EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000010079 (Gene tree)
Gene ID: 102798156
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 9247 bases
Position: chrJH422315.1:4473087-4482333
Accession: 102798156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000013011	PPR	PF01535.20	6.9e-19	1	2
ENSNBRP00000013011	PPR	PF01535.20	6.9e-19	2	2
ENSNBRP00000013031	PPR	PF01535.20	2.1e-15	1	2
ENSNBRP00000013031	PPR	PF01535.20	2.1e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000013380	-	2055	XM_006796172	ENSNBRP00000013011	684 (aa)	XP_006796235	-
ENSNBRT00000013399	-	2139	-	ENSNBRP00000013031	712 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000010079's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000010079's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000010079	ptcd1	84	48.247	ENSG00000248919	ATP5MF-PTCD1	79	48.339	Homo_sapiens
ENSNBRG00000010079	ptcd1	84	48.247	ENSG00000106246	PTCD1	85	48.339	Homo_sapiens
ENSNBRG00000010079	ptcd1	92	67.031	ENSAPOG00000010679	ptcd1	96	67.031	Acanthochromis_polyacanthus
ENSNBRG00000010079	ptcd1	86	50.897	ENSAMEG00000006224	-	80	50.897	Ailuropoda_melanoleuca
ENSNBRG00000010079	ptcd1	99	80.438	ENSACIG00000017861	ptcd1	97	84.404	Amphilophus_citrinellus
ENSNBRG00000010079	ptcd1	96	68.852	ENSAOCG00000020741	-	98	65.861	Amphiprion_ocellaris
ENSNBRG00000010079	ptcd1	92	68.388	ENSAOCG00000022617	ptcd1	94	68.388	Amphiprion_ocellaris
ENSNBRG00000010079	ptcd1	96	68.852	ENSAPEG00000022632	ptcd1	98	66.003	Amphiprion_percula
ENSNBRG00000010079	ptcd1	98	70.987	ENSATEG00000007016	ptcd1	97	70.243	Anabas_testudineus
ENSNBRG00000010079	ptcd1	84	49.416	ENSAPLG00000006862	-	92	49.500	Anas_platyrhynchos
ENSNBRG00000010079	ptcd1	84	49.416	ENSACAG00000012871	-	78	49.416	Anolis_carolinensis
ENSNBRG00000010079	ptcd1	85	48.208	ENSANAG00000035790	-	88	48.298	Aotus_nancymaae
ENSNBRG00000010079	ptcd1	96	96.218	ENSACLG00000002824	ptcd1	98	93.525	Astatotilapia_calliptera
ENSNBRG00000010079	ptcd1	86	50.789	ENSAMXG00000037292	ptcd1	88	50.946	Astyanax_mexicanus
ENSNBRG00000010079	ptcd1	88	48.089	ENSBTAG00000020440	-	78	47.418	Bos_taurus
ENSNBRG00000010079	ptcd1	84	48.505	ENSCJAG00000015815	-	85	48.595	Callithrix_jacchus
ENSNBRG00000010079	ptcd1	86	49.754	ENSCAFG00000015055	-	80	49.754	Canis_familiaris
ENSNBRG00000010079	ptcd1	86	49.918	ENSCAFG00020014480	-	80	49.918	Canis_lupus_dingo
ENSNBRG00000010079	ptcd1	91	47.939	ENSCHIG00000027000	-	92	46.847	Capra_hircus
ENSNBRG00000010079	ptcd1	84	48.684	ENSTSYG00000029495	-	85	49.259	Carlito_syrichta
ENSNBRG00000010079	ptcd1	88	46.635	ENSCAPG00000014660	-	93	47.695	Cavia_aperea
ENSNBRG00000010079	ptcd1	89	46.779	ENSCPOG00000001780	-	87	48.320	Cavia_porcellus
ENSNBRG00000010079	ptcd1	87	47.452	ENSCCAG00000034025	-	89	47.327	Cebus_capucinus
ENSNBRG00000010079	ptcd1	85	47.876	ENSCATG00000040859	-	88	47.235	Cercocebus_atys
ENSNBRG00000010079	ptcd1	85	48.788	ENSCLAG00000006354	-	88	48.038	Chinchilla_lanigera
ENSNBRG00000010079	ptcd1	79	49.110	ENSCSAG00000017794	-	85	48.370	Chlorocebus_sabaeus
