EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000006727 (Gene tree)
Gene ID: 102785002
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR domain zinc finger protein 12-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 3002 bases
Position: chrJH422287.1:6591848-6594849
Accession: 102785002
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000008582	zf-C2H2	PF00096.26	6.5e-11	1	2
ENSNBRP00000008582	zf-C2H2	PF00096.26	6.5e-11	2	2
ENSNBRP00000008582	zf-met	PF12874.7	8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000008834	-	1128	XM_006788957	ENSNBRP00000008582	375 (aa)	XP_006789020	-

Gene Model

Click here to download ENSNBRG00000006727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000006727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000006727	prdm12b	100	73.368	ENSNBRG00000024312	-	100	73.890
ENSNBRG00000006727	prdm12b	71	41.892	ENSNBRG00000023669	prdm14	71	41.892
ENSNBRG00000006727	prdm12b	65	37.500	ENSNBRG00000004976	prdm5	96	38.554

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000006727	prdm12b	93	80.286	ENSG00000130711	PRDM12	99	74.674	Homo_sapiens
ENSNBRG00000006727	prdm12b	100	93.750	ENSAPOG00000016051	prdm12b	100	93.750	Acanthochromis_polyacanthus
ENSNBRG00000006727	prdm12b	100	67.989	ENSAPOG00000018234	-	100	67.989	Acanthochromis_polyacanthus
ENSNBRG00000006727	prdm12b	90	80.473	ENSAMEG00000016234	PRDM12	99	80.531	Ailuropoda_melanoleuca
ENSNBRG00000006727	prdm12b	100	96.267	ENSACIG00000019578	prdm12b	100	96.267	Amphilophus_citrinellus
ENSNBRG00000006727	prdm12b	100	78.827	ENSACIG00000005193	-	100	79.434	Amphilophus_citrinellus
ENSNBRG00000006727	prdm12b	100	91.270	ENSAOCG00000015040	prdm12b	100	92.328	Amphiprion_ocellaris
ENSNBRG00000006727	prdm12b	100	72.658	ENSAPEG00000022849	-	99	73.165	Amphiprion_percula
ENSNBRG00000006727	prdm12b	100	91.270	ENSAPEG00000015092	prdm12b	100	92.328	Amphiprion_percula
ENSNBRG00000006727	prdm12b	100	81.443	ENSATEG00000014595	-	100	81.701	Anabas_testudineus
ENSNBRG00000006727	prdm12b	94	79.775	ENSANAG00000020616	PRDM12	97	79.885	Aotus_nancymaae
ENSNBRG00000006727	prdm12b	100	92.000	ENSACLG00000011876	prdm12b	100	92.000	Astatotilapia_calliptera
ENSNBRG00000006727	prdm12b	100	76.675	ENSACLG00000007631	-	100	76.617	Astatotilapia_calliptera
ENSNBRG00000006727	prdm12b	100	79.894	ENSAMXG00000008540	PRDM12	100	79.467	Astyanax_mexicanus
ENSNBRG00000006727	prdm12b	100	81.937	ENSAMXG00000033665	prdm12b	100	81.937	Astyanax_mexicanus
ENSNBRG00000006727	prdm12b	93	80.000	ENSBTAG00000023797	PRDM12	99	76.393	Bos_taurus
ENSNBRG00000006727	prdm12b	93	80.571	ENSCJAG00000020540	PRDM12	99	74.935	Callithrix_jacchus
ENSNBRG00000006727	prdm12b	82	79.870	ENSCAFG00000023076	PRDM12	99	74.852	Canis_familiaris
ENSNBRG00000006727	prdm12b	93	80.000	ENSCAFG00020024046	PRDM12	99	75.526	Canis_lupus_dingo
