EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000009964 (Gene tree)
Gene ID: -
Gene Symbol: LSM5 (1 of many)
Alias: YER146W
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 764 bases
Position: chrJH424250.1:2890-3653
Accession: 17162
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000012787	LSM	PF01423.22	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000013150	LSM5 (1 of many)-201	144	-	ENSNBRP00000012787	47 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000009964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000009964's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000009964	LSM5	98	91.304	ENSG00000106355	LSM5	72	91.304	Homo_sapiens
ENSNBRG00000009964	LSM5	96	91.111	ENSAPOG00000020779	LSM5	53	91.111	Acanthochromis_polyacanthus
ENSNBRG00000009964	LSM5	96	91.111	ENSAPOG00000011743	LSM5	51	91.111	Acanthochromis_polyacanthus
ENSNBRG00000009964	LSM5	96	88.889	ENSACAG00000009530	LSM5	75	88.889	Anolis_carolinensis
ENSNBRG00000009964	LSM5	98	93.478	ENSANAG00000034409	-	72	93.478	Aotus_nancymaae
ENSNBRG00000009964	LSM5	98	89.130	ENSANAG00000024192	-	69	89.130	Aotus_nancymaae
ENSNBRG00000009964	LSM5	98	95.652	ENSACLG00000012891	lsm5	52	95.652	Astatotilapia_calliptera
ENSNBRG00000009964	LSM5	94	79.545	ENSBTAG00000052014	-	58	79.545	Bos_taurus
ENSNBRG00000009964	LSM5	98	91.304	ENSBTAG00000002332	LSM5	51	91.304	Bos_taurus
ENSNBRG00000009964	LSM5	96	73.333	ENSCJAG00000005678	-	51	73.333	Callithrix_jacchus
ENSNBRG00000009964	LSM5	98	91.304	ENSCJAG00000047379	LSM5	72	91.304	Callithrix_jacchus
ENSNBRG00000009964	LSM5	98	91.304	ENSCAFG00000030781	-	53	91.304	Canis_familiaris
ENSNBRG00000009964	LSM5	89	71.429	ENSCHIG00000021428	-	51	66.667	Capra_hircus
ENSNBRG00000009964	LSM5	96	88.889	ENSCHIG00000004079	-	50	88.889	Capra_hircus
ENSNBRG00000009964	LSM5	98	91.304	ENSTSYG00000006449	-	72	91.304	Carlito_syrichta
ENSNBRG00000009964	LSM5	96	82.222	ENSTSYG00000036637	-	62	82.222	Carlito_syrichta
ENSNBRG00000009964	LSM5	96	88.889	ENSCPOG00000036386	LSM5	73	93.023	Cavia_porcellus
ENSNBRG00000009964	LSM5	98	91.304	ENSCCAG00000037808	-	72	91.304	Cebus_capucinus
ENSNBRG00000009964	LSM5	96	86.667	ENSCATG00000014790	-	78	86.667	Cercocebus_atys
ENSNBRG00000009964	LSM5	98	91.304	ENSCATG00000040218	LSM5	72	91.304	Cercocebus_atys
ENSNBRG00000009964	LSM5	96	88.889	ENSCLAG00000000202	LSM5	73	93.023	Chinchilla_lanigera
ENSNBRG00000009964	LSM5	96	88.889	ENSCHOG00000005335	LSM5	59	88.889	Choloepus_hoffmanni
ENSNBRG00000009964	LSM5	96	82.222	ENSCING00000020625	-	51	82.222	Ciona_intestinalis
ENSNBRG00000009964	LSM5	94	84.091	ENSCSAVG00000001439	-	50	84.091	Ciona_savignyi
