EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000012904 (Gene tree)
Gene ID: 102788728
Gene Symbol: si:ch73-14h10.2
Alias: wu:fe48h10|zgc:101795
Full Name: U6 snRNA-associated Sm-like protein LSm2-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 2480 bases
Position: chrJH422290.1:6584307-6586786
Accession: 102788728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000016796	LSM	PF01423.22	1.6e-16	1	1
ENSNBRP00000016765	LSM	PF01423.22	1.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000017215	-	264	-	ENSNBRP00000016765	87 (aa)	-	-
ENSNBRT00000017247	-	291	XM_006790417	ENSNBRP00000016796	96 (aa)	XP_006790480	-

Gene Model

Click here to download ENSNBRG00000012904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000012904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000012904	si:ch73-14h10.2	97	31.313	ENSNBRG00000022150	lsm4	60	31.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSG00000204392	LSM2	99	96.875	Homo_sapiens
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSAPOG00000017967	si:ch73-14h10.2	99	97.917	Acanthochromis_polyacanthus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSAMEG00000006483	LSM2	100	96.875	Ailuropoda_melanoleuca
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSACIG00000007795	si:ch73-14h10.2	62	97.917	Amphilophus_citrinellus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSAOCG00000006949	si:ch73-14h10.2	78	97.917	Amphiprion_ocellaris
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSAPEG00000020375	si:ch73-14h10.2	87	97.917	Amphiprion_percula
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSATEG00000011376	si:ch73-14h10.2	99	97.917	Anabas_testudineus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSACAG00000017281	LSM2	90	96.875	Anolis_carolinensis
ENSNBRG00000012904	si:ch73-14h10.2	87	92.105	ENSANAG00000028033	-	96	78.495	Aotus_nancymaae
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSANAG00000028372	LSM2	99	96.875	Aotus_nancymaae
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSACLG00000024717	smx5	99	97.917	Astatotilapia_calliptera
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSAMXG00000036868	si:ch73-14h10.2	99	97.917	Astyanax_mexicanus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSBTAG00000005634	LSM2	99	96.875	Bos_taurus
ENSNBRG00000012904	si:ch73-14h10.2	99	81.053	WBGene00001808	gut-2	96	81.053	Caenorhabditis_elegans
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCJAG00000040899	LSM2	99	96.875	Callithrix_jacchus
ENSNBRG00000012904	si:ch73-14h10.2	82	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCHIG00000016153	LSM2	100	96.875	Capra_hircus
ENSNBRG00000012904	si:ch73-14h10.2	99	87.368	ENSTSYG00000030015	-	99	87.368	Carlito_syrichta
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSTSYG00000034844	LSM2	99	96.875	Carlito_syrichta
ENSNBRG00000012904	si:ch73-14h10.2	83	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCPOG00000021053	LSM2	99	96.875	Cavia_porcellus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCCAG00000024276	LSM2	99	96.875	Cebus_capucinus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCATG00000013737	LSM2	99	96.875	Cercocebus_atys
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCLAG00000008081	LSM2	99	96.875	Chinchilla_lanigera
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCSAG00000008800	LSM2	99	96.875	Chlorocebus_sabaeus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCHOG00000007702	LSM2	99	96.875	Choloepus_hoffmanni
ENSNBRG00000012904	si:ch73-14h10.2	100	93.750	ENSCING00000022677	-	99	93.750	Ciona_intestinalis
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCANG00000039576	LSM2	99	96.875	Colobus_angolensis_palliatus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSCGRG00001013932	Lsm2	99	96.875	Cricetulus_griseus_chok1gshd
ENSNBRG00000012904	si:ch73-14h10.2	83	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSCSEG00000002911	si:ch73-14h10.2	99	97.917	Cynoglossus_semilaevis
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSCVAG00000015394	si:ch73-14h10.2	89	97.917	Cyprinodon_variegatus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSDARG00000070867	smx5	99	96.875	Danio_rerio
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSDNOG00000002633	LSM2	100	96.875	Dasypus_novemcinctus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSDORG00000026571	Lsm2	99	96.875	Dipodomys_ordii
ENSNBRG00000012904	si:ch73-14h10.2	96	93.478	FBgn0036277	CG10418	95	93.478	Drosophila_melanogaster
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSEASG00005015670	LSM2	79	96.875	Equus_asinus_asinus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSECAG00000018791	LSM2	79	96.875	Equus_caballus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSELUG00000008241	smx5	99	96.875	Esox_lucius