ENSNBRG00000006727	prdm12b	93	80.000	ENSCHIG00000025005	PRDM12	99	76.190	Capra_hircus
ENSNBRG00000006727	prdm12b	87	80.243	ENSCPOG00000005901	PRDM12	95	80.243	Cavia_porcellus
ENSNBRG00000006727	prdm12b	93	80.571	ENSCCAG00000037485	PRDM12	99	75.462	Cebus_capucinus
ENSNBRG00000006727	prdm12b	93	80.571	ENSCATG00000020327	PRDM12	99	75.462	Cercocebus_atys
ENSNBRG00000006727	prdm12b	91	80.290	ENSCLAG00000005499	PRDM12	90	80.290	Chinchilla_lanigera
ENSNBRG00000006727	prdm12b	93	80.571	ENSCSAG00000014756	PRDM12	99	75.000	Chlorocebus_sabaeus
ENSNBRG00000006727	prdm12b	100	77.719	ENSCPBG00000022628	PRDM12	99	77.719	Chrysemys_picta_bellii
ENSNBRG00000006727	prdm12b	93	80.000	ENSCGRG00001015005	Prdm12	99	75.393	Cricetulus_griseus_chok1gshd
ENSNBRG00000006727	prdm12b	100	79.231	ENSCVAG00000000944	-	100	79.744	Cyprinodon_variegatus
ENSNBRG00000006727	prdm12b	100	87.863	ENSCVAG00000017166	prdm12b	100	88.127	Cyprinodon_variegatus
ENSNBRG00000006727	prdm12b	100	83.113	ENSDARG00000007430	prdm12b	100	82.586	Danio_rerio
ENSNBRG00000006727	prdm12b	93	79.487	ENSDNOG00000042302	PRDM12	99	75.926	Dasypus_novemcinctus
ENSNBRG00000006727	prdm12b	85	67.868	ENSEBUG00000016780	prdm12b	73	67.568	Eptatretus_burgeri
ENSNBRG00000006727	prdm12b	94	78.933	ENSEASG00005008472	PRDM12	99	75.591	Equus_asinus_asinus
ENSNBRG00000006727	prdm12b	94	78.652	ENSECAG00000005933	PRDM12	99	75.328	Equus_caballus
ENSNBRG00000006727	prdm12b	100	85.185	ENSELUG00000013674	PRDM12	100	85.979	Esox_lucius
ENSNBRG00000006727	prdm12b	100	82.152	ENSELUG00000009905	prdm12b	100	80.315	Esox_lucius
ENSNBRG00000006727	prdm12b	93	80.000	ENSFCAG00000043086	PRDM12	99	75.726	Felis_catus
ENSNBRG00000006727	prdm12b	100	79.045	ENSFALG00000001445	PRDM12	89	78.780	Ficedula_albicollis
ENSNBRG00000006727	prdm12b	100	76.190	ENSFHEG00000007746	-	100	74.937	Fundulus_heteroclitus
ENSNBRG00000006727	prdm12b	100	87.895	ENSFHEG00000003944	prdm12b	100	88.158	Fundulus_heteroclitus
ENSNBRG00000006727	prdm12b	100	83.377	ENSGMOG00000011797	prdm12b	100	81.558	Gadus_morhua
ENSNBRG00000006727	prdm12b	100	79.045	ENSGALG00000003895	PRDM12	99	78.780	Gallus_gallus
ENSNBRG00000006727	prdm12b	100	88.220	ENSGAFG00000010827	prdm12b	99	88.220	Gambusia_affinis
ENSNBRG00000006727	prdm12b	100	89.211	ENSGACG00000016713	prdm12b	99	88.421	Gasterosteus_aculeatus
ENSNBRG00000006727	prdm12b	100	77.984	ENSGAGG00000014083	PRDM12	99	77.984	Gopherus_agassizii
ENSNBRG00000006727	prdm12b	93	80.000	ENSGGOG00000010568	PRDM12	99	74.607	Gorilla_gorilla
ENSNBRG00000006727	prdm12b	100	76.675	ENSHBUG00000022537	-	93	76.617	Haplochromis_burtoni
ENSNBRG00000006727	prdm12b	100	98.933	ENSHBUG00000022878	prdm12b	100	98.933	Haplochromis_burtoni
ENSNBRG00000006727	prdm12b	91	80.290	ENSHGLG00000013939	PRDM12	99	74.803	Heterocephalus_glaber_female
