EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000012661 (Gene tree)
Gene ID: 102778965
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: lupus La protein homolog
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 9127 bases
Position: chrJH422286.1:7878145-7887271
Accession: 102778965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000016425	RRM_1	PF00076.22	1e-10	1	1
ENSNBRP00000016411	RRM_1	PF00076.22	1.1e-10	1	1
ENSNBRP00000016425	RRM_3	PF08777.11	1.3e-24	1	1
ENSNBRP00000016411	RRM_3	PF08777.11	7e-24	1	1
ENSNBRP00000016425	La	PF05383.17	5.7e-20	1	1
ENSNBRP00000016411	La	PF05383.17	6.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000016852	-	2239	XM_006788490	ENSNBRP00000016411	394 (aa)	XP_006788553	UPI0003EBFFD2
ENSNBRT00000016866	-	1134	-	ENSNBRP00000016425	377 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000012661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000012661's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000012661	ssb	100	54.054	ENSG00000138385	SSB	98	65.254	Homo_sapiens
ENSNBRG00000012661	ssb	100	78.500	ENSAPOG00000003448	ssb	100	78.250	Acanthochromis_polyacanthus
ENSNBRG00000012661	ssb	100	52.267	ENSAMEG00000010507	SSB	99	52.506	Ailuropoda_melanoleuca
ENSNBRG00000012661	ssb	100	83.854	ENSACIG00000001738	ssb	98	85.523	Amphilophus_citrinellus
ENSNBRG00000012661	ssb	100	78.500	ENSAOCG00000020398	ssb	100	78.750	Amphiprion_ocellaris
ENSNBRG00000012661	ssb	100	78.500	ENSAPEG00000020395	ssb	100	78.750	Amphiprion_percula
ENSNBRG00000012661	ssb	100	78.500	ENSATEG00000016884	ssb	100	78.750	Anabas_testudineus
ENSNBRG00000012661	ssb	100	52.370	ENSAPLG00000006109	SSB	99	52.370	Anas_platyrhynchos
ENSNBRG00000012661	ssb	100	52.840	ENSACAG00000017008	SSB	99	52.593	Anolis_carolinensis
ENSNBRG00000012661	ssb	100	50.750	ENSANAG00000027195	-	99	50.248	Aotus_nancymaae
ENSNBRG00000012661	ssb	100	98.939	ENSACLG00000010798	ssb	100	98.939	Astatotilapia_calliptera
ENSNBRG00000012661	ssb	100	57.908	ENSAMXG00000012606	ssb	100	58.293	Astyanax_mexicanus
ENSNBRG00000012661	ssb	100	54.839	ENSBTAG00000008716	SSB	99	55.087	Bos_taurus
ENSNBRG00000012661	ssb	100	55.446	ENSCJAG00000045073	SSB	99	55.693	Callithrix_jacchus
ENSNBRG00000012661	ssb	100	54.321	ENSCAFG00000012418	SSB	99	54.568	Canis_familiaris
ENSNBRG00000012661	ssb	100	54.321	ENSCAFG00020002900	SSB	99	54.568	Canis_lupus_dingo
ENSNBRG00000012661	ssb	100	51.485	ENSCHIG00000022196	-	99	51.880	Capra_hircus
ENSNBRG00000012661	ssb	100	55.198	ENSCHIG00000022624	-	99	55.446	Capra_hircus
ENSNBRG00000012661	ssb	99	54.094	ENSTSYG00000000097	SSB	99	54.342	Carlito_syrichta
