EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000012127 (Gene tree)
Gene ID: 102776874
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 6586 bases
Position: chrJH422294.1:3609405-3615990
Accession: 102776874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000015648	zf-U11-48K	PF05253.12	1.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000016073	-	1209	XM_006791758	ENSNBRP00000015648	342 (aa)	XP_006791821	UPI0003EBF01B

Gene Model

Click here to download ENSNBRG00000012127's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000012127's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000012127	snrnp48	84	45.238	ENSG00000168566	SNRNP48	85	39.062	Homo_sapiens
ENSNBRG00000012127	snrnp48	94	81.988	ENSAPOG00000021430	snrnp48	93	82.278	Acanthochromis_polyacanthus
ENSNBRG00000012127	snrnp48	95	42.120	ENSAMEG00000017349	SNRNP48	73	47.843	Ailuropoda_melanoleuca
ENSNBRG00000012127	snrnp48	92	81.329	ENSACIG00000002032	snrnp48	93	81.329	Amphilophus_citrinellus
ENSNBRG00000012127	snrnp48	94	80.745	ENSAOCG00000010562	snrnp48	93	80.696	Amphiprion_ocellaris
ENSNBRG00000012127	snrnp48	94	80.745	ENSAPEG00000003231	snrnp48	93	80.063	Amphiprion_percula
ENSNBRG00000012127	snrnp48	90	81.029	ENSATEG00000020210	snrnp48	94	79.683	Anabas_testudineus
ENSNBRG00000012127	snrnp48	80	48.639	ENSACAG00000002811	SNRNP48	62	53.960	Anolis_carolinensis
ENSNBRG00000012127	snrnp48	84	45.578	ENSANAG00000033538	SNRNP48	76	47.510	Aotus_nancymaae
ENSNBRG00000012127	snrnp48	93	57.632	ENSAMXG00000015309	snrnp48	95	58.307	Astyanax_mexicanus
ENSNBRG00000012127	snrnp48	97	39.722	ENSBTAG00000001123	SNRNP48	98	42.941	Bos_taurus
ENSNBRG00000012127	snrnp48	82	45.833	ENSCJAG00000021330	SNRNP48	75	47.843	Callithrix_jacchus
ENSNBRG00000012127	snrnp48	94	41.176	ENSCAFG00000009574	SNRNP48	64	45.977	Canis_familiaris
ENSNBRG00000012127	snrnp48	95	41.349	ENSCAFG00020013203	SNRNP48	74	46.484	Canis_lupus_dingo
ENSNBRG00000012127	snrnp48	78	45.652	ENSCHIG00000015216	SNRNP48	74	47.287	Capra_hircus
ENSNBRG00000012127	snrnp48	84	44.558	ENSTSYG00000000698	SNRNP48	76	46.360	Carlito_syrichta
ENSNBRG00000012127	snrnp48	86	41.745	ENSCAPG00000006768	SNRNP48	73	48.889	Cavia_aperea
ENSNBRG00000012127	snrnp48	96	41.457	ENSCPOG00000007910	SNRNP48	76	47.893	Cavia_porcellus
ENSNBRG00000012127	snrnp48	80	45.965	ENSCCAG00000035652	SNRNP48	75	47.843	Cebus_capucinus
ENSNBRG00000012127	snrnp48	95	41.935	ENSCATG00000033947	SNRNP48	88	39.844	Cercocebus_atys
ENSNBRG00000012127	snrnp48	97	41.127	ENSCLAG00000003765	SNRNP48	98	44.477	Chinchilla_lanigera
ENSNBRG00000012127	snrnp48	84	45.578	ENSCSAG00000007409	SNRNP48	76	47.510	Chlorocebus_sabaeus
ENSNBRG00000012127	snrnp48	82	44.156	ENSCPBG00000019146	SNRNP48	65	51.923	Chrysemys_picta_bellii
ENSNBRG00000012127	snrnp48	84	45.578	ENSCANG00000030017	SNRNP48	76	47.510	Colobus_angolensis_palliatus
ENSNBRG00000012127	snrnp48	82	39.310	ENSCGRG00001008805	-	80	41.016	Cricetulus_griseus_chok1gshd
ENSNBRG00000012127	snrnp48	95	41.520	ENSCGRG00001001076	-	75	46.875	Cricetulus_griseus_chok1gshd
