EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000008747 (Gene tree)
Gene ID: 102796892
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA phosphodiesterase-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 4503 bases
Position: chrJH422322.1:4252266-4256768
Accession: 102796892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000011299	HVSL	PF09749.9	2.8e-56	1	1
ENSNBRP00000011286	HVSL	PF09749.9	1.1e-51	1	2
ENSNBRP00000011286	HVSL	PF09749.9	1.1e-51	2	2
ENSNBRP00000011278	HVSL	PF09749.9	1.2e-50	1	1
ENSNBRP00000011309	HVSL	PF09749.9	2.4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000011620	-	609	-	ENSNBRP00000011299	202 (aa)	-	-
ENSNBRT00000011599	-	822	-	ENSNBRP00000011278	273 (aa)	-	-
ENSNBRT00000011606	-	693	XM_006797427	ENSNBRP00000011286	230 (aa)	XP_006797490	-
ENSNBRT00000011630	-	474	-	ENSNBRP00000011309	157 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000008747's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000008747's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000008747	usb1	99	53.465	ENSG00000103005	USB1	100	52.804	Homo_sapiens
ENSNBRG00000008747	usb1	100	77.723	ENSAPOG00000011942	usb1	100	69.231	Acanthochromis_polyacanthus
ENSNBRG00000008747	usb1	99	53.271	ENSAMEG00000017205	USB1	87	48.498	Ailuropoda_melanoleuca
ENSNBRG00000008747	usb1	100	83.178	ENSACIG00000012234	usb1	86	76.395	Amphilophus_citrinellus
ENSNBRG00000008747	usb1	99	80.282	ENSAOCG00000014831	usb1	99	69.965	Amphiprion_ocellaris
ENSNBRG00000008747	usb1	99	79.343	ENSAPEG00000000296	usb1	99	69.258	Amphiprion_percula
ENSNBRG00000008747	usb1	99	77.934	ENSATEG00000009348	usb1	99	71.986	Anabas_testudineus
ENSNBRG00000008747	usb1	95	56.863	ENSAPLG00000002756	USB1	99	52.000	Anas_platyrhynchos
ENSNBRG00000008747	usb1	98	51.415	ENSACAG00000015481	USB1	99	46.957	Anolis_carolinensis
ENSNBRG00000008747	usb1	99	52.970	ENSANAG00000035640	USB1	94	47.521	Aotus_nancymaae
ENSNBRG00000008747	usb1	100	92.523	ENSACLG00000020586	usb1	100	84.698	Astatotilapia_calliptera
ENSNBRG00000008747	usb1	99	60.563	ENSAMXG00000040146	usb1	83	52.964	Astyanax_mexicanus
ENSNBRG00000008747	usb1	99	52.804	ENSBTAG00000015758	USB1	92	48.361	Bos_taurus
ENSNBRG00000008747	usb1	99	52.804	ENSCJAG00000011733	USB1	94	48.571	Callithrix_jacchus
ENSNBRG00000008747	usb1	99	52.113	ENSCAFG00000008556	USB1	62	47.414	Canis_familiaris
ENSNBRG00000008747	usb1	99	52.113	ENSCAFG00020009263	USB1	86	47.826	Canis_lupus_dingo
ENSNBRG00000008747	usb1	99	52.804	ENSCHIG00000024290	USB1	91	50.000	Capra_hircus
ENSNBRG00000008747	usb1	99	50.826	ENSTSYG00000006997	USB1	87	51.163	Carlito_syrichta