ENSNBRG00000012661	ssb	100	54.703	ENSCPOG00000003338	SSB	99	54.950	Cavia_porcellus
ENSNBRG00000012661	ssb	100	55.198	ENSCCAG00000035147	SSB	99	55.446	Cebus_capucinus
ENSNBRG00000012661	ssb	71	50.519	ENSCATG00000036701	SSB	83	50.865	Cercocebus_atys
ENSNBRG00000012661	ssb	99	42.569	ENSCATG00000042909	-	97	42.569	Cercocebus_atys
ENSNBRG00000012661	ssb	100	54.703	ENSCLAG00000015617	-	99	54.950	Chinchilla_lanigera
ENSNBRG00000012661	ssb	100	54.950	ENSCSAG00000015200	SSB	88	55.198	Chlorocebus_sabaeus
ENSNBRG00000012661	ssb	96	50.258	ENSCSAG00000018390	-	97	50.258	Chlorocebus_sabaeus
ENSNBRG00000012661	ssb	100	55.941	ENSCHOG00000007763	SSB	99	56.188	Choloepus_hoffmanni
ENSNBRG00000012661	ssb	100	55.882	ENSCPBG00000006519	SSB	99	56.373	Chrysemys_picta_bellii
ENSNBRG00000012661	ssb	100	48.635	ENSCANG00000033240	-	99	48.139	Colobus_angolensis_palliatus
ENSNBRG00000012661	ssb	100	54.950	ENSCANG00000027695	SSB	99	55.198	Colobus_angolensis_palliatus
ENSNBRG00000012661	ssb	97	43.548	ENSCANG00000028838	-	90	44.503	Colobus_angolensis_palliatus
ENSNBRG00000012661	ssb	100	51.106	ENSCGRG00001024831	Ssb	99	51.106	Cricetulus_griseus_chok1gshd
ENSNBRG00000012661	ssb	100	51.106	ENSCGRG00000005387	Ssb	99	51.106	Cricetulus_griseus_crigri
ENSNBRG00000012661	ssb	99	75.689	ENSCSEG00000011599	ssb	99	76.441	Cynoglossus_semilaevis
ENSNBRG00000012661	ssb	100	74.065	ENSCVAG00000021558	ssb	100	76.060	Cyprinodon_variegatus
ENSNBRG00000012661	ssb	100	60.298	ENSDARG00000029252	ssb	100	58.561	Danio_rerio
ENSNBRG00000012661	ssb	100	54.950	ENSDNOG00000013450	SSB	99	55.198	Dasypus_novemcinctus
ENSNBRG00000012661	ssb	100	51.716	ENSDORG00000005543	Ssb	99	51.716	Dipodomys_ordii
ENSNBRG00000012661	ssb	90	34.659	FBgn0011638	La	81	35.562	Drosophila_melanogaster
ENSNBRG00000012661	ssb	51	61.881	ENSETEG00000004614	-	52	61.881	Echinops_telfairi
ENSNBRG00000012661	ssb	99	43.799	ENSEBUG00000001237	ssb	83	46.584	Eptatretus_burgeri
ENSNBRG00000012661	ssb	100	55.446	ENSEASG00005022835	SSB	99	55.693	Equus_asinus_asinus
ENSNBRG00000012661	ssb	100	55.446	ENSECAG00000018495	SSB	99	55.693	Equus_caballus
ENSNBRG00000012661	ssb	80	48.525	ENSEEUG00000008077	SSB	78	48.525	Erinaceus_europaeus
ENSNBRG00000012661	ssb	100	66.418	ENSELUG00000020929	ssb	100	66.667	Esox_lucius
ENSNBRG00000012661	ssb	100	55.062	ENSFCAG00000011601	SSB	99	55.309	Felis_catus
ENSNBRG00000012661	ssb	99	54.591	ENSFALG00000000930	SSB	99	54.591	Ficedula_albicollis
ENSNBRG00000012661	ssb	100	54.703	ENSFDAG00000000598	SSB	99	54.950	Fukomys_damarensis
ENSNBRG00000012661	ssb	74	71.429	ENSFHEG00000003268	ssb	95	68.404	Fundulus_heteroclitus