ENSNBRG00000012127	snrnp48	95	41.520	ENSCGRG00000007781	Snrnp48	75	46.875	Cricetulus_griseus_crigri
ENSNBRG00000012127	snrnp48	94	68.224	ENSCSEG00000000722	snrnp48	90	68.770	Cynoglossus_semilaevis
ENSNBRG00000012127	snrnp48	91	78.662	ENSCVAG00000019829	snrnp48	78	80.795	Cyprinodon_variegatus
ENSNBRG00000012127	snrnp48	90	52.516	ENSDARG00000039989	snrnp48	93	54.574	Danio_rerio
ENSNBRG00000012127	snrnp48	97	41.713	ENSDNOG00000014978	SNRNP48	98	42.815	Dasypus_novemcinctus
ENSNBRG00000012127	snrnp48	96	42.529	ENSDORG00000015140	Snrnp48	93	44.479	Dipodomys_ordii
ENSNBRG00000012127	snrnp48	82	44.291	ENSEASG00005012021	SNRNP48	74	46.094	Equus_asinus_asinus
ENSNBRG00000012127	snrnp48	82	44.637	ENSECAG00000026937	SNRNP48	74	46.484	Equus_caballus
ENSNBRG00000012127	snrnp48	88	60.897	ENSELUG00000009766	snrnp48	76	63.273	Esox_lucius
ENSNBRG00000012127	snrnp48	84	45.085	ENSFCAG00000018853	SNRNP48	76	46.947	Felis_catus
ENSNBRG00000012127	snrnp48	68	56.485	ENSFALG00000007797	SNRNP48	86	51.825	Ficedula_albicollis
ENSNBRG00000012127	snrnp48	96	42.450	ENSFDAG00000009231	SNRNP48	76	47.510	Fukomys_damarensis
ENSNBRG00000012127	snrnp48	65	81.448	ENSFHEG00000014647	snrnp48	93	79.478	Fundulus_heteroclitus
ENSNBRG00000012127	snrnp48	89	60.748	ENSGMOG00000018599	-	78	68.675	Gadus_morhua
ENSNBRG00000012127	snrnp48	75	53.030	ENSGALG00000013005	SNRNP48	88	52.273	Gallus_gallus
ENSNBRG00000012127	snrnp48	94	74.540	ENSGAFG00000021639	snrnp48	94	74.766	Gambusia_affinis
ENSNBRG00000012127	snrnp48	73	77.108	ENSGACG00000017756	-	96	70.898	Gasterosteus_aculeatus
ENSNBRG00000012127	snrnp48	82	43.831	ENSGAGG00000000865	SNRNP48	68	51.442	Gopherus_agassizii
ENSNBRG00000012127	snrnp48	84	45.578	ENSGGOG00000013220	SNRNP48	76	47.510	Gorilla_gorilla
ENSNBRG00000012127	snrnp48	100	98.251	ENSHBUG00000017066	snrnp48	100	98.251	Haplochromis_burtoni
ENSNBRG00000012127	snrnp48	97	40.000	ENSHGLG00000015241	SNRNP48	98	41.520	Heterocephalus_glaber_female
ENSNBRG00000012127	snrnp48	97	40.000	ENSHGLG00100010027	SNRNP48	98	41.520	Heterocephalus_glaber_male
ENSNBRG00000012127	snrnp48	74	75.099	ENSHCOG00000014066	snrnp48	93	69.659	Hippocampus_comes
ENSNBRG00000012127	snrnp48	84	45.918	ENSSTOG00000014635	SNRNP48	76	47.893	Ictidomys_tridecemlineatus
ENSNBRG00000012127	snrnp48	84	46.259	ENSJJAG00000011495	Snrnp48	76	47.893	Jaculus_jaculus
ENSNBRG00000012127	snrnp48	94	77.950	ENSKMAG00000016514	snrnp48	93	78.233	Kryptolebias_marmoratus
ENSNBRG00000012127	snrnp48	94	77.950	ENSLBEG00000026249	snrnp48	93	77.918	Labrus_bergylta
ENSNBRG00000012127	snrnp48	93	45.994	ENSLACG00000003958	SNRNP48	73	51.200	Latimeria_chalumnae
ENSNBRG00000012127	snrnp48	81	59.643	ENSLOCG00000004187	snrnp48	79	59.480	Lepisosteus_oculatus
ENSNBRG00000012127	snrnp48	97	39.326	ENSLAFG00000011152	SNRNP48	98	42.012	Loxodonta_africana
ENSNBRG00000012127	snrnp48	84	45.578	ENSMFAG00000045216	SNRNP48	84	40.650	Macaca_fascicularis
ENSNBRG00000012127	snrnp48	84	45.578	ENSMMUG00000014785	SNRNP48	76	47.510	Macaca_mulatta