ENSNBRG00000010079	ptcd1	84	47.419	ENSCPBG00000020866	-	83	47.419	Chrysemys_picta_bellii
ENSNBRG00000010079	ptcd1	72	30.144	ENSCING00000007717	-	92	30.144	Ciona_intestinalis
ENSNBRG00000010079	ptcd1	86	47.308	ENSCANG00000023441	-	86	48.124	Colobus_angolensis_palliatus
ENSNBRG00000010079	ptcd1	87	48.460	ENSCGRG00001023686	Ptcd1	87	48.864	Cricetulus_griseus_chok1gshd
ENSNBRG00000010079	ptcd1	87	48.460	ENSCGRG00000015031	Ptcd1	86	48.947	Cricetulus_griseus_crigri
ENSNBRG00000010079	ptcd1	96	59.852	ENSCSEG00000002378	ptcd1	96	57.992	Cynoglossus_semilaevis
ENSNBRG00000010079	ptcd1	99	68.576	ENSCVAG00000015826	ptcd1	98	66.857	Cyprinodon_variegatus
ENSNBRG00000010079	ptcd1	96	69.149	ENSCVAG00000003621	ptcd1	98	69.080	Cyprinodon_variegatus
ENSNBRG00000010079	ptcd1	86	53.094	ENSDARG00000076176	ptcd1	88	52.836	Danio_rerio
ENSNBRG00000010079	ptcd1	85	48.179	ENSDNOG00000009957	-	86	48.315	Dasypus_novemcinctus
ENSNBRG00000010079	ptcd1	85	48.435	ENSDORG00000000740	Ptcd1	88	48.377	Dipodomys_ordii
ENSNBRG00000010079	ptcd1	87	38.797	ENSEBUG00000014515	ptcd1	96	38.918	Eptatretus_burgeri
ENSNBRG00000010079	ptcd1	86	49.026	ENSEASG00005002480	-	86	49.435	Equus_asinus_asinus
ENSNBRG00000010079	ptcd1	86	49.351	ENSECAG00000016617	-	86	49.919	Equus_caballus
ENSNBRG00000010079	ptcd1	95	54.661	ENSELUG00000016517	ptcd1	95	54.661	Esox_lucius
ENSNBRG00000010079	ptcd1	86	49.349	ENSFCAG00000015069	-	86	49.674	Felis_catus
ENSNBRG00000010079	ptcd1	84	47.145	ENSFALG00000013803	-	87	45.972	Ficedula_albicollis
ENSNBRG00000010079	ptcd1	89	47.799	ENSFDAG00000006393	-	89	47.799	Fukomys_damarensis
ENSNBRG00000010079	ptcd1	75	73.846	ENSFHEG00000012491	ptcd1	93	72.388	Fundulus_heteroclitus
ENSNBRG00000010079	ptcd1	82	65.794	ENSGMOG00000007639	ptcd1	95	63.228	Gadus_morhua
ENSNBRG00000010079	ptcd1	84	47.480	ENSGALG00000004711	-	85	47.812	Gallus_gallus
ENSNBRG00000010079	ptcd1	87	71.022	ENSGAFG00000013175	ptcd1	90	67.402	Gambusia_affinis
ENSNBRG00000010079	ptcd1	85	71.380	ENSGACG00000016607	ptcd1	97	68.000	Gasterosteus_aculeatus
ENSNBRG00000010079	ptcd1	80	47.619	ENSGAGG00000021832	-	85	46.701	Gopherus_agassizii
ENSNBRG00000010079	ptcd1	85	46.895	ENSGGOG00000015123	-	86	46.992	Gorilla_gorilla
ENSNBRG00000010079	ptcd1	96	96.067	ENSHBUG00000018275	ptcd1	98	93.381	Haplochromis_burtoni
ENSNBRG00000010079	ptcd1	90	47.434	ENSHGLG00000017621	-	88	47.745	Heterocephalus_glaber_female
ENSNBRG00000010079	ptcd1	90	47.434	ENSHGLG00100007218	-	88	47.745	Heterocephalus_glaber_male
ENSNBRG00000010079	ptcd1	96	58.069	ENSHCOG00000010784	ptcd1	96	56.681	Hippocampus_comes
ENSNBRG00000010079	ptcd1	87	49.521	ENSSTOG00000001682	-	86	49.919	Ictidomys_tridecemlineatus
ENSNBRG00000010079	ptcd1	86	49.109	ENSJJAG00000000319	Ptcd1	87	49.837	Jaculus_jaculus
ENSNBRG00000010079	ptcd1	96	67.879	ENSKMAG00000008708	ptcd1	97	65.368	Kryptolebias_marmoratus
ENSNBRG00000010079	ptcd1	96	68.189	ENSLBEG00000008061	ptcd1	98	66.197	Labrus_bergylta
ENSNBRG00000010079	ptcd1	85	50.000	ENSLACG00000011172	ptcd1	83	50.000	Latimeria_chalumnae