ENSNBRG00000012661	ssb	98	69.327	ENSGMOG00000002664	ssb	100	69.327	Gadus_morhua
ENSNBRG00000012661	ssb	99	55.335	ENSGALG00000009677	SSB	99	54.726	Gallus_gallus
ENSNBRG00000012661	ssb	100	74.257	ENSGAFG00000002749	ssb	100	75.000	Gambusia_affinis
ENSNBRG00000012661	ssb	100	75.369	ENSGACG00000005107	ssb	100	75.369	Gasterosteus_aculeatus
ENSNBRG00000012661	ssb	100	55.147	ENSGAGG00000007807	SSB	99	55.637	Gopherus_agassizii
ENSNBRG00000012661	ssb	53	48.858	ENSGGOG00000023471	-	89	49.315	Gorilla_gorilla
ENSNBRG00000012661	ssb	100	47.044	ENSGGOG00000024891	-	99	46.782	Gorilla_gorilla
ENSNBRG00000012661	ssb	100	97.970	ENSHBUG00000006584	ssb	100	97.970	Haplochromis_burtoni
ENSNBRG00000012661	ssb	100	53.771	ENSHGLG00000017580	-	99	54.015	Heterocephalus_glaber_female
ENSNBRG00000012661	ssb	98	51.015	ENSHGLG00000004478	-	97	51.015	Heterocephalus_glaber_female
ENSNBRG00000012661	ssb	100	47.880	ENSHGLG00000005832	-	99	48.130	Heterocephalus_glaber_female
ENSNBRG00000012661	ssb	100	49.136	ENSHGLG00100008767	-	99	49.010	Heterocephalus_glaber_male
ENSNBRG00000012661	ssb	100	53.771	ENSHGLG00100003084	-	99	54.015	Heterocephalus_glaber_male
ENSNBRG00000012661	ssb	99	73.367	ENSHCOG00000019011	ssb	99	74.112	Hippocampus_comes
ENSNBRG00000012661	ssb	100	60.488	ENSIPUG00000003681	SSB	100	59.756	Ictalurus_punctatus
ENSNBRG00000012661	ssb	100	55.198	ENSSTOG00000008416	SSB	99	55.087	Ictidomys_tridecemlineatus
ENSNBRG00000012661	ssb	91	43.526	ENSJJAG00000016250	-	94	43.978	Jaculus_jaculus
ENSNBRG00000012661	ssb	100	49.169	ENSJJAG00000023158	-	99	49.169	Jaculus_jaculus
ENSNBRG00000012661	ssb	100	76.000	ENSKMAG00000017317	ssb	100	76.000	Kryptolebias_marmoratus
ENSNBRG00000012661	ssb	100	76.000	ENSLBEG00000017345	ssb	100	76.000	Labrus_bergylta
ENSNBRG00000012661	ssb	99	54.115	ENSLACG00000014056	SSB	98	53.367	Latimeria_chalumnae
ENSNBRG00000012661	ssb	100	63.054	ENSLOCG00000007933	ssb	99	63.054	Lepisosteus_oculatus
ENSNBRG00000012661	ssb	78	42.373	ENSLAFG00000026721	-	98	43.960	Loxodonta_africana
ENSNBRG00000012661	ssb	100	52.494	ENSLAFG00000000867	-	99	52.969	Loxodonta_africana
ENSNBRG00000012661	ssb	100	48.622	ENSLAFG00000028909	-	99	48.120	Loxodonta_africana
ENSNBRG00000012661	ssb	100	54.950	ENSMFAG00000039066	SSB	99	55.198	Macaca_fascicularis
ENSNBRG00000012661	ssb	93	46.176	ENSMFAG00000041478	-	91	49.697	Macaca_fascicularis
ENSNBRG00000012661	ssb	99	40.554	ENSMMUG00000039889	-	98	40.806	Macaca_mulatta
ENSNBRG00000012661	ssb	100	54.950	ENSMMUG00000023051	SSB	99	55.198	Macaca_mulatta
ENSNBRG00000012661	ssb	100	48.000	ENSMMUG00000011724	-	97	48.000	Macaca_mulatta