ENSNBRG00000008747	usb1	99	43.458	ENSCAPG00000009057	USB1	99	46.829	Cavia_aperea
ENSNBRG00000008747	usb1	99	53.738	ENSCPOG00000014325	USB1	87	48.498	Cavia_porcellus
ENSNBRG00000008747	usb1	99	53.465	ENSCCAG00000022132	USB1	94	47.107	Cebus_capucinus
ENSNBRG00000008747	usb1	99	53.960	ENSCATG00000032174	USB1	87	52.093	Cercocebus_atys
ENSNBRG00000008747	usb1	79	52.601	ENSCLAG00000007363	USB1	98	52.601	Chinchilla_lanigera
ENSNBRG00000008747	usb1	99	52.804	ENSCSAG00000004783	USB1	88	48.069	Chlorocebus_sabaeus
ENSNBRG00000008747	usb1	99	54.930	ENSCPBG00000026943	USB1	90	48.207	Chrysemys_picta_bellii
ENSNBRG00000008747	usb1	95	30.233	ENSCING00000011490	-	81	30.233	Ciona_intestinalis
ENSNBRG00000008747	usb1	94	31.579	ENSCSAVG00000000894	-	75	31.579	Ciona_savignyi
ENSNBRG00000008747	usb1	99	53.465	ENSCANG00000037135	USB1	94	47.521	Colobus_angolensis_palliatus
ENSNBRG00000008747	usb1	99	52.804	ENSCGRG00001011243	USB1	91	47.325	Cricetulus_griseus_chok1gshd
ENSNBRG00000008747	usb1	99	52.804	ENSCGRG00000013252	USB1	91	47.325	Cricetulus_griseus_crigri
ENSNBRG00000008747	usb1	99	68.545	ENSCSEG00000013881	usb1	88	64.050	Cynoglossus_semilaevis
ENSNBRG00000008747	usb1	99	66.820	ENSCVAG00000009252	usb1	98	62.445	Cyprinodon_variegatus
ENSNBRG00000008747	usb1	99	62.150	ENSDARG00000003841	usb1	87	57.613	Danio_rerio
ENSNBRG00000008747	usb1	99	53.271	ENSDORG00000001888	Usb1	88	50.215	Dipodomys_ordii
ENSNBRG00000008747	usb1	99	38.889	FBgn0037713	CG16790	89	33.475	Drosophila_melanogaster
ENSNBRG00000008747	usb1	99	43.458	ENSETEG00000019682	USB1	94	37.945	Echinops_telfairi
ENSNBRG00000008747	usb1	99	42.723	ENSEBUG00000005889	usb1	89	40.000	Eptatretus_burgeri
ENSNBRG00000008747	usb1	99	52.336	ENSEASG00005005484	USB1	88	47.639	Equus_asinus_asinus
ENSNBRG00000008747	usb1	99	52.113	ENSECAG00000019493	USB1	80	47.845	Equus_caballus
ENSNBRG00000008747	usb1	79	50.289	ENSEEUG00000000154	USB1	65	50.289	Erinaceus_europaeus
ENSNBRG00000008747	usb1	99	66.355	ENSELUG00000010974	usb1	92	62.302	Esox_lucius
ENSNBRG00000008747	usb1	99	52.475	ENSFCAG00000002693	USB1	86	51.628	Felis_catus
ENSNBRG00000008747	usb1	98	52.607	ENSFALG00000006876	USB1	95	44.706	Ficedula_albicollis
ENSNBRG00000008747	usb1	99	52.804	ENSFDAG00000010052	USB1	87	48.918	Fukomys_damarensis
ENSNBRG00000008747	usb1	78	67.456	ENSFHEG00000012334	usb1	88	59.459	Fundulus_heteroclitus
ENSNBRG00000008747	usb1	100	68.692	ENSGMOG00000004228	usb1	96	68.692	Gadus_morhua
ENSNBRG00000008747	usb1	98	53.810	ENSGALG00000035604	USB1	88	51.111	Gallus_gallus
