EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000011560 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 3402 bases
Position: chrJH422372.1:123670-127071
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000014970	Smg4_UPF3	PF03467.15	2.4e-50	1	1
ENSNBRP00000014961	Smg4_UPF3	PF03467.15	2.4e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000015380	-	621	-	ENSNBRP00000014970	206 (aa)	-	-
ENSNBRT00000015369	-	444	-	ENSNBRP00000014961	147 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000011560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000011560's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000011560	upf3b	95	64.516	ENSG00000125351	UPF3B	97	61.611	Homo_sapiens
ENSNBRG00000011560	upf3b	76	75.000	ENSACIG00000020468	upf3a	70	74.286	Amphilophus_citrinellus
ENSNBRG00000011560	upf3b	95	65.605	ENSANAG00000021894	-	98	60.849	Aotus_nancymaae
ENSNBRG00000011560	upf3b	95	60.510	ENSANAG00000025598	-	63	55.340	Aotus_nancymaae
ENSNBRG00000011560	upf3b	95	61.972	ENSANAG00000033169	-	71	61.326	Aotus_nancymaae
ENSNBRG00000011560	upf3b	97	87.500	ENSAMXG00000000199	upf3b	63	84.211	Astyanax_mexicanus
ENSNBRG00000011560	upf3b	95	65.605	ENSBTAG00000035615	UPF3B	67	62.621	Bos_taurus
ENSNBRG00000011560	upf3b	76	70.270	ENSBTAG00000047365	-	72	63.125	Bos_taurus
ENSNBRG00000011560	upf3b	95	63.871	ENSCJAG00000004975	UPF3B	98	60.377	Callithrix_jacchus
ENSNBRG00000011560	upf3b	95	64.968	ENSCHIG00000018011	-	67	62.136	Capra_hircus
ENSNBRG00000011560	upf3b	95	64.968	ENSTSYG00000014690	UPF3B	95	57.746	Carlito_syrichta
ENSNBRG00000011560	upf3b	95	49.677	ENSCCAG00000029813	-	68	51.485	Cebus_capucinus
ENSNBRG00000011560	upf3b	95	64.516	ENSCATG00000017506	UPF3B	98	60.849	Cercocebus_atys
ENSNBRG00000011560	upf3b	56	66.265	ENSCLAG00000000093	-	58	66.265	Chinchilla_lanigera
ENSNBRG00000011560	upf3b	70	72.816	ENSCPBG00000022854	-	79	72.816	Chrysemys_picta_bellii
ENSNBRG00000011560	upf3b	76	49.550	ENSCING00000008396	-	96	47.403	Ciona_intestinalis
ENSNBRG00000011560	upf3b	95	64.516	ENSCANG00000029220	UPF3B	64	62.621	Colobus_angolensis_palliatus
ENSNBRG00000011560	upf3b	95	62.581	ENSCGRG00001013643	-	57	59.906	Cricetulus_griseus_chok1gshd
ENSNBRG00000011560	upf3b	96	62.914	ENSFHEG00000010418	upf3a	84	62.879	Fundulus_heteroclitus
ENSNBRG00000011560	upf3b	75	72.727	ENSGALG00000016815	-	71	69.725	Gallus_gallus
ENSNBRG00000011560	upf3b	96	91.489	ENSGACG00000017435	upf3b	71	84.694	Gasterosteus_aculeatus
ENSNBRG00000011560	upf3b	69	73.529	ENSGAGG00000001952	UPF3A	82	68.750	Gopherus_agassizii
ENSNBRG00000011560	upf3b	95	64.516	ENSGGOG00000023995	UPF3B	79	65.161	Gorilla_gorilla
ENSNBRG00000011560	upf3b	82	72.131	ENSHCOG00000013985	upf3a	70	67.066	Hippocampus_comes
ENSNBRG00000011560	upf3b	76	65.766	ENSSTOG00000030282	-	73	56.897	Ictidomys_tridecemlineatus
ENSNBRG00000011560	upf3b	76	67.568	ENSJJAG00000018099	-	84	56.742	Jaculus_jaculus
ENSNBRG00000011560	upf3b	95	64.516	ENSMFAG00000045414	UPF3B	98	60.849	Macaca_fascicularis
ENSNBRG00000011560	upf3b	95	57.432	ENSMFAG00000045275	-	92	54.271	Macaca_fascicularis
ENSNBRG00000011560	upf3b	95	54.730	ENSMMUG00000046682	-	92	52.261	Macaca_mulatta
ENSNBRG00000011560	upf3b	95	64.516	ENSMMUG00000020222	UPF3B	98	60.849	Macaca_mulatta