ENSNBRG00000012661	ssb	93	46.176	ENSMNEG00000034698	-	91	49.697	Macaca_nemestrina
ENSNBRG00000012661	ssb	100	47.059	ENSMNEG00000028321	SSB	85	66.087	Macaca_nemestrina
ENSNBRG00000012661	ssb	100	38.596	ENSMLEG00000042644	-	99	38.596	Mandrillus_leucophaeus
ENSNBRG00000012661	ssb	100	54.950	ENSMLEG00000035717	SSB	99	55.198	Mandrillus_leucophaeus
ENSNBRG00000012661	ssb	100	78.250	ENSMAMG00000004800	ssb	100	78.750	Mastacembelus_armatus
ENSNBRG00000012661	ssb	100	98.939	ENSMZEG00005005749	ssb	100	98.939	Maylandia_zebra
ENSNBRG00000012661	ssb	99	55.087	ENSMGAG00000010328	SSB	100	61.353	Meleagris_gallopavo
ENSNBRG00000012661	ssb	98	49.735	ENSMICG00000033304	-	97	51.309	Microcebus_murinus
ENSNBRG00000012661	ssb	100	55.446	ENSMICG00000028252	-	99	55.693	Microcebus_murinus
ENSNBRG00000012661	ssb	100	45.161	ENSMODG00000019271	-	99	45.409	Monodelphis_domestica
ENSNBRG00000012661	ssb	100	51.942	ENSMODG00000008227	-	99	52.670	Monodelphis_domestica
ENSNBRG00000012661	ssb	100	42.327	ENSMODG00000007027	-	99	43.069	Monodelphis_domestica
ENSNBRG00000012661	ssb	100	75.591	ENSMALG00000008045	ssb	90	78.226	Monopterus_albus
ENSNBRG00000012661	ssb	100	48.565	MGP_CAROLIEiJ_G0023629	-	98	61.783	Mus_caroli
ENSNBRG00000012661	ssb	100	48.565	ENSMUSG00000068882	Ssb	98	61.783	Mus_musculus
ENSNBRG00000012661	ssb	100	48.681	MGP_PahariEiJ_G0025081	-	98	61.146	Mus_pahari
ENSNBRG00000012661	ssb	100	48.565	MGP_SPRETEiJ_G0024551	Ssb	98	61.783	Mus_spretus
ENSNBRG00000012661	ssb	100	55.198	ENSMPUG00000000785	SSB	99	55.446	Mustela_putorius_furo
ENSNBRG00000012661	ssb	100	53.125	ENSMLUG00000016316	SSB	99	52.644	Myotis_lucifugus
ENSNBRG00000012661	ssb	100	54.703	ENSNLEG00000004958	SSB	99	54.950	Nomascus_leucogenys
ENSNBRG00000012661	ssb	87	43.505	ENSNLEG00000028754	-	79	43.505	Nomascus_leucogenys
ENSNBRG00000012661	ssb	65	59.438	ENSMEUG00000001650	-	100	61.200	Notamacropus_eugenii
ENSNBRG00000012661	ssb	93	53.514	ENSODEG00000004202	-	99	53.243	Octodon_degus
ENSNBRG00000012661	ssb	100	93.655	ENSONIG00000008776	ssb	100	93.655	Oreochromis_niloticus
ENSNBRG00000012661	ssb	97	54.847	ENSOANG00000008543	SSB	96	55.867	Ornithorhynchus_anatinus
ENSNBRG00000012661	ssb	100	54.950	ENSOCUG00000010396	SSB	99	55.198	Oryctolagus_cuniculus
ENSNBRG00000012661	ssb	100	75.312	ENSORLG00000017208	ssb	100	76.060	Oryzias_latipes
ENSNBRG00000012661	ssb	100	74.876	ENSORLG00020022574	ssb	100	75.622	Oryzias_latipes_hni
ENSNBRG00000012661	ssb	100	76.060	ENSORLG00015016592	ssb	100	76.559	Oryzias_latipes_hsok
ENSNBRG00000012661	ssb	100	75.810	ENSOMEG00000003193	ssb	100	74.564	Oryzias_melastigma