ENSNBRG00000008747	usb1	100	72.093	ENSGAFG00000021890	usb1	94	64.368	Gambusia_affinis
ENSNBRG00000008747	usb1	99	72.770	ENSGACG00000003257	usb1	90	68.651	Gasterosteus_aculeatus
ENSNBRG00000008747	usb1	99	53.991	ENSGAGG00000022572	USB1	90	49.593	Gopherus_agassizii
ENSNBRG00000008747	usb1	99	53.465	ENSGGOG00000017147	USB1	94	47.951	Gorilla_gorilla
ENSNBRG00000008747	usb1	100	92.523	ENSHBUG00000009823	usb1	100	89.643	Haplochromis_burtoni
ENSNBRG00000008747	usb1	99	52.582	ENSHGLG00000016078	USB1	85	47.845	Heterocephalus_glaber_female
ENSNBRG00000008747	usb1	99	52.582	ENSHGLG00100005562	USB1	85	47.845	Heterocephalus_glaber_male
ENSNBRG00000008747	usb1	100	70.561	ENSHCOG00000015633	usb1	100	63.566	Hippocampus_comes
ENSNBRG00000008747	usb1	99	61.682	ENSIPUG00000008601	usb1	82	54.894	Ictalurus_punctatus
ENSNBRG00000008747	usb1	99	52.804	ENSSTOG00000007548	USB1	85	47.639	Ictidomys_tridecemlineatus
ENSNBRG00000008747	usb1	99	52.804	ENSJJAG00000021859	Usb1	87	48.276	Jaculus_jaculus
ENSNBRG00000008747	usb1	99	73.239	ENSKMAG00000007200	usb1	99	64.539	Kryptolebias_marmoratus
ENSNBRG00000008747	usb1	97	69.565	ENSLBEG00000008452	usb1	79	63.636	Labrus_bergylta
ENSNBRG00000008747	usb1	77	58.580	ENSLACG00000000105	USB1	75	48.624	Latimeria_chalumnae
ENSNBRG00000008747	usb1	99	57.746	ENSLOCG00000000465	usb1	90	51.172	Lepisosteus_oculatus
ENSNBRG00000008747	usb1	99	41.364	ENSLAFG00000002267	USB1	86	37.975	Loxodonta_africana
ENSNBRG00000008747	usb1	99	53.960	ENSMFAG00000003926	USB1	87	52.093	Macaca_fascicularis
ENSNBRG00000008747	usb1	99	53.960	ENSMMUG00000022669	USB1	87	52.093	Macaca_mulatta
ENSNBRG00000008747	usb1	99	53.465	ENSMNEG00000042487	USB1	87	51.628	Macaca_nemestrina
ENSNBRG00000008747	usb1	99	53.960	ENSMLEG00000028756	USB1	87	52.093	Mandrillus_leucophaeus
ENSNBRG00000008747	usb1	99	75.587	ENSMAMG00000015092	usb1	99	65.950	Mastacembelus_armatus
ENSNBRG00000008747	usb1	100	92.523	ENSMZEG00005010008	usb1	100	88.571	Maylandia_zebra
ENSNBRG00000008747	usb1	99	53.271	ENSMAUG00000007832	Usb1	87	48.707	Mesocricetus_auratus
ENSNBRG00000008747	usb1	99	53.960	ENSMICG00000004900	USB1	87	52.093	Microcebus_murinus
ENSNBRG00000008747	usb1	99	53.738	ENSMOCG00000022647	Usb1	87	49.138	Microtus_ochrogaster
ENSNBRG00000008747	usb1	99	73.709	ENSMMOG00000000490	usb1	87	70.354	Mola_mola
ENSNBRG00000008747	usb1	99	49.533	ENSMODG00000014067	USB1	94	44.223	Monodelphis_domestica
ENSNBRG00000008747	usb1	100	73.364	ENSMALG00000005930	usb1	100	69.258	Monopterus_albus
ENSNBRG00000008747	usb1	99	53.738	MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	Mus_caroli