ENSNBRG00000012127	snrnp48	82	46.021	ENSMNEG00000042269	SNRNP48	76	47.510	Macaca_nemestrina
ENSNBRG00000012127	snrnp48	84	45.578	ENSMLEG00000034004	SNRNP48	84	40.650	Mandrillus_leucophaeus
ENSNBRG00000012127	snrnp48	92	76.433	ENSMAMG00000018673	snrnp48	82	74.763	Mastacembelus_armatus
ENSNBRG00000012127	snrnp48	80	49.669	ENSMGAG00000006037	SNRNP48	68	60.099	Meleagris_gallopavo
ENSNBRG00000012127	snrnp48	95	42.216	ENSMAUG00000011944	Snrnp48	75	47.266	Mesocricetus_auratus
ENSNBRG00000012127	snrnp48	82	45.862	ENSMICG00000012497	SNRNP48	76	46.947	Microcebus_murinus
ENSNBRG00000012127	snrnp48	95	43.155	ENSMOCG00000015555	Snrnp48	76	48.450	Microtus_ochrogaster
ENSNBRG00000012127	snrnp48	55	83.684	ENSMMOG00000003072	-	60	83.684	Mola_mola
ENSNBRG00000012127	snrnp48	82	47.099	ENSMODG00000009996	SNRNP48	69	48.047	Monodelphis_domestica
ENSNBRG00000012127	snrnp48	94	79.503	ENSMALG00000005725	snrnp48	93	79.495	Monopterus_albus
ENSNBRG00000012127	snrnp48	95	41.813	MGP_CAROLIEiJ_G0018441	Snrnp48	75	47.266	Mus_caroli
ENSNBRG00000012127	snrnp48	95	41.813	ENSMUSG00000021431	Snrnp48	75	47.266	Mus_musculus
ENSNBRG00000012127	snrnp48	95	42.398	MGP_PahariEiJ_G0019509	Snrnp48	75	47.656	Mus_pahari
ENSNBRG00000012127	snrnp48	95	41.813	MGP_SPRETEiJ_G0019321	Snrnp48	75	47.266	Mus_spretus
ENSNBRG00000012127	snrnp48	95	42.775	ENSNGAG00000004849	Snrnp48	97	41.471	Nannospalax_galili
ENSNBRG00000012127	snrnp48	84	45.578	ENSNLEG00000011667	SNRNP48	76	47.510	Nomascus_leucogenys
ENSNBRG00000012127	snrnp48	88	43.210	ENSOPRG00000015471	SNRNP48	78	49.012	Ochotona_princeps
ENSNBRG00000012127	snrnp48	100	97.368	ENSONIG00000001520	snrnp48	100	97.368	Oreochromis_niloticus
ENSNBRG00000012127	snrnp48	54	36.232	ENSOANG00000019888	-	99	37.198	Ornithorhynchus_anatinus
ENSNBRG00000012127	snrnp48	78	45.985	ENSOCUG00000005168	SNRNP48	84	47.510	Oryctolagus_cuniculus
ENSNBRG00000012127	snrnp48	87	80.135	ENSORLG00000015654	snrnp48	99	77.843	Oryzias_latipes
ENSNBRG00000012127	snrnp48	87	79.461	ENSORLG00020015976	snrnp48	79	79.180	Oryzias_latipes_hni
ENSNBRG00000012127	snrnp48	87	78.451	ENSORLG00015022379	snrnp48	86	77.551	Oryzias_latipes_hsok
ENSNBRG00000012127	snrnp48	92	76.972	ENSOMEG00000022007	snrnp48	99	76.833	Oryzias_melastigma
ENSNBRG00000012127	snrnp48	81	45.645	ENSOGAG00000005275	SNRNP48	76	47.638	Otolemur_garnettii
ENSNBRG00000012127	snrnp48	66	50.427	ENSOARG00000017319	SNRNP48	70	52.709	Ovis_aries
ENSNBRG00000012127	snrnp48	84	45.578	ENSPPAG00000032873	SNRNP48	76	47.510	Pan_paniscus
ENSNBRG00000012127	snrnp48	82	45.172	ENSPPRG00000004283	SNRNP48	76	46.565	Panthera_pardus
ENSNBRG00000012127	snrnp48	68	48.729	ENSPTIG00000013502	SNRNP48	70	51.724	Panthera_tigris_altaica
ENSNBRG00000012127	snrnp48	84	45.578	ENSPTRG00000017703	SNRNP48	76	47.510	Pan_troglodytes
ENSNBRG00000012127	snrnp48	84	45.578	ENSPANG00000000771	SNRNP48	88	39.844	Papio_anubis
ENSNBRG00000012127	snrnp48	87	57.099	ENSPKIG00000013703	snrnp48	51	65.145	Paramormyrops_kingsleyae