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSFCAG00000045887	LSM2	99	96.875	Felis_catus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSFDAG00000000390	LSM2	99	96.875	Fukomys_damarensis
ENSNBRG00000012904	si:ch73-14h10.2	100	98.958	ENSFHEG00000009619	si:ch73-14h10.2	100	98.958	Fundulus_heteroclitus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSGMOG00000019208	si:ch73-14h10.2	100	97.917	Gadus_morhua
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSGAFG00000017286	si:ch73-14h10.2	99	97.917	Gambusia_affinis
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSGACG00000003827	si:ch73-14h10.2	99	97.917	Gasterosteus_aculeatus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSGAGG00000012458	LSM2	99	96.875	Gopherus_agassizii
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSGGOG00000011383	LSM2	99	96.875	Gorilla_gorilla
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSHGLG00000011299	LSM2	99	96.875	Heterocephalus_glaber_female
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSHGLG00100017194	LSM2	99	96.875	Heterocephalus_glaber_male
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSHCOG00000014057	si:ch73-14h10.2	99	97.917	Hippocampus_comes
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSIPUG00000010539	lsm2	99	97.917	Ictalurus_punctatus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSSTOG00000013144	LSM2	99	96.875	Ictidomys_tridecemlineatus
ENSNBRG00000012904	si:ch73-14h10.2	95	74.725	ENSJJAG00000019477	-	100	74.725	Jaculus_jaculus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSKMAG00000014909	si:ch73-14h10.2	99	97.917	Kryptolebias_marmoratus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSLBEG00000025781	si:ch73-14h10.2	98	96.875	Labrus_bergylta
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSLACG00000015064	LSM2	99	97.917	Latimeria_chalumnae
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSLOCG00000005228	si:ch73-14h10.2	99	97.917	Lepisosteus_oculatus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSLAFG00000016139	LSM2	100	96.875	Loxodonta_africana
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMFAG00000001016	LSM2	99	96.875	Macaca_fascicularis
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMMUG00000006832	LSM2	99	96.875	Macaca_mulatta
ENSNBRG00000012904	si:ch73-14h10.2	100	79.167	ENSMMUG00000045473	-	97	79.167	Macaca_mulatta
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMNEG00000045355	LSM2	99	96.875	Macaca_nemestrina
ENSNBRG00000012904	si:ch73-14h10.2	86	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSNBRG00000012904	si:ch73-14h10.2	100	78.125	ENSMLEG00000031181	-	97	78.125	Mandrillus_leucophaeus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMLEG00000037369	-	99	96.875	Mandrillus_leucophaeus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSMAMG00000010053	si:ch73-14h10.2	72	97.917	Mastacembelus_armatus
ENSNBRG00000012904	si:ch73-14h10.2	100	100.000	ENSMZEG00005008688	si:ch73-14h10.2	100	100.000	Maylandia_zebra
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMAUG00000021966	Lsm2	99	96.875	Mesocricetus_auratus
ENSNBRG00000012904	si:ch73-14h10.2	83	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMOCG00000015306	Lsm2	99	96.875	Microtus_ochrogaster
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMMOG00000005603	si:ch73-14h10.2	100	96.875	Mola_mola
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSMODG00000015177	LSM2	99	97.917	Monodelphis_domestica
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSMALG00000016490	si:ch73-14h10.2	99	97.917	Monopterus_albus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	MGP_CAROLIEiJ_G0021490	Lsm2	99	96.875	Mus_caroli
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSMUSG00000007050	Lsm2	99	96.875	Mus_musculus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	MGP_PahariEiJ_G0020485	Lsm2	99	96.875	Mus_pahari
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	MGP_SPRETEiJ_G0022395	Lsm2	99	96.875	Mus_spretus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSNGAG00000003997	Lsm2	99	96.875	Nannospalax_galili
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSNLEG00000035542	LSM2	99	96.875	Nomascus_leucogenys
ENSNBRG00000012904	si:ch73-14h10.2	82	100.000	ENSMEUG00000003419	LSM2	100	100.000	Notamacropus_eugenii
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSOPRG00000003668	LSM2	99	96.875	Ochotona_princeps
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSODEG00000017583	LSM2	99	96.875	Octodon_degus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSONIG00000019321	si:ch73-14h10.2	99	97.917	Oreochromis_niloticus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSOANG00000005398	LSM2	100	96.875	Ornithorhynchus_anatinus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSOCUG00000002583	LSM2	99	96.875	Oryctolagus_cuniculus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSORLG00000029858	si:ch73-14h10.2	99	97.917	Oryzias_latipes