ENSNBRG00000010079	ptcd1	85	52.488	ENSLOCG00000004833	ptcd1	93	51.827	Lepisosteus_oculatus
ENSNBRG00000010079	ptcd1	86	47.961	ENSLAFG00000002588	-	85	47.961	Loxodonta_africana
ENSNBRG00000010079	ptcd1	85	47.876	ENSMFAG00000041324	-	88	47.235	Macaca_fascicularis
ENSNBRG00000010079	ptcd1	85	47.876	ENSMMUG00000030408	-	88	47.235	Macaca_mulatta
ENSNBRG00000010079	ptcd1	85	47.876	ENSMNEG00000043786	-	88	47.235	Macaca_nemestrina
ENSNBRG00000010079	ptcd1	85	36.424	ENSMLEG00000031179	-	86	41.868	Mandrillus_leucophaeus
ENSNBRG00000010079	ptcd1	98	68.613	ENSMAMG00000007623	ptcd1	97	66.384	Mastacembelus_armatus
ENSNBRG00000010079	ptcd1	96	96.218	ENSMZEG00005012722	ptcd1	98	93.123	Maylandia_zebra
ENSNBRG00000010079	ptcd1	86	48.058	ENSMGAG00000004211	-	82	47.087	Meleagris_gallopavo
ENSNBRG00000010079	ptcd1	84	47.508	ENSMICG00000017428	-	92	45.053	Microcebus_murinus
ENSNBRG00000010079	ptcd1	96	69.265	ENSMMOG00000020243	ptcd1	94	71.732	Mola_mola
ENSNBRG00000010079	ptcd1	85	46.677	ENSMODG00000001350	-	86	45.683	Monodelphis_domestica
ENSNBRG00000010079	ptcd1	98	70.657	ENSMALG00000018442	ptcd1	96	70.057	Monopterus_albus
ENSNBRG00000010079	ptcd1	87	47.735	MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.392	Mus_caroli
ENSNBRG00000010079	ptcd1	87	49.353	ENSMUSG00000029624	Ptcd1	89	49.042	Mus_musculus
ENSNBRG00000010079	ptcd1	87	48.788	MGP_PahariEiJ_G0024580	Ptcd1	89	48.485	Mus_pahari
ENSNBRG00000010079	ptcd1	87	48.544	MGP_SPRETEiJ_G0029012	Ptcd1	89	48.882	Mus_spretus
ENSNBRG00000010079	ptcd1	85	48.837	ENSMPUG00000016518	-	87	47.981	Mustela_putorius_furo
ENSNBRG00000010079	ptcd1	86	49.273	ENSMLUG00000010994	-	86	47.050	Myotis_lucifugus
ENSNBRG00000010079	ptcd1	74	47.004	ENSNLEG00000011060	-	89	47.004	Nomascus_leucogenys
ENSNBRG00000010079	ptcd1	85	47.264	ENSMEUG00000006930	-	85	47.264	Notamacropus_eugenii
ENSNBRG00000010079	ptcd1	77	52.027	ENSOPRG00000013647	-	79	54.054	Ochotona_princeps
ENSNBRG00000010079	ptcd1	84	91.638	ENSONIG00000003168	ptcd1	100	89.816	Oreochromis_niloticus
ENSNBRG00000010079	ptcd1	87	45.469	ENSOANG00000007728	-	82	45.469	Ornithorhynchus_anatinus
ENSNBRG00000010079	ptcd1	84	49.003	ENSOCUG00000010584	-	86	47.994	Oryctolagus_cuniculus
ENSNBRG00000010079	ptcd1	96	67.119	ENSORLG00000009275	ptcd1	99	64.338	Oryzias_latipes
ENSNBRG00000010079	ptcd1	96	68.429	ENSORLG00020000988	ptcd1	99	65.598	Oryzias_latipes_hni
ENSNBRG00000010079	ptcd1	96	67.825	ENSORLG00015010557	ptcd1	99	65.015	Oryzias_latipes_hsok
ENSNBRG00000010079	ptcd1	96	68.533	ENSOMEG00000020627	ptcd1	99	65.886	Oryzias_melastigma
ENSNBRG00000010079	ptcd1	91	44.753	ENSOGAG00000010877	-	92	45.053	Otolemur_garnettii
ENSNBRG00000010079	ptcd1	91	44.854	ENSOARG00000018676	-	93	43.958	Ovis_aries
ENSNBRG00000010079	ptcd1	84	46.777	ENSPPAG00000036024	-	84	46.865	Pan_paniscus
ENSNBRG00000010079	ptcd1	86	49.837	ENSPPRG00000003478	-	87	49.837	Panthera_pardus
ENSNBRG00000010079	ptcd1	84	47.508	ENSPTRG00000019452	-	87	46.377	Pan_troglodytes
ENSNBRG00000010079	ptcd1	85	48.039	ENSPANG00000016730	-	88	47.393	Papio_anubis