ENSNBRG00000009964	LSM5	98	91.304	ENSCANG00000039909	LSM5	72	91.304	Colobus_angolensis_palliatus
ENSNBRG00000009964	LSM5	96	88.889	ENSCGRG00001015461	Lsm5	73	93.023	Cricetulus_griseus_chok1gshd
ENSNBRG00000009964	LSM5	98	89.130	ENSDARG00000071573	lsm5	51	89.130	Danio_rerio
ENSNBRG00000009964	LSM5	96	77.778	ENSDNOG00000049495	-	50	77.778	Dasypus_novemcinctus
ENSNBRG00000009964	LSM5	96	88.889	ENSDNOG00000034958	LSM5	51	88.889	Dasypus_novemcinctus
ENSNBRG00000009964	LSM5	98	80.435	ENSETEG00000010651	-	57	80.435	Echinops_telfairi
ENSNBRG00000009964	LSM5	94	79.545	ENSETEG00000001469	-	56	79.545	Echinops_telfairi
ENSNBRG00000009964	LSM5	68	87.500	ENSETEG00000016074	-	50	87.500	Echinops_telfairi
ENSNBRG00000009964	LSM5	98	87.755	ENSEBUG00000008540	lsm5	54	87.755	Eptatretus_burgeri
ENSNBRG00000009964	LSM5	98	91.304	ENSECAG00000018445	LSM5	56	91.304	Equus_caballus
ENSNBRG00000009964	LSM5	98	91.304	ENSFCAG00000000230	LSM5	72	91.304	Felis_catus
ENSNBRG00000009964	LSM5	96	88.889	ENSFDAG00000008767	LSM5	73	93.023	Fukomys_damarensis
ENSNBRG00000009964	LSM5	85	72.500	ENSFDAG00000008685	-	55	72.500	Fukomys_damarensis
ENSNBRG00000009964	LSM5	100	79.167	ENSFHEG00000004011	lsm5	55	79.167	Fundulus_heteroclitus
ENSNBRG00000009964	LSM5	98	91.304	ENSGGOG00000043469	LSM5	72	91.304	Gorilla_gorilla
ENSNBRG00000009964	LSM5	98	95.652	ENSHBUG00000013773	lsm5	52	95.652	Haplochromis_burtoni
ENSNBRG00000009964	LSM5	96	88.889	ENSHGLG00000011765	LSM5	73	93.023	Heterocephalus_glaber_female
ENSNBRG00000009964	LSM5	96	82.222	ENSHGLG00100015610	LSM5	72	86.047	Heterocephalus_glaber_male
ENSNBRG00000009964	LSM5	96	93.333	ENSIPUG00000021095	LSM5	50	93.333	Ictalurus_punctatus
ENSNBRG00000009964	LSM5	96	70.213	ENSSTOG00000033886	-	53	70.213	Ictidomys_tridecemlineatus
ENSNBRG00000009964	LSM5	96	88.889	ENSSTOG00000012662	LSM5	73	93.023	Ictidomys_tridecemlineatus
ENSNBRG00000009964	LSM5	96	84.444	ENSJJAG00000004475	-	57	84.444	Jaculus_jaculus
ENSNBRG00000009964	LSM5	96	97.778	ENSLBEG00000017379	lsm5	74	97.778	Labrus_bergylta
ENSNBRG00000009964	LSM5	98	91.304	ENSMFAG00000038508	LSM5	72	91.304	Macaca_fascicularis
ENSNBRG00000009964	LSM5	96	86.667	ENSMFAG00000031187	-	76	86.667	Macaca_fascicularis
ENSNBRG00000009964	LSM5	98	91.304	ENSMMUG00000045129	-	72	91.304	Macaca_mulatta
ENSNBRG00000009964	LSM5	96	86.667	ENSMMUG00000039822	-	55	86.667	Macaca_mulatta
ENSNBRG00000009964	LSM5	98	91.304	ENSMNEG00000015331	LSM5	70	91.304	Macaca_nemestrina
ENSNBRG00000009964	LSM5	98	91.304	ENSMLEG00000024945	LSM5	72	91.304	Mandrillus_leucophaeus
ENSNBRG00000009964	LSM5	96	86.667	ENSMLEG00000034037	-	75	86.667	Mandrillus_leucophaeus