ENSNBRG00000012904	si:ch73-14h10.2	100	78.049	ENSORLG00015000465	si:ch73-14h10.2	99	78.049	Oryzias_latipes_hsok
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSOMEG00000002892	si:ch73-14h10.2	99	97.917	Oryzias_melastigma
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSOARG00000004575	LSM2	100	96.875	Ovis_aries
ENSNBRG00000012904	si:ch73-14h10.2	86	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPPAG00000032431	LSM2	99	96.875	Pan_paniscus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPPRG00000015353	LSM2	99	96.875	Panthera_pardus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPTIG00000010303	LSM2	99	96.875	Panthera_tigris_altaica
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPTRG00000017986	LSM2	99	96.875	Pan_troglodytes
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPANG00000024577	LSM2	99	96.875	Papio_anubis
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPKIG00000007028	si:ch73-14h10.2	99	97.917	Paramormyrops_kingsleyae
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPSIG00000004458	LSM2	78	96.875	Pelodiscus_sinensis
ENSNBRG00000012904	si:ch73-14h10.2	100	95.833	ENSPMGG00000018511	si:ch73-14h10.2	100	95.833	Periophthalmus_magnuspinnatus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPCIG00000018560	-	95	97.917	Phascolarctos_cinereus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPFOG00000001621	si:ch73-14h10.2	99	97.917	Poecilia_formosa
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPLAG00000017165	si:ch73-14h10.2	99	97.917	Poecilia_latipinna
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPMEG00000019574	si:ch73-14h10.2	99	97.917	Poecilia_mexicana
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPREG00000016534	si:ch73-14h10.2	100	96.875	Poecilia_reticulata
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPPYG00000016461	-	53	96.875	Pongo_abelii
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPCAG00000013737	LSM2	99	96.875	Procavia_capensis
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPCOG00000020134	LSM2	99	96.875	Propithecus_coquereli
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSPVAG00000012405	LSM2	99	96.875	Pteropus_vampyrus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPNYG00000019298	smx5	99	97.917	Pundamilia_nyererei
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSPNAG00000027769	si:ch73-14h10.2	99	97.917	Pygocentrus_nattereri
ENSNBRG00000012904	si:ch73-14h10.2	55	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSRNOG00000048725	Lsm2	99	96.875	Rattus_norvegicus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSRBIG00000010172	LSM2	99	96.875	Rhinopithecus_bieti
ENSNBRG00000012904	si:ch73-14h10.2	86	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSNBRG00000012904	si:ch73-14h10.2	86	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSRROG00000030345	LSM2	99	96.875	Rhinopithecus_roxellana
ENSNBRG00000012904	si:ch73-14h10.2	100	62.500	YBL026W	LSM2	99	62.500	Saccharomyces_cerevisiae
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSSBOG00000018943	LSM2	99	96.875	Saimiri_boliviensis_boliviensis
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSSFOG00015006734	lsm2	99	97.917	Scleropages_formosus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSSMAG00000001122	si:ch73-14h10.2	99	96.875	Scophthalmus_maximus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSSDUG00000021605	smx5	99	97.917	Seriola_dumerili
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSSLDG00000002765	si:ch73-14h10.2	99	97.917	Seriola_lalandi_dorsalis
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSSPUG00000009631	LSM2	99	97.917	Sphenodon_punctatus
ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	ENSSPAG00000016904	si:ch73-14h10.2	99	97.917	Stegastes_partitus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSSSCG00000039021	LSM2	99	96.875	Sus_scrofa
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSTRUG00000002093	si:ch73-14h10.2	100	96.875	Takifugu_rubripes
ENSNBRG00000012904	si:ch73-14h10.2	71	92.647	ENSTNIG00000013770	si:ch73-14h10.2	99	92.647	Tetraodon_nigroviridis
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSTTRG00000014131	LSM2	99	96.875	Tursiops_truncatus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSUMAG00000013425	LSM2	65	96.875	Ursus_maritimus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSVPAG00000001761	LSM2	100	96.875	Vicugna_pacos
ENSNBRG00000012904	si:ch73-14h10.2	86	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSXETG00000024077	lsm2	99	96.875	Xenopus_tropicalis
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSXCOG00000006078	si:ch73-14h10.2	100	96.875	Xiphophorus_couchianus
ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	ENSXMAG00000028018	si:ch73-14h10.2	100	96.875	Xiphophorus_maculatus