ENSNBRG00000012661	ssb	100	52.494	ENSOGAG00000029768	SSB	99	52.019	Otolemur_garnettii
ENSNBRG00000012661	ssb	100	55.198	ENSOARG00000002906	SSB	99	55.446	Ovis_aries
ENSNBRG00000012661	ssb	100	47.291	ENSPPAG00000032427	-	100	57.364	Pan_paniscus
ENSNBRG00000012661	ssb	100	54.054	ENSPPAG00000042673	SSB	99	54.300	Pan_paniscus
ENSNBRG00000012661	ssb	97	44.845	ENSPPAG00000006189	-	96	44.845	Pan_paniscus
ENSNBRG00000012661	ssb	100	55.062	ENSPPRG00000006599	SSB	99	55.309	Panthera_pardus
ENSNBRG00000012661	ssb	100	55.062	ENSPTIG00000011021	SSB	97	55.309	Panthera_tigris_altaica
ENSNBRG00000012661	ssb	100	45.567	ENSPTRG00000042880	-	99	45.545	Pan_troglodytes
ENSNBRG00000012661	ssb	100	54.054	ENSPTRG00000012620	SSB	99	54.300	Pan_troglodytes
ENSNBRG00000012661	ssb	100	54.950	ENSPANG00000007440	SSB	99	55.198	Papio_anubis
ENSNBRG00000012661	ssb	98	38.441	ENSPANG00000031877	-	92	38.281	Papio_anubis
ENSNBRG00000012661	ssb	99	41.624	ENSPANG00000034126	-	97	41.476	Papio_anubis
ENSNBRG00000012661	ssb	100	66.089	ENSPKIG00000019325	ssb	99	66.418	Paramormyrops_kingsleyae
ENSNBRG00000012661	ssb	100	56.863	ENSPSIG00000002265	SSB	93	56.863	Pelodiscus_sinensis
ENSNBRG00000012661	ssb	89	68.343	ENSPMGG00000020075	ssb	92	66.572	Periophthalmus_magnuspinnatus
ENSNBRG00000012661	ssb	85	45.231	ENSPMAG00000002982	ssb	89	44.010	Petromyzon_marinus
ENSNBRG00000012661	ssb	100	53.827	ENSPCIG00000028591	-	99	53.827	Phascolarctos_cinereus
ENSNBRG00000012661	ssb	100	75.062	ENSPFOG00000009650	ssb	100	75.062	Poecilia_formosa
ENSNBRG00000012661	ssb	100	74.564	ENSPLAG00000020498	ssb	100	74.564	Poecilia_latipinna
ENSNBRG00000012661	ssb	100	75.062	ENSPMEG00000001051	ssb	100	75.062	Poecilia_mexicana
ENSNBRG00000012661	ssb	99	73.333	ENSPREG00000003708	ssb	97	76.694	Poecilia_reticulata
ENSNBRG00000012661	ssb	100	54.703	ENSPPYG00000012919	SSB	99	54.950	Pongo_abelii
ENSNBRG00000012661	ssb	95	53.141	ENSPCAG00000010276	SSB	99	53.403	Procavia_capensis
ENSNBRG00000012661	ssb	100	49.257	ENSPCOG00000023189	-	99	49.505	Propithecus_coquereli
ENSNBRG00000012661	ssb	100	52.475	ENSPCOG00000015741	-	92	63.793	Propithecus_coquereli
ENSNBRG00000012661	ssb	93	53.221	ENSPVAG00000006615	SSB	100	54.930	Pteropus_vampyrus
ENSNBRG00000012661	ssb	100	98.939	ENSPNYG00000006444	ssb	100	98.939	Pundamilia_nyererei
ENSNBRG00000012661	ssb	86	62.270	ENSPNAG00000011708	ssb	100	57.843	Pygocentrus_nattereri
ENSNBRG00000012661	ssb	100	49.282	ENSRNOG00000007998	Ssb	99	49.522	Rattus_norvegicus
ENSNBRG00000012661	ssb	100	50.370	ENSRNOG00000011606	AABR07061825.1	99	49.630	Rattus_norvegicus