ENSNBRG00000006727	prdm12b	100	72.368	ENSHCOG00000021167	-	100	71.579	Hippocampus_comes
ENSNBRG00000006727	prdm12b	90	85.879	ENSHCOG00000003663	prdm12b	100	80.101	Hippocampus_comes
ENSNBRG00000006727	prdm12b	100	77.867	ENSIPUG00000019544	PRDM12	100	77.067	Ictalurus_punctatus
ENSNBRG00000006727	prdm12b	100	82.895	ENSIPUG00000017053	prdm12b	100	82.632	Ictalurus_punctatus
ENSNBRG00000006727	prdm12b	99	76.471	ENSSTOG00000005986	PRDM12	87	80.172	Ictidomys_tridecemlineatus
ENSNBRG00000006727	prdm12b	91	80.580	ENSJJAG00000005424	Prdm12	99	80.580	Jaculus_jaculus
ENSNBRG00000006727	prdm12b	100	82.759	ENSKMAG00000016921	prdm12b	100	83.498	Kryptolebias_marmoratus
ENSNBRG00000006727	prdm12b	94	78.873	ENSKMAG00000021205	-	94	77.994	Kryptolebias_marmoratus
ENSNBRG00000006727	prdm12b	100	87.047	ENSLBEG00000017769	prdm12b	100	86.528	Labrus_bergylta
ENSNBRG00000006727	prdm12b	100	79.948	ENSLBEG00000007776	-	100	78.646	Labrus_bergylta
ENSNBRG00000006727	prdm12b	100	78.249	ENSLACG00000017560	PRDM12	99	78.249	Latimeria_chalumnae
ENSNBRG00000006727	prdm12b	100	84.293	ENSLOCG00000005429	prdm12b	100	84.293	Lepisosteus_oculatus
ENSNBRG00000006727	prdm12b	93	81.322	ENSLAFG00000006979	PRDM12	90	78.814	Loxodonta_africana
ENSNBRG00000006727	prdm12b	100	75.457	ENSMFAG00000040322	PRDM12	99	74.674	Macaca_fascicularis
ENSNBRG00000006727	prdm12b	93	80.571	ENSMNEG00000037234	PRDM12	99	75.462	Macaca_nemestrina
ENSNBRG00000006727	prdm12b	100	92.368	ENSMAMG00000013212	prdm12b	100	92.368	Mastacembelus_armatus
ENSNBRG00000006727	prdm12b	100	74.129	ENSMAMG00000018988	-	100	74.627	Mastacembelus_armatus
ENSNBRG00000006727	prdm12b	100	76.296	ENSMZEG00005000415	PRDM12	100	75.990	Maylandia_zebra
ENSNBRG00000006727	prdm12b	98	78.706	ENSMGAG00000005438	PRDM12	98	78.437	Meleagris_gallopavo
ENSNBRG00000006727	prdm12b	100	75.853	ENSMAUG00000013040	Prdm12	99	75.066	Mesocricetus_auratus
ENSNBRG00000006727	prdm12b	94	79.379	ENSMICG00000015480	PRDM12	99	75.926	Microcebus_murinus
ENSNBRG00000006727	prdm12b	100	77.188	ENSMOCG00000021026	Prdm12	90	80.460	Microtus_ochrogaster
ENSNBRG00000006727	prdm12b	100	78.307	ENSMODG00000012108	PRDM12	99	78.042	Monodelphis_domestica
ENSNBRG00000006727	prdm12b	100	75.000	ENSMALG00000021901	prdm12b	99	74.474	Monopterus_albus
ENSNBRG00000006727	prdm12b	93	79.714	MGP_CAROLIEiJ_G0023414	Prdm12	99	75.328	Mus_caroli
ENSNBRG00000006727	prdm12b	93	79.714	ENSMUSG00000079466	Prdm12	99	75.328	Mus_musculus
ENSNBRG00000006727	prdm12b	93	79.714	MGP_PahariEiJ_G0024871	Prdm12	99	75.328	Mus_pahari
ENSNBRG00000006727	prdm12b	93	79.714	MGP_SPRETEiJ_G0024331	Prdm12	99	75.328	Mus_spretus
ENSNBRG00000006727	prdm12b	90	81.232	ENSNGAG00000018480	Prdm12	99	75.862	Nannospalax_galili
