEiJ_G0028159	Snd1	99	84.317	Mus_caroli
ENSNBRG00000006681	snd1	98	83.817	ENSMUSG00000001424	Snd1	99	82.673	Mus_musculus
ENSNBRG00000006681	snd1	98	84.040	MGP_PahariEiJ_G0021917	Snd1	99	84.317	Mus_pahari
ENSNBRG00000006681	snd1	98	84.040	MGP_SPRETEiJ_G0029159	Snd1	99	83.003	Mus_spretus
ENSNBRG00000006681	snd1	100	83.224	ENSMPUG00000006545	SND1	100	83.224	Mustela_putorius_furo
ENSNBRG00000006681	snd1	97	83.055	ENSMLUG00000017130	SND1	99	83.055	Myotis_lucifugus
ENSNBRG00000006681	snd1	99	83.853	ENSNGAG00000011186	Snd1	99	82.857	Nannospalax_galili
ENSNBRG00000006681	snd1	99	83.407	ENSNLEG00000012263	SND1	100	84.329	Nomascus_leucogenys
ENSNBRG00000006681	snd1	91	91.667	ENSOPRG00000013405	SND1	92	91.667	Ochotona_princeps
ENSNBRG00000006681	snd1	99	84.076	ENSODEG00000011502	SND1	100	83.205	Octodon_degus
ENSNBRG00000006681	snd1	100	99.451	ENSONIG00000011481	snd1	97	99.451	Oreochromis_niloticus
ENSNBRG00000006681	snd1	98	83.483	ENSOANG00000000817	SND1	98	83.483	Ornithorhynchus_anatinus
ENSNBRG00000006681	snd1	99	82.637	ENSOCUG00000001620	SND1	99	82.637	Oryctolagus_cuniculus
ENSNBRG00000006681	snd1	100	92.975	ENSORLG00000015201	snd1	100	92.975	Oryzias_latipes
ENSNBRG00000006681	snd1	100	93.194	ENSORLG00020013991	snd1	100	93.194	Oryzias_latipes_hni
ENSNBRG00000006681	snd1	100	93.194	ENSORLG00015012436	snd1	100	93.194	Oryzias_latipes_hsok
ENSNBRG00000006681	snd1	100	93.743	ENSOMEG00000006406	snd1	100	93.743	Oryzias_melastigma
ENSNBRG00000006681	snd1	99	83.889	ENSOGAG00000013356	SND1	93	83.224	Otolemur_garnettii
ENSNBRG00000006681	snd1	97	81.962	ENSOARG00000002149	SND1	100	81.962	Ovis_aries
ENSNBRG00000006681	snd1	99	83.964	ENSPPAG00000042947	SND1	99	83.594	Pan_paniscus
ENSNBRG00000006681	snd1	100	83.224	ENSPPRG00000004494	SND1	100	83.224	Panthera_pardus
ENSNBRG00000006681	snd1	100	83.114	ENSPTIG00000014214	SND1	100	83.114	Panthera_tigris_altaica
ENSNBRG00000006681	snd1	99	83.964	ENSPTRG00000023911	SND1	99	84.199	Pan_troglodytes
ENSNBRG00000006681	snd1	97	84.312	ENSPANG00000011997	SND1	99	84.312	Papio_anubis
ENSNBRG00000006681	snd1	99	86.865	ENSPKIG00000023494	snd1	99	86.260	Paramormyrops_kingsleyae
ENSNBRG00000006681	snd1	92	93.780	ENSPMGG00000003629	snd1	100	93.780	Periophthalmus_magnuspinnatus
ENSNBRG00000006681	snd1	99	83.964	ENSPEMG00000010240	Snd1	99	82.967	Peromyscus_maniculatus_bairdii
ENSNBRG00000006681	snd1	97	74.041	ENSPMAG00000007915	-	99	74.041	Petromyzon_marinus
ENSNBRG00000006681	snd1	98	84.375	ENSPCIG00000011561	SND1	100	83.333	Phascolarctos_cinereus
ENSNBRG00000006681	snd1	100	94.731	ENSPFOG00000001557	snd1	100	94.731	Poecilia_formosa
ENSNBRG00000006681	snd1	100	94.951	ENSPLAG00000018459	snd1	97	94.951	Poecilia_latipinna
ENSNBRG00000006681	snd1	100	94.731	ENSPMEG00000006803	snd1	100	94.731	Poecilia_mexicana