ENSNBRG00000012661	ssb	94	46.419	ENSRBIG00000041232	-	98	46.419	Rhinopithecus_bieti
ENSNBRG00000012661	ssb	100	47.549	ENSRBIG00000041972	SSB	88	66.087	Rhinopithecus_bieti
ENSNBRG00000012661	ssb	86	51.744	ENSRBIG00000041608	-	94	52.035	Rhinopithecus_bieti
ENSNBRG00000012661	ssb	99	40.452	ENSRBIG00000029918	-	97	40.452	Rhinopithecus_bieti
ENSNBRG00000012661	ssb	99	45.729	ENSRROG00000007149	-	97	45.729	Rhinopithecus_roxellana
ENSNBRG00000012661	ssb	100	54.950	ENSRROG00000040346	SSB	99	55.198	Rhinopithecus_roxellana
ENSNBRG00000012661	ssb	98	47.208	ENSRROG00000031684	-	88	58.784	Rhinopithecus_roxellana
ENSNBRG00000012661	ssb	86	53.161	ENSRROG00000034102	-	85	53.448	Rhinopithecus_roxellana
ENSNBRG00000012661	ssb	100	54.950	ENSSBOG00000027204	SSB	99	55.198	Saimiri_boliviensis_boliviensis
ENSNBRG00000012661	ssb	100	54.321	ENSSHAG00000018062	SSB	99	55.062	Sarcophilus_harrisii
ENSNBRG00000012661	ssb	100	64.938	ENSSFOG00015000550	ssb	99	63.951	Scleropages_formosus
ENSNBRG00000012661	ssb	100	76.396	ENSSMAG00000013885	ssb	99	79.189	Scophthalmus_maximus
ENSNBRG00000012661	ssb	100	80.500	ENSSDUG00000020117	ssb	100	80.750	Seriola_dumerili
ENSNBRG00000012661	ssb	100	76.884	ENSSLDG00000002525	ssb	100	77.136	Seriola_lalandi_dorsalis
ENSNBRG00000012661	ssb	95	50.000	ENSSARG00000007747	SSB	99	49.869	Sorex_araneus
ENSNBRG00000012661	ssb	100	55.911	ENSSPUG00000012112	SSB	99	56.049	Sphenodon_punctatus
ENSNBRG00000012661	ssb	100	77.000	ENSSPAG00000005696	ssb	100	77.250	Stegastes_partitus
ENSNBRG00000012661	ssb	98	50.933	ENSSSCG00000015938	SSB	96	52.564	Sus_scrofa
ENSNBRG00000012661	ssb	97	53.639	ENSTGUG00000007942	SSB	99	54.321	Taeniopygia_guttata
ENSNBRG00000012661	ssb	100	73.869	ENSTRUG00000017839	ssb	100	73.869	Takifugu_rubripes
ENSNBRG00000012661	ssb	97	70.811	ENSTNIG00000000915	ssb	100	73.130	Tetraodon_nigroviridis
ENSNBRG00000012661	ssb	82	66.087	ENSTBEG00000009056	SSB	81	66.087	Tupaia_belangeri
ENSNBRG00000012661	ssb	100	55.802	ENSTTRG00000002152	SSB	99	56.049	Tursiops_truncatus
ENSNBRG00000012661	ssb	99	52.865	ENSUAMG00000027833	SSB	99	55.000	Ursus_americanus
ENSNBRG00000012661	ssb	100	54.321	ENSUMAG00000013907	SSB	99	54.568	Ursus_maritimus
ENSNBRG00000012661	ssb	100	54.342	ENSVPAG00000007183	SSB	99	54.591	Vicugna_pacos
ENSNBRG00000012661	ssb	100	54.321	ENSVVUG00000016573	SSB	77	54.568	Vulpes_vulpes
ENSNBRG00000012661	ssb	98	51.467	ENSXETG00000025402	ssb	99	50.000	Xenopus_tropicalis
ENSNBRG00000012661	ssb	99	70.027	ENSXCOG00000019109	ssb	99	69.974	Xiphophorus_couchianus
ENSNBRG00000012661	ssb	100	72.525	ENSXMAG00000004888	ssb	100	72.525	Xiphophorus_maculatus