ENSNBRG00000006727	prdm12b	100	70.899	ENSMEUG00000003828	PRDM12	99	70.635	Notamacropus_eugenii
ENSNBRG00000006727	prdm12b	91	80.580	ENSOPRG00000008680	PRDM12	99	80.580	Ochotona_princeps
ENSNBRG00000006727	prdm12b	94	78.652	ENSODEG00000016282	PRDM12	62	80.290	Octodon_degus
ENSNBRG00000006727	prdm12b	63	75.732	ENSOANG00000001043	PRDM12	100	75.314	Ornithorhynchus_anatinus
ENSNBRG00000006727	prdm12b	89	76.418	ENSOCUG00000008241	PRDM12	96	79.747	Oryctolagus_cuniculus
ENSNBRG00000006727	prdm12b	100	88.391	ENSORLG00000007114	prdm12b	99	88.127	Oryzias_latipes
ENSNBRG00000006727	prdm12b	100	77.919	ENSORLG00000017558	-	100	78.426	Oryzias_latipes
ENSNBRG00000006727	prdm12b	100	78.426	ENSORLG00020013167	-	100	78.680	Oryzias_latipes_hni
ENSNBRG00000006727	prdm12b	100	86.877	ENSORLG00020019565	prdm12b	99	87.927	Oryzias_latipes_hni
ENSNBRG00000006727	prdm12b	100	88.654	ENSORLG00015007621	prdm12b	99	88.918	Oryzias_latipes_hsok
ENSNBRG00000006727	prdm12b	100	77.665	ENSORLG00015003435	-	100	78.173	Oryzias_latipes_hsok
ENSNBRG00000006727	prdm12b	100	89.005	ENSOMEG00000004134	prdm12b	99	89.529	Oryzias_melastigma
ENSNBRG00000006727	prdm12b	100	79.275	ENSOMEG00000007762	-	100	79.016	Oryzias_melastigma
ENSNBRG00000006727	prdm12b	92	80.172	ENSOGAG00000007557	PRDM12	99	80.172	Otolemur_garnettii
ENSNBRG00000006727	prdm12b	80	79.538	ENSPPAG00000031506	-	99	77.346	Pan_paniscus
ENSNBRG00000006727	prdm12b	100	70.899	ENSPPRG00000023024	PRDM12	92	70.899	Panthera_pardus
ENSNBRG00000006727	prdm12b	93	80.286	ENSPTRG00000043324	-	99	74.869	Pan_troglodytes
ENSNBRG00000006727	prdm12b	93	80.286	ENSPTRG00000021475	PRDM12	99	74.869	Pan_troglodytes
ENSNBRG00000006727	prdm12b	93	80.571	ENSPANG00000025967	PRDM12	99	75.462	Papio_anubis
ENSNBRG00000006727	prdm12b	100	84.433	ENSPKIG00000007228	prdm12b	100	84.697	Paramormyrops_kingsleyae
ENSNBRG00000006727	prdm12b	90	80.826	ENSPKIG00000004305	PRDM12	94	80.826	Paramormyrops_kingsleyae
ENSNBRG00000006727	prdm12b	100	77.984	ENSPSIG00000006739	PRDM12	99	77.984	Pelodiscus_sinensis
ENSNBRG00000006727	prdm12b	100	88.859	ENSPMGG00000008867	prdm12b	99	88.859	Periophthalmus_magnuspinnatus
ENSNBRG00000006727	prdm12b	100	74.747	ENSPMGG00000002356	-	100	74.242	Periophthalmus_magnuspinnatus
ENSNBRG00000006727	prdm12b	91	81.449	ENSPEMG00000009969	Prdm12	91	80.172	Peromyscus_maniculatus_bairdii
ENSNBRG00000006727	prdm12b	100	78.307	ENSPCIG00000024119	PRDM12	99	78.042	Phascolarctos_cinereus
ENSNBRG00000006727	prdm12b	100	88.947	ENSPFOG00000019841	prdm12b	100	87.368	Poecilia_formosa
ENSNBRG00000006727	prdm12b	100	87.273	ENSPLAG00000016626	prdm12b	99	87.273	Poecilia_latipinna
ENSNBRG00000006727	prdm12b	96	87.601	ENSPMEG00000016698	prdm12b	99	87.332	Poecilia_mexicana
ENSNBRG00000006727	prdm12b	100	86.788	ENSPREG00000015073	prdm12b	99	87.047	Poecilia_reticulata
