EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000006860 (Gene tree)
Gene ID: 102786278
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain-helicase-DNA-binding protein 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 18330 bases
Position: chrJH422322.1:2943049-2961378
Accession: 102786278
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000009033	ResIII	PF04851.15	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000009292	-	4731	XM_006797387	ENSNBRP00000009033	1576 (aa)	XP_006797450	-
ENSNBRT00000009303	-	4698	-	ENSNBRP00000009044	1565 (aa)	-	-
ENSNBRT00000009275	-	4932	-	ENSNBRP00000009016	1643 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000006860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000006860's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000006860	chd1	89	68.133	ENSNBRG00000020591	chd2	87	65.365

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000006860	chd1	91	77.741	ENSG00000153922	CHD1	89	76.076	Homo_sapiens
ENSNBRG00000006860	chd1	69	95.086	ENSAPOG00000005764	chd1	94	95.086	Acanthochromis_polyacanthus
ENSNBRG00000006860	chd1	96	87.832	ENSAOCG00000023105	chd1	96	88.018	Amphiprion_ocellaris
ENSNBRG00000006860	chd1	96	89.004	ENSAPEG00000013544	chd1	96	89.191	Amphiprion_percula
ENSNBRG00000006860	chd1	93	89.051	ENSATEG00000010676	chd1	90	89.205	Anabas_testudineus
ENSNBRG00000006860	chd1	77	86.486	ENSAMXG00000010843	chd1	89	89.121	Astyanax_mexicanus
ENSNBRG00000006860	chd1	91	77.807	ENSCATG00000032035	CHD1	90	76.010	Cercocebus_atys
ENSNBRG00000006860	chd1	91	77.807	ENSCSAG00000015339	CHD1	88	76.010	Chlorocebus_sabaeus
ENSNBRG00000006860	chd1	56	78.953	ENSCPBG00000015831	CHD1	86	78.953	Chrysemys_picta_bellii
ENSNBRG00000006860	chd1	91	75.602	ENSCANG00000036916	CHD1	89	73.794	Colobus_angolensis_palliatus
ENSNBRG00000006860	chd1	91	77.206	ENSCGRG00001023943	Chd1	87	77.206	Cricetulus_griseus_chok1gshd
ENSNBRG00000006860	chd1	91	77.206	ENSCGRG00000008652	Chd1	87	77.206	Cricetulus_griseus_crigri
ENSNBRG00000006860	chd1	96	84.660	ENSCSEG00000009553	chd1	97	85.049	Cynoglossus_semilaevis
ENSNBRG00000006860	chd1	91	81.088	ENSEASG00005016110	CHD1	81	84.137	Equus_asinus_asinus
ENSNBRG00000006860	chd1	96	78.784	ENSELUG00000017677	chd1	98	78.921	Esox_lucius
ENSNBRG00000006860	chd1	75	91.032	ENSFHEG00000021164	chd1	86	91.032	Fundulus_heteroclitus
ENSNBRG00000006860	chd1	92	88.747	ENSGMOG00000001537	chd1	84	88.550	Gadus_morhua
ENSNBRG00000006860	chd1	97	74.183	ENSGALG00000031327	-	91	76.404	Gallus_gallus
ENSNBRG00000006860	chd1	81	94.792	ENSGAFG00000019880	chd1	79	92.934	Gambusia_affinis
ENSNBRG00000006860	chd1	91	74.616	ENSGGOG00000011463	CHD1	89	72.409	Gorilla_gorilla
ENSNBRG00000006860	chd1	96	87.273	ENSHCOG00000014222	chd1	95	87.857	Hippocampus_comes
ENSNBRG00000006860	chd1	95	81.310	ENSIPUG00000001369	chd1	96	81.142	Ictalurus_punctatus
