EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000008134 (Gene tree)
Gene ID: 102795795
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 5356 bases
Position: chrJH422341.1:1011016-1016371
Accession: 102795795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000010466	RRM_1	PF00076.22	1.2e-33	1	2
ENSNBRP00000010466	RRM_1	PF00076.22	1.2e-33	2	2
ENSNBRP00000010449	RRM_1	PF00076.22	1.5e-33	1	2
ENSNBRP00000010449	RRM_1	PF00076.22	1.5e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000010758	-	738	-	ENSNBRP00000010466	245 (aa)	-	-
ENSNBRT00000010741	-	3556	XM_006800031	ENSNBRP00000010449	261 (aa)	XP_006800094	UPI0003EBEDB0

Gene Model

Click here to download ENSNBRG00000008134's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000008134's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000008134	-	76	37.788	ENSNBRG00000000771	srsf5a	72	36.937
ENSNBRG00000008134	-	64	51.429	ENSNBRG00000001285	srsf5b	58	49.143
ENSNBRG00000008134	-	76	86.842	ENSNBRG00000019981	-	78	86.842
ENSNBRG00000008134	-	95	79.583	ENSNBRG00000008041	srsf1b	78	82.258
ENSNBRG00000008134	-	88	38.462	ENSNBRG00000001846	-	67	37.805
ENSNBRG00000008134	-	65	42.857	ENSNBRG00000014709	-	52	44.186
ENSNBRG00000008134	-	70	72.989	ENSNBRG00000003888	srsf9	72	71.839

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000008134	-	73	94.764	ENSACIG00000002623	-	96	94.764	Amphilophus_citrinellus
ENSNBRG00000008134	-	76	86.842	ENSACLG00000005676	-	78	86.842	Astatotilapia_calliptera
ENSNBRG00000008134	-	100	99.234	ENSACLG00000021693	-	100	99.234	Astatotilapia_calliptera
ENSNBRG00000008134	-	74	62.371	WBGene00004700	rsp-3	75	64.615	Caenorhabditis_elegans
ENSNBRG00000008134	-	71	57.062	ENSCING00000000257	-	75	65.873	Ciona_intestinalis
ENSNBRG00000008134	-	71	74.302	ENSCING00000007375	-	76	73.184	Ciona_intestinalis
ENSNBRG00000008134	-	71	73.743	ENSCSAVG00000006093	-	91	71.508	Ciona_savignyi
ENSNBRG00000008134	-	67	58.580	ENSCSAVG00000003567	-	76	62.698	Ciona_savignyi
ENSNBRG00000008134	-	73	66.842	FBgn0283477	SF2	73	67.368	Drosophila_melanogaster
ENSNBRG00000008134	-	95	75.105	ENSEBUG00000009582	-	84	78.125	Eptatretus_burgeri
ENSNBRG00000008134	-	78	92.611	ENSFHEG00000017425	-	98	92.147	Fundulus_heteroclitus
ENSNBRG00000008134	-	73	84.817	ENSGMOG00000010606	-	97	86.188	Gadus_morhua
ENSNBRG00000008134	-	77	85.572	ENSGAFG00000012721	-	78	86.387	Gambusia_affinis
ENSNBRG00000008134	-	79	93.237	ENSGAFG00000000609	-	93	93.220	Gambusia_affinis
ENSNBRG00000008134	-	72	85.106	ENSGACG00000011094	-	96	85.955	Gasterosteus_aculeatus
ENSNBRG00000008134	-	100	99.617	ENSHBUG00000015576	-	100	99.617	Haplochromis_burtoni
ENSNBRG00000008134	-	51	61.364	ENSHBUG00000015600	-	92	69.828	Haplochromis_burtoni
ENSNBRG00000008134	-	76	87.234	ENSHCOG00000008016	-	77	87.234	Hippocampus_comes
ENSNBRG00000008134	-	95	82.377	ENSMFAG00000034223	-	65	85.052	Macaca_fascicularis
ENSNBRG00000008134	-	100	98.851	ENSMZEG00005019071	-	100	98.851	Maylandia_zebra
ENSNBRG00000008134	-	76	86.842	ENSMZEG00005007947	-	78	86.842	Maylandia_zebra
ENSNBRG00000008134	-	78	87.745	ENSMMOG00000018849	-	79	87.745	Mola_mola
ENSNBRG00000008134	-	64	69.375	ENSOPRG00000004745	-	96	67.500	Ochotona_princeps
ENSNBRG00000008134	-	96	98.810	ENSONIG00000004857	-	99	98.810	Oreochromis_niloticus
ENSNBRG00000008134	-	55	86.957	ENSOANG00000007320	-	53	96.512	Ornithorhynchus_anatinus
ENSNBRG00000008134	-	67	54.819	ENSOCUG00000026856	-	96	56.627	Oryctolagus_cuniculus
ENSNBRG00000008134	-	100	93.870	ENSORLG00000005314	-	99	93.870	Oryzias_latipes
ENSNBRG00000008134	-	100	93.870	ENSORLG00015015497	-	99	93.870	Oryzias_latipes_hsok
ENSNBRG00000008134	-	100	95.785	ENSOMEG00000017711	-	98	95.785	Oryzias_melastigma
ENSNBRG00000008134	-	72	85.106	ENSPLAG00000019613	-	71	85.955	Poecilia_latipinna
ENSNBRG00000008134	-	76	85.052	ENSPLAG00000019553	-	92	84.066	Poecilia_latipinna
ENSNBRG00000008134	-	79	92.271	ENSPREG00000016792	-	93	92.373	Poecilia_reticulata
ENSNBRG00000008134	-	76	86.842	ENSPNYG00000017115	-	78	86.842	Pundamilia_nyererei
ENSNBRG00000008134	-	100	99.234	ENSPNYG00000020651	-	100	99.234	Pundamilia_nyererei
ENSNBRG00000008134	-	82	88.785	ENSSFOG00015004989	-	71	89.119	Scleropages_formosus
ENSNBRG00000008134	-	77	92.344	ENSSDUG00000003887	-	92	91.701	Seriola_dumerili
ENSNBRG00000008134	-	77	85.864	ENSTRUG00000017058	-	80	86.387	Takifugu_rubripes
ENSNBRG00000008134	-	77	82.812	ENSTNIG00000009993	-	81	83.333	Tetraodon_nigroviridis
ENSNBRG00000008134	-	76	85.052	ENSXCOG00000009643	-	78	86.096	Xiphophorus_couchianus
ENSNBRG00000008134	-	79	92.754	ENSXCOG00000017888	-	93	92.797	Xiphophorus_couchianus
ENSNBRG00000008134	-	79	92.754	ENSXMAG00000010797	-	93	92.797	Xiphophorus_maculatus