ENSNBRG00000006727	prdm12b	95	74.521	ENSPREG00000003211	-	94	74.317	Poecilia_reticulata
ENSNBRG00000006727	prdm12b	96	79.006	ENSPPYG00000019694	PRDM12	93	80.523	Pongo_abelii
ENSNBRG00000006727	prdm12b	93	80.000	ENSPCOG00000022255	PRDM12	99	75.393	Propithecus_coquereli
ENSNBRG00000006727	prdm12b	93	79.714	ENSPVAG00000001511	PRDM12	99	75.131	Pteropus_vampyrus
ENSNBRG00000006727	prdm12b	100	99.200	ENSPNYG00000009607	prdm12b	100	99.200	Pundamilia_nyererei
ENSNBRG00000006727	prdm12b	100	76.296	ENSPNYG00000013589	-	100	76.238	Pundamilia_nyererei
ENSNBRG00000006727	prdm12b	100	78.906	ENSPNAG00000013396	PRDM12	100	77.344	Pygocentrus_nattereri
ENSNBRG00000006727	prdm12b	100	82.895	ENSPNAG00000024532	prdm12b	100	82.895	Pygocentrus_nattereri
ENSNBRG00000006727	prdm12b	93	79.714	ENSRNOG00000009218	Prdm12	99	75.328	Rattus_norvegicus
ENSNBRG00000006727	prdm12b	88	81.682	ENSRBIG00000042712	PRDM12	90	79.023	Rhinopithecus_bieti
ENSNBRG00000006727	prdm12b	89	81.899	ENSRROG00000043554	PRDM12	99	81.009	Rhinopithecus_roxellana
ENSNBRG00000006727	prdm12b	100	77.836	ENSSHAG00000015972	PRDM12	99	77.573	Sarcophilus_harrisii
ENSNBRG00000006727	prdm12b	100	88.432	ENSSMAG00000003754	prdm12b	100	88.689	Scophthalmus_maximus
ENSNBRG00000006727	prdm12b	100	81.088	ENSSDUG00000019071	-	100	81.088	Seriola_dumerili
ENSNBRG00000006727	prdm12b	100	92.126	ENSSDUG00000023498	prdm12b	100	92.388	Seriola_dumerili
ENSNBRG00000006727	prdm12b	100	77.454	ENSSLDG00000013562	-	100	76.923	Seriola_lalandi_dorsalis
ENSNBRG00000006727	prdm12b	100	92.126	ENSSLDG00000009557	prdm12b	100	92.126	Seriola_lalandi_dorsalis
ENSNBRG00000006727	prdm12b	100	78.515	ENSSPUG00000013424	PRDM12	99	78.249	Sphenodon_punctatus
ENSNBRG00000006727	prdm12b	100	93.386	ENSSPAG00000018824	prdm12b	100	94.444	Stegastes_partitus
ENSNBRG00000006727	prdm12b	100	74.160	ENSSPAG00000022420	-	100	74.160	Stegastes_partitus
ENSNBRG00000006727	prdm12b	93	80.000	ENSSSCG00000005703	PRDM12	99	75.526	Sus_scrofa
ENSNBRG00000006727	prdm12b	100	87.798	ENSTRUG00000018659	prdm12b	100	87.798	Takifugu_rubripes
ENSNBRG00000006727	prdm12b	100	77.513	ENSTRUG00000013239	-	100	77.249	Takifugu_rubripes
ENSNBRG00000006727	prdm12b	100	86.737	ENSTNIG00000009020	prdm12b	99	86.737	Tetraodon_nigroviridis
ENSNBRG00000006727	prdm12b	100	75.132	ENSTNIG00000005859	-	99	74.339	Tetraodon_nigroviridis
ENSNBRG00000006727	prdm12b	93	80.000	ENSUAMG00000009653	PRDM12	92	80.172	Ursus_americanus
ENSNBRG00000006727	prdm12b	92	80.172	ENSVVUG00000027662	PRDM12	79	80.172	Vulpes_vulpes
ENSNBRG00000006727	prdm12b	100	88.947	ENSXCOG00000002836	prdm12b	99	88.947	Xiphophorus_couchianus
ENSNBRG00000006727	prdm12b	100	77.114	ENSXMAG00000028012	-	100	76.866	Xiphophorus_maculatus
ENSNBRG00000006727	prdm12b	100	88.251	ENSXMAG00000005537	prdm12b	100	88.251	Xiphophorus_maculatus