ENSNBRG00000008747	usb1	99	53.738	ENSMUSG00000031792	Usb1	99	48.214	Mus_musculus
ENSNBRG00000008747	usb1	99	54.206	MGP_PahariEiJ_G0023019	Usb1	100	50.427	Mus_pahari
ENSNBRG00000008747	usb1	99	53.738	MGP_SPRETEiJ_G0032540	Usb1	87	49.569	Mus_spretus
ENSNBRG00000008747	usb1	99	51.402	ENSMPUG00000004684	USB1	83	46.781	Mustela_putorius_furo
ENSNBRG00000008747	usb1	99	52.804	ENSMLUG00000007400	USB1	100	48.485	Myotis_lucifugus
ENSNBRG00000008747	usb1	99	54.206	ENSNGAG00000009703	Usb1	90	48.148	Nannospalax_galili
ENSNBRG00000008747	usb1	90	54.645	ENSNLEG00000003340	USB1	91	48.430	Nomascus_leucogenys
ENSNBRG00000008747	usb1	66	49.038	ENSMEUG00000003328	-	91	40.426	Notamacropus_eugenii
ENSNBRG00000008747	usb1	76	47.500	ENSOPRG00000011803	USB1	50	49.138	Ochotona_princeps
ENSNBRG00000008747	usb1	99	53.991	ENSODEG00000016214	USB1	85	50.885	Octodon_degus
ENSNBRG00000008747	usb1	99	91.549	ENSONIG00000011063	usb1	100	83.513	Oreochromis_niloticus
ENSNBRG00000008747	usb1	99	52.558	ENSOANG00000012118	USB1	94	49.333	Ornithorhynchus_anatinus
ENSNBRG00000008747	usb1	100	74.299	ENSORLG00000012479	usb1	95	65.251	Oryzias_latipes
ENSNBRG00000008747	usb1	100	73.832	ENSORLG00020018671	usb1	96	64.865	Oryzias_latipes_hni
ENSNBRG00000008747	usb1	100	74.299	ENSORLG00015009679	usb1	96	65.251	Oryzias_latipes_hsok
ENSNBRG00000008747	usb1	100	73.832	ENSOMEG00000012930	usb1	100	65.000	Oryzias_melastigma
ENSNBRG00000008747	usb1	99	52.970	ENSOGAG00000003273	USB1	87	51.628	Otolemur_garnettii
ENSNBRG00000008747	usb1	99	52.336	ENSOARG00000001107	USB1	93	47.951	Ovis_aries
ENSNBRG00000008747	usb1	99	52.970	ENSPPAG00000042137	USB1	94	47.521	Pan_paniscus
ENSNBRG00000008747	usb1	99	51.980	ENSPPRG00000024797	USB1	86	51.163	Panthera_pardus
ENSNBRG00000008747	usb1	99	51.485	ENSPTIG00000007506	USB1	86	50.698	Panthera_tigris_altaica
ENSNBRG00000008747	usb1	99	53.465	ENSPTRG00000008172	USB1	100	52.804	Pan_troglodytes
ENSNBRG00000008747	usb1	99	53.960	ENSPANG00000025138	USB1	87	52.093	Papio_anubis
ENSNBRG00000008747	usb1	99	61.502	ENSPKIG00000015109	usb1	83	55.466	Paramormyrops_kingsleyae
ENSNBRG00000008747	usb1	99	42.925	ENSPSIG00000004305	USB1	100	44.595	Pelodiscus_sinensis
ENSNBRG00000008747	usb1	99	65.094	ENSPMGG00000017725	usb1	82	65.094	Periophthalmus_magnuspinnatus
ENSNBRG00000008747	usb1	99	53.271	ENSPEMG00000016183	Usb1	89	47.325	Peromyscus_maniculatus_bairdii
ENSNBRG00000008747	usb1	99	47.907	ENSPMAG00000000462	usb1	95	45.175	Petromyzon_marinus
ENSNBRG00000008747	usb1	100	73.023	ENSPFOG00000011130	usb1	91	65.613	Poecilia_formosa