ENSNBRG00000009964	LSM5	98	95.652	ENSMZEG00005019554	lsm5	52	95.652	Maylandia_zebra
ENSNBRG00000009964	LSM5	96	88.889	ENSMAUG00000012222	Lsm5	73	93.023	Mesocricetus_auratus
ENSNBRG00000009964	LSM5	98	91.304	ENSMICG00000005353	LSM5	72	91.304	Microcebus_murinus
ENSNBRG00000009964	LSM5	96	88.889	ENSMOCG00000012018	Lsm5	73	93.023	Microtus_ochrogaster
ENSNBRG00000009964	LSM5	96	88.889	MGP_CAROLIEiJ_G0028421	Lsm5	100	92.857	Mus_caroli
ENSNBRG00000009964	LSM5	96	88.889	ENSMUSG00000091625	Lsm5	100	92.857	Mus_musculus
ENSNBRG00000009964	LSM5	96	88.889	MGP_PahariEiJ_G0022171	Lsm5	100	92.857	Mus_pahari
ENSNBRG00000009964	LSM5	96	88.889	MGP_SPRETEiJ_G0029423	Lsm5	100	92.857	Mus_spretus
ENSNBRG00000009964	LSM5	94	56.818	ENSNGAG00000022569	-	51	56.818	Nannospalax_galili
ENSNBRG00000009964	LSM5	96	88.889	ENSNGAG00000024142	Lsm5	73	93.023	Nannospalax_galili
ENSNBRG00000009964	LSM5	98	91.304	ENSNLEG00000015268	LSM5	72	91.304	Nomascus_leucogenys
ENSNBRG00000009964	LSM5	96	91.111	ENSORLG00020003019	lsm5	50	72.917	Oryzias_latipes_hni
ENSNBRG00000009964	LSM5	98	91.304	ENSPPAG00000003697	-	72	91.304	Pan_paniscus
ENSNBRG00000009964	LSM5	98	91.304	ENSPPRG00000002550	LSM5	72	91.304	Panthera_pardus
ENSNBRG00000009964	LSM5	98	91.304	ENSPTIG00000015604	LSM5	72	91.304	Panthera_tigris_altaica
ENSNBRG00000009964	LSM5	98	91.304	ENSPTRG00000019057	LSM5	53	91.304	Pan_troglodytes
ENSNBRG00000009964	LSM5	98	91.304	ENSPTRG00000049488	-	53	91.304	Pan_troglodytes
ENSNBRG00000009964	LSM5	96	86.667	ENSPANG00000032538	-	55	86.667	Papio_anubis
ENSNBRG00000009964	LSM5	98	91.304	ENSPANG00000032179	-	72	91.304	Papio_anubis
ENSNBRG00000009964	LSM5	96	64.444	ENSPEMG00000022375	-	55	64.444	Peromyscus_maniculatus_bairdii
ENSNBRG00000009964	LSM5	91	93.023	ENSPEMG00000019994	-	73	93.023	Peromyscus_maniculatus_bairdii
ENSNBRG00000009964	LSM5	98	89.130	ENSPPYG00000017661	LSM5	51	89.130	Pongo_abelii
ENSNBRG00000009964	LSM5	96	88.889	ENSPCAG00000013740	LSM5	56	88.889	Procavia_capensis
ENSNBRG00000009964	LSM5	98	95.652	ENSPNYG00000022236	lsm5	52	95.652	Pundamilia_nyererei
ENSNBRG00000009964	LSM5	98	91.304	ENSRBIG00000027803	-	71	91.304	Rhinopithecus_bieti
ENSNBRG00000009964	LSM5	98	91.304	ENSRROG00000042782	-	71	91.304	Rhinopithecus_roxellana
ENSNBRG00000009964	LSM5	98	91.304	ENSSBOG00000012312	LSM5	72	91.304	Saimiri_boliviensis_boliviensis
ENSNBRG00000009964	LSM5	96	84.444	ENSSSCG00000029661	-	63	84.444	Sus_scrofa
ENSNBRG00000009964	LSM5	98	93.478	ENSTNIG00000008695	lsm5	52	93.478	Tetraodon_nigroviridis
ENSNBRG00000009964	LSM5	98	91.304	ENSUAMG00000009786	LSM5	60	91.304	Ursus_americanus
ENSNBRG00000009964	LSM5	98	85.714	ENSXETG00000026465	lsm5	60	85.714	Xenopus_tropicalis