ENSNBRG00000006860	chd1	56	81.736	ENSLAFG00000023183	CHD1	82	81.736	Loxodonta_africana
ENSNBRG00000006860	chd1	91	77.807	ENSMFAG00000031226	CHD1	89	76.010	Macaca_fascicularis
ENSNBRG00000006860	chd1	72	84.224	ENSMMUG00000014090	CHD1	82	81.679	Macaca_mulatta
ENSNBRG00000006860	chd1	91	77.807	ENSMNEG00000045073	CHD1	89	76.010	Macaca_nemestrina
ENSNBRG00000006860	chd1	91	73.262	ENSMLEG00000041096	CHD1	89	72.229	Mandrillus_leucophaeus
ENSNBRG00000006860	chd1	82	98.216	ENSMZEG00005010957	chd1	96	98.216	Maylandia_zebra
ENSNBRG00000006860	chd1	91	78.249	ENSMOCG00000019121	Chd1	86	78.659	Microtus_ochrogaster
ENSNBRG00000006860	chd1	75	93.529	ENSMALG00000013317	chd1	83	93.445	Monopterus_albus
ENSNBRG00000006860	chd1	91	77.473	MGP_CAROLIEiJ_G0021099	Chd1	87	77.273	Mus_caroli
ENSNBRG00000006860	chd1	91	77.473	ENSMUSG00000023852	Chd1	87	77.273	Mus_musculus
ENSNBRG00000006860	chd1	91	77.248	MGP_PahariEiJ_G0023414	Chd1	87	77.584	Mus_pahari
ENSNBRG00000006860	chd1	91	75.149	ENSNLEG00000014493	CHD1	89	73.565	Nomascus_leucogenys
ENSNBRG00000006860	chd1	93	77.228	ENSOANG00000004891	CHD1	100	77.614	Ornithorhynchus_anatinus
ENSNBRG00000006860	chd1	56	89.605	ENSORLG00015016725	chd1	83	89.605	Oryzias_latipes_hsok
ENSNBRG00000006860	chd1	91	76.447	ENSPPAG00000043367	CHD1	90	74.886	Pan_paniscus
ENSNBRG00000006860	chd1	91	77.607	ENSPTRG00000017103	CHD1	89	75.945	Pan_troglodytes
ENSNBRG00000006860	chd1	91	77.807	ENSPANG00000006387	CHD1	89	76.010	Papio_anubis
ENSNBRG00000006860	chd1	94	75.242	ENSPKIG00000024719	chd1	93	75.969	Paramormyrops_kingsleyae
ENSNBRG00000006860	chd1	76	91.376	ENSPMGG00000005785	chd1	91	91.376	Periophthalmus_magnuspinnatus
ENSNBRG00000006860	chd1	91	77.108	ENSPEMG00000015939	Chd1	86	76.620	Peromyscus_maniculatus_bairdii
ENSNBRG00000006860	chd1	93	85.904	ENSPREG00000004209	chd1	90	85.838	Poecilia_reticulata
ENSNBRG00000006860	chd1	72	84.035	ENSRNOG00000014434	Chd1	80	84.035	Rattus_norvegicus
ENSNBRG00000006860	chd1	93	77.609	ENSRBIG00000044325	CHD1	87	78.426	Rhinopithecus_bieti
ENSNBRG00000006860	chd1	93	76.432	ENSRROG00000001726	CHD1	87	77.206	Rhinopithecus_roxellana
ENSNBRG00000006860	chd1	74	87.151	ENSSFOG00015007161	chd1	91	84.846	Scleropages_formosus
ENSNBRG00000006860	chd1	75	94.266	ENSSDUG00000018314	chd1	83	94.266	Seriola_dumerili
ENSNBRG00000006860	chd1	58	92.167	ENSSLDG00000017244	chd1	93	92.167	Seriola_lalandi_dorsalis
ENSNBRG00000006860	chd1	74	95.819	ENSSPAG00000007024	chd1	84	95.359	Stegastes_partitus
ENSNBRG00000006860	chd1	80	80.435	ENSSSCG00000014177	CHD1	87	80.623	Sus_scrofa
ENSNBRG00000006860	chd1	93	84.973	ENSTRUG00000010282	chd1	89	85.439	Takifugu_rubripes
ENSNBRG00000006860	chd1	70	90.710	ENSTNIG00000007101	chd1	85	90.619	Tetraodon_nigroviridis
ENSNBRG00000006860	chd1	98	80.750	ENSXCOG00000017184	chd1	91	83.970	Xiphophorus_couchianus
ENSNBRG00000006860	chd1	75	91.201	ENSXMAG00000014538	chd1	87	91.201	Xiphophorus_maculatus