ENSNBRG00000011560	upf3b	95	57.432	ENSMNEG00000040898	-	92	53.769	Macaca_nemestrina
ENSNBRG00000011560	upf3b	95	64.516	ENSMNEG00000039794	UPF3B	98	60.849	Macaca_nemestrina
ENSNBRG00000011560	upf3b	95	64.516	ENSMLEG00000010999	UPF3B	98	60.849	Mandrillus_leucophaeus
ENSNBRG00000011560	upf3b	95	65.605	ENSMICG00000001743	UPF3B	64	62.621	Microcebus_murinus
ENSNBRG00000011560	upf3b	55	67.901	ENSMICG00000042420	-	62	58.333	Microcebus_murinus
ENSNBRG00000011560	upf3b	94	60.870	ENSMALG00000002454	-	68	65.600	Monopterus_albus
ENSNBRG00000011560	upf3b	95	52.817	ENSNLEG00000027516	-	91	52.910	Nomascus_leucogenys
ENSNBRG00000011560	upf3b	80	75.214	ENSNLEG00000014897	UPF3B	63	75.214	Nomascus_leucogenys
ENSNBRG00000011560	upf3b	79	64.655	ENSODEG00000009176	-	64	61.875	Octodon_degus
ENSNBRG00000011560	upf3b	94	45.876	ENSODEG00000000596	-	95	45.876	Octodon_degus
ENSNBRG00000011560	upf3b	96	53.416	ENSODEG00000007164	-	86	55.729	Octodon_degus
ENSNBRG00000011560	upf3b	95	56.835	ENSODEG00000006064	-	95	55.612	Octodon_degus
ENSNBRG00000011560	upf3b	96	87.943	ENSORLG00020003758	upf3b	67	80.102	Oryzias_latipes_hni
ENSNBRG00000011560	upf3b	95	64.516	ENSPPAG00000040390	UPF3B	79	65.161	Pan_paniscus
ENSNBRG00000011560	upf3b	95	64.968	ENSPTIG00000015264	UPF3B	64	62.136	Panthera_tigris_altaica
ENSNBRG00000011560	upf3b	95	64.516	ENSPTRG00000022228	UPF3B	79	65.161	Pan_troglodytes
ENSNBRG00000011560	upf3b	94	56.463	ENSPANG00000029350	-	92	53.535	Papio_anubis
ENSNBRG00000011560	upf3b	95	64.516	ENSPANG00000000900	UPF3B	98	60.849	Papio_anubis
ENSNBRG00000011560	upf3b	96	83.916	ENSPKIG00000019226	upf3b	94	82.759	Paramormyrops_kingsleyae
ENSNBRG00000011560	upf3b	96	88.652	ENSPMGG00000016067	upf3b	65	89.266	Periophthalmus_magnuspinnatus
ENSNBRG00000011560	upf3b	85	65.600	ENSPCIG00000019590	-	74	62.130	Phascolarctos_cinereus
ENSNBRG00000011560	upf3b	95	61.333	ENSPLAG00000011960	upf3a	87	61.333	Poecilia_latipinna
ENSNBRG00000011560	upf3b	96	92.199	ENSPREG00000012214	upf3b	97	90.972	Poecilia_reticulata
ENSNBRG00000011560	upf3b	96	62.252	ENSPREG00000005566	upf3a	89	62.500	Poecilia_reticulata
ENSNBRG00000011560	upf3b	95	64.516	ENSPPYG00000020675	-	62	62.621	Pongo_abelii
ENSNBRG00000011560	upf3b	95	65.605	ENSPCOG00000021960	UPF3B	64	62.621	Propithecus_coquereli
ENSNBRG00000011560	upf3b	97	88.194	ENSPNAG00000021528	upf3b	64	80.105	Pygocentrus_nattereri
ENSNBRG00000011560	upf3b	95	64.516	ENSRROG00000041031	UPF3B	98	60.849	Rhinopithecus_roxellana
ENSNBRG00000011560	upf3b	95	64.516	ENSSBOG00000019740	UPF3B	98	63.592	Saimiri_boliviensis_boliviensis
ENSNBRG00000011560	upf3b	96	61.538	ENSSMAG00000003858	upf3a	95	61.644	Scophthalmus_maximus
ENSNBRG00000011560	upf3b	96	92.199	ENSSMAG00000012913	upf3b	64	85.204	Scophthalmus_maximus
ENSNBRG00000011560	upf3b	76	75.000	ENSSDUG00000009680	upf3a	60	74.227	Seriola_dumerili
ENSNBRG00000011560	upf3b	76	75.000	ENSSPAG00000007938	upf3a	69	67.333	Stegastes_partitus
ENSNBRG00000011560	upf3b	95	64.516	ENSVVUG00000011594	UPF3B	99	60.849	Vulpes_vulpes
ENSNBRG00000011560	upf3b	95	75.714	ENSXETG00000007440	upf3b	86	68.342	Xenopus_tropicalis
ENSNBRG00000011560	upf3b	96	90.780	ENSXCOG00000016586	upf3b	97	89.583	Xiphophorus_couchianus