ENSNBRG00000006681	snd1	100	94.621	ENSPREG00000002189	snd1	100	94.621	Poecilia_reticulata
ENSNBRG00000006681	snd1	91	91.667	ENSPPYG00000017972	SND1	99	91.667	Pongo_abelii
ENSNBRG00000006681	snd1	99	74.165	ENSPCAG00000011305	SND1	99	73.407	Procavia_capensis
ENSNBRG00000006681	snd1	99	84.076	ENSPCOG00000026791	SND1	100	84.329	Propithecus_coquereli
ENSNBRG00000006681	snd1	99	82.294	ENSPVAG00000013945	SND1	99	81.319	Pteropus_vampyrus
ENSNBRG00000006681	snd1	100	99.670	ENSPNYG00000000932	snd1	100	99.670	Pundamilia_nyererei
ENSNBRG00000006681	snd1	99	90.659	ENSPNAG00000001206	snd1	99	90.659	Pygocentrus_nattereri
ENSNBRG00000006681	snd1	98	83.817	ENSRNOG00000031173	Snd1	100	82.976	Rattus_norvegicus
ENSNBRG00000006681	snd1	70	87.079	ENSRBIG00000027782	-	93	87.121	Rhinopithecus_bieti
ENSNBRG00000006681	snd1	99	84.076	ENSRROG00000033020	SND1	99	83.077	Rhinopithecus_roxellana
ENSNBRG00000006681	snd1	99	83.964	ENSSBOG00000032461	SND1	99	84.199	Saimiri_boliviensis_boliviensis
ENSNBRG00000006681	snd1	98	81.011	ENSSHAG00000015359	SND1	100	81.011	Sarcophilus_harrisii
ENSNBRG00000006681	snd1	98	87.916	ENSSFOG00015001103	snd1	99	87.037	Scleropages_formosus
ENSNBRG00000006681	snd1	100	93.524	ENSSMAG00000001932	snd1	95	93.524	Scophthalmus_maximus
ENSNBRG00000006681	snd1	100	94.951	ENSSDUG00000002699	snd1	94	94.951	Seriola_dumerili
ENSNBRG00000006681	snd1	100	87.706	ENSSLDG00000001950	snd1	100	87.706	Seriola_lalandi_dorsalis
ENSNBRG00000006681	snd1	86	79.529	ENSSARG00000004877	SND1	92	79.529	Sorex_araneus
ENSNBRG00000006681	snd1	70	80.243	ENSSPUG00000017586	SND1	96	80.243	Sphenodon_punctatus
ENSNBRG00000006681	snd1	73	94.416	ENSSPAG00000021398	snd1	99	94.416	Stegastes_partitus
ENSNBRG00000006681	snd1	99	84.076	ENSSSCG00000016590	SND1	99	83.077	Sus_scrofa
ENSNBRG00000006681	snd1	100	93.624	ENSTRUG00000014067	snd1	100	91.767	Takifugu_rubripes
ENSNBRG00000006681	snd1	100	92.755	ENSTNIG00000011019	snd1	100	92.755	Tetraodon_nigroviridis
ENSNBRG00000006681	snd1	93	78.471	ENSTBEG00000003999	SND1	100	78.471	Tupaia_belangeri
ENSNBRG00000006681	snd1	99	79.844	ENSTTRG00000006059	SND1	99	79.231	Tursiops_truncatus
ENSNBRG00000006681	snd1	87	83.650	ENSUAMG00000005604	-	93	83.650	Ursus_americanus
ENSNBRG00000006681	snd1	69	76.440	ENSUAMG00000002820	-	89	76.440	Ursus_americanus
ENSNBRG00000006681	snd1	100	83.224	ENSUMAG00000005960	SND1	100	83.224	Ursus_maritimus
ENSNBRG00000006681	snd1	77	91.667	ENSVPAG00000008302	SND1	74	91.667	Vicugna_pacos
ENSNBRG00000006681	snd1	100	83.224	ENSVVUG00000007226	SND1	100	83.224	Vulpes_vulpes
ENSNBRG00000006681	snd1	97	80.947	ENSXETG00000023043	snd1	100	80.936	Xenopus_tropicalis
ENSNBRG00000006681	snd1	92	92.043	ENSXCOG00000013629	snd1	99	92.043	Xiphophorus_couchianus
ENSNBRG00000006681	snd1	100	95.170	ENSXMAG00000011469	snd1	100	95.170	Xiphophorus_maculatus