ENSNBRG00000008747	usb1	100	73.023	ENSPLAG00000009820	usb1	91	65.613	Poecilia_latipinna
ENSNBRG00000008747	usb1	100	73.023	ENSPMEG00000006402	usb1	91	66.008	Poecilia_mexicana
ENSNBRG00000008747	usb1	84	71.429	ENSPREG00000001047	usb1	89	65.000	Poecilia_reticulata
ENSNBRG00000008747	usb1	93	49.254	ENSPPYG00000007401	USB1	94	43.750	Pongo_abelii
ENSNBRG00000008747	usb1	99	52.970	ENSPCOG00000022612	USB1	87	51.163	Propithecus_coquereli
ENSNBRG00000008747	usb1	99	50.935	ENSPVAG00000004613	USB1	87	47.556	Pteropus_vampyrus
ENSNBRG00000008747	usb1	100	93.069	ENSPNYG00000022262	usb1	100	90.476	Pundamilia_nyererei
ENSNBRG00000008747	usb1	99	61.215	ENSPNAG00000011736	usb1	83	54.251	Pygocentrus_nattereri
ENSNBRG00000008747	usb1	99	54.206	ENSRNOG00000013216	Usb1	87	48.918	Rattus_norvegicus
ENSNBRG00000008747	usb1	99	53.960	ENSRBIG00000044466	USB1	100	52.804	Rhinopithecus_bieti
ENSNBRG00000008747	usb1	99	53.960	ENSRROG00000029211	USB1	87	52.093	Rhinopithecus_roxellana
ENSNBRG00000008747	usb1	99	53.960	ENSSBOG00000029362	USB1	87	51.869	Saimiri_boliviensis_boliviensis
ENSNBRG00000008747	usb1	99	50.000	ENSSHAG00000006993	USB1	90	47.137	Sarcophilus_harrisii
ENSNBRG00000008747	usb1	99	64.151	ENSSFOG00015023663	usb1	80	56.371	Scleropages_formosus
ENSNBRG00000008747	usb1	100	71.053	ENSSMAG00000015834	usb1	100	63.851	Scophthalmus_maximus
ENSNBRG00000008747	usb1	100	75.701	ENSSDUG00000002949	usb1	84	71.930	Seriola_dumerili
ENSNBRG00000008747	usb1	100	76.636	ENSSLDG00000014174	usb1	100	69.825	Seriola_lalandi_dorsalis
ENSNBRG00000008747	usb1	99	52.804	ENSSPUG00000006741	USB1	100	52.804	Sphenodon_punctatus
ENSNBRG00000008747	usb1	99	79.343	ENSSPAG00000007484	usb1	99	67.944	Stegastes_partitus
ENSNBRG00000008747	usb1	99	52.336	ENSSSCG00000002807	USB1	88	48.319	Sus_scrofa
ENSNBRG00000008747	usb1	98	52.607	ENSTGUG00000004792	USB1	87	48.649	Taeniopygia_guttata
ENSNBRG00000008747	usb1	99	70.892	ENSTRUG00000021069	usb1	92	66.400	Takifugu_rubripes
ENSNBRG00000008747	usb1	99	61.972	ENSTNIG00000000626	usb1	98	55.212	Tetraodon_nigroviridis
ENSNBRG00000008747	usb1	99	37.383	ENSTBEG00000001507	USB1	100	35.897	Tupaia_belangeri
ENSNBRG00000008747	usb1	99	53.271	ENSUAMG00000016823	USB1	87	48.498	Ursus_americanus
ENSNBRG00000008747	usb1	99	53.271	ENSUMAG00000021369	USB1	100	53.271	Ursus_maritimus
ENSNBRG00000008747	usb1	99	52.113	ENSVVUG00000023700	USB1	89	47.826	Vulpes_vulpes
ENSNBRG00000008747	usb1	99	53.738	ENSXETG00000013795	usb1	86	53.738	Xenopus_tropicalis
ENSNBRG00000008747	usb1	100	72.093	ENSXMAG00000024687	usb1	75	66.008	Xiphophorus_maculatus