ENSNBRG00000010079	ptcd1	84	51.342	ENSPKIG00000014215	ptcd1	86	51.607	Paramormyrops_kingsleyae
ENSNBRG00000010079	ptcd1	84	47.571	ENSPSIG00000011184	-	99	47.739	Pelodiscus_sinensis
ENSNBRG00000010079	ptcd1	72	42.775	ENSPMAG00000009667	ptcd1	100	42.775	Petromyzon_marinus
ENSNBRG00000010079	ptcd1	85	47.488	ENSPCIG00000024778	-	85	46.299	Phascolarctos_cinereus
ENSNBRG00000010079	ptcd1	95	67.223	ENSPFOG00000004458	ptcd1	97	63.909	Poecilia_formosa
ENSNBRG00000010079	ptcd1	95	67.428	ENSPLAG00000011051	ptcd1	97	64.327	Poecilia_latipinna
ENSNBRG00000010079	ptcd1	95	67.071	ENSPMEG00000020547	ptcd1	97	63.766	Poecilia_mexicana
ENSNBRG00000010079	ptcd1	86	70.558	ENSPREG00000000059	ptcd1	91	67.028	Poecilia_reticulata
ENSNBRG00000010079	ptcd1	86	46.992	ENSPPYG00000017377	-	91	46.992	Pongo_abelii
ENSNBRG00000010079	ptcd1	79	52.667	ENSPCAG00000001852	-	84	52.667	Procavia_capensis
ENSNBRG00000010079	ptcd1	85	48.520	ENSPCOG00000018596	-	91	47.295	Propithecus_coquereli
ENSNBRG00000010079	ptcd1	54	56.679	ENSPVAG00000007529	-	57	56.679	Pteropus_vampyrus
ENSNBRG00000010079	ptcd1	96	95.764	ENSPNYG00000019993	ptcd1	98	93.094	Pundamilia_nyererei
ENSNBRG00000010079	ptcd1	88	52.396	ENSPNAG00000014931	ptcd1	91	51.302	Pygocentrus_nattereri
ENSNBRG00000010079	ptcd1	85	47.565	ENSRNOG00000000987	Ptcd1	90	46.919	Rattus_norvegicus
ENSNBRG00000010079	ptcd1	86	47.798	ENSRBIG00000043393	-	86	48.613	Rhinopithecus_bieti
ENSNBRG00000010079	ptcd1	86	48.214	ENSRROG00000036420	-	86	49.026	Rhinopithecus_roxellana
ENSNBRG00000010079	ptcd1	84	48.259	ENSSBOG00000024114	-	85	48.350	Saimiri_boliviensis_boliviensis
ENSNBRG00000010079	ptcd1	85	47.421	ENSSHAG00000011376	-	91	47.421	Sarcophilus_harrisii
ENSNBRG00000010079	ptcd1	88	52.291	ENSSFOG00015007909	ptcd1	85	52.449	Scleropages_formosus
ENSNBRG00000010079	ptcd1	86	67.791	ENSSMAG00000000218	ptcd1	98	67.594	Scophthalmus_maximus
ENSNBRG00000010079	ptcd1	97	72.861	ENSSDUG00000015671	ptcd1	99	72.861	Seriola_dumerili
ENSNBRG00000010079	ptcd1	96	72.537	ENSSLDG00000014261	ptcd1	99	71.006	Seriola_lalandi_dorsalis
ENSNBRG00000010079	ptcd1	91	46.936	ENSSPUG00000003540	-	92	45.428	Sphenodon_punctatus
ENSNBRG00000010079	ptcd1	96	73.503	ENSSPAG00000011049	ptcd1	97	70.638	Stegastes_partitus
ENSNBRG00000010079	ptcd1	86	48.856	ENSSSCG00000007622	-	91	49.268	Sus_scrofa
ENSNBRG00000010079	ptcd1	84	47.731	ENSTGUG00000007563	-	96	48.067	Taeniopygia_guttata
ENSNBRG00000010079	ptcd1	97	64.845	ENSTRUG00000013471	ptcd1	98	62.570	Takifugu_rubripes
ENSNBRG00000010079	ptcd1	96	64.232	ENSTNIG00000008271	ptcd1	97	64.232	Tetraodon_nigroviridis
ENSNBRG00000010079	ptcd1	85	47.869	ENSTBEG00000011021	-	85	47.869	Tupaia_belangeri
ENSNBRG00000010079	ptcd1	86	48.287	ENSTTRG00000003006	-	87	48.287	Tursiops_truncatus
ENSNBRG00000010079	ptcd1	85	48.940	ENSUAMG00000008049	-	86	48.544	Ursus_americanus
ENSNBRG00000010079	ptcd1	86	49.755	ENSVVUG00000008836	-	86	49.755	Vulpes_vulpes
ENSNBRG00000010079	ptcd1	85	46.382	ENSXETG00000009891	ptcd1	86	45.990	Xenopus_tropicalis
ENSNBRG00000010079	ptcd1	95	67.688	ENSXMAG00000015540	ptcd1	98	64.132	Xiphophorus_maculatus