ENSNBRG00000012127	snrnp48	84	45.302	ENSPSIG00000002213	SNRNP48	64	53.659	Pelodiscus_sinensis
ENSNBRG00000012127	snrnp48	75	66.160	ENSPMGG00000008120	snrnp48	92	66.154	Periophthalmus_magnuspinnatus
ENSNBRG00000012127	snrnp48	95	42.690	ENSPEMG00000008872	Snrnp48	75	48.438	Peromyscus_maniculatus_bairdii
ENSNBRG00000012127	snrnp48	94	76.074	ENSPFOG00000003578	snrnp48	94	76.636	Poecilia_formosa
ENSNBRG00000012127	snrnp48	69	77.966	ENSPLAG00000002290	snrnp48	82	77.966	Poecilia_latipinna
ENSNBRG00000012127	snrnp48	94	76.074	ENSPMEG00000018033	snrnp48	94	76.636	Poecilia_mexicana
ENSNBRG00000012127	snrnp48	94	74.540	ENSPREG00000018541	snrnp48	94	75.078	Poecilia_reticulata
ENSNBRG00000012127	snrnp48	84	44.898	ENSPPYG00000016209	SNRNP48	76	46.743	Pongo_abelii
ENSNBRG00000012127	snrnp48	71	37.109	ENSPCAG00000011991	SNRNP48	94	37.891	Procavia_capensis
ENSNBRG00000012127	snrnp48	84	46.959	ENSPVAG00000002854	SNRNP48	76	48.669	Pteropus_vampyrus
ENSNBRG00000012127	snrnp48	91	99.035	ENSPNYG00000015399	snrnp48	100	99.035	Pundamilia_nyererei
ENSNBRG00000012127	snrnp48	95	42.690	ENSRNOG00000013756	Snrnp48	75	48.047	Rattus_norvegicus
ENSNBRG00000012127	snrnp48	82	46.021	ENSRBIG00000043856	SNRNP48	80	48.047	Rhinopithecus_bieti
ENSNBRG00000012127	snrnp48	84	45.578	ENSRROG00000043229	SNRNP48	76	47.510	Rhinopithecus_roxellana
ENSNBRG00000012127	snrnp48	84	45.918	ENSSBOG00000019486	SNRNP48	76	47.893	Saimiri_boliviensis_boliviensis
ENSNBRG00000012127	snrnp48	83	47.157	ENSSHAG00000014483	SNRNP48	74	48.092	Sarcophilus_harrisii
ENSNBRG00000012127	snrnp48	73	59.924	ENSSFOG00015006610	snrnp48	62	59.924	Scleropages_formosus
ENSNBRG00000012127	snrnp48	94	78.505	ENSSDUG00000014953	snrnp48	93	78.797	Seriola_dumerili
ENSNBRG00000012127	snrnp48	94	78.505	ENSSLDG00000005989	snrnp48	93	78.797	Seriola_lalandi_dorsalis
ENSNBRG00000012127	snrnp48	82	46.053	ENSSPUG00000006257	SNRNP48	80	47.535	Sphenodon_punctatus
ENSNBRG00000012127	snrnp48	94	83.178	ENSSPAG00000006454	snrnp48	94	83.228	Stegastes_partitus
ENSNBRG00000012127	snrnp48	82	49.020	ENSTGUG00000007575	SNRNP48	66	58.571	Taeniopygia_guttata
ENSNBRG00000012127	snrnp48	74	73.333	ENSTRUG00000007031	snrnp48	100	68.895	Takifugu_rubripes
ENSNBRG00000012127	snrnp48	96	67.069	ENSTNIG00000012977	-	91	65.528	Tetraodon_nigroviridis
ENSNBRG00000012127	snrnp48	76	47.212	ENSTBEG00000015620	SNRNP48	76	47.126	Tupaia_belangeri
ENSNBRG00000012127	snrnp48	91	42.012	ENSTTRG00000016715	SNRNP48	76	47.308	Tursiops_truncatus
ENSNBRG00000012127	snrnp48	95	42.353	ENSUAMG00000003690	SNRNP48	74	47.843	Ursus_americanus
ENSNBRG00000012127	snrnp48	66	48.707	ENSVPAG00000003557	SNRNP48	70	51.232	Vicugna_pacos
ENSNBRG00000012127	snrnp48	95	41.349	ENSVVUG00000004996	SNRNP48	74	46.484	Vulpes_vulpes
ENSNBRG00000012127	snrnp48	89	44.590	ENSXETG00000020447	snrnp48	76	46.591	Xenopus_tropicalis
ENSNBRG00000012127	snrnp48	69	77.215	ENSXCOG00000004478	snrnp48	93	64.465	Xiphophorus_couchianus
ENSNBRG00000012127	snrnp48	94	75.610	ENSXMAG00000013595	snrnp48	94	76.012	Xiphophorus_maculatus