EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000013839 (Gene tree)
Gene ID: -
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain-helicase-DNA-binding protein 6-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 45865 bases
Position: chrJH422277.1:7803389-7849253
Accession: 102778367
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000018197	ResIII	PF04851.15	1e-06	1	1
ENSNBRP00000018197	BRK	PF07533.16	2.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000018687	-	8439	XM_006782989	ENSNBRP00000018197	2812 (aa)	XP_006783052	-
ENSNBRT00000018699	-	1461	-	ENSNBRP00000018209	486 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000013839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000013839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000013839	chd6	52	58.491	ENSNBRG00000017428	chd8	59	58.832
ENSNBRG00000013839	chd6	68	65.314	ENSNBRG00000001280	chd7	77	65.240
ENSNBRG00000013839	chd6	50	64.086	ENSNBRG00000009423	chd9	75	63.662

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000013839	chd6	79	72.309	ENSG00000124177	CHD6	99	81.176	Homo_sapiens
ENSNBRG00000013839	chd6	97	82.196	ENSAPOG00000013736	chd6	85	82.290	Acanthochromis_polyacanthus
ENSNBRG00000013839	chd6	79	73.221	ENSAMEG00000009496	CHD6	78	73.433	Ailuropoda_melanoleuca
ENSNBRG00000013839	chd6	99	81.848	ENSATEG00000005608	chd6	85	85.049	Anabas_testudineus
ENSNBRG00000013839	chd6	75	76.902	ENSAPLG00000015592	CHD6	78	73.732	Anas_platyrhynchos
ENSNBRG00000013839	chd6	77	72.606	ENSACAG00000006842	CHD6	77	70.052	Anolis_carolinensis
ENSNBRG00000013839	chd6	79	72.982	ENSANAG00000037548	CHD6	99	81.550	Aotus_nancymaae
ENSNBRG00000013839	chd6	96	69.331	ENSAMXG00000009576	chd6	88	71.102	Astyanax_mexicanus
ENSNBRG00000013839	chd6	79	73.581	ENSBTAG00000005733	CHD6	75	73.386	Bos_taurus
ENSNBRG00000013839	chd6	79	72.917	ENSCJAG00000017920	CHD6	99	81.365	Callithrix_jacchus
ENSNBRG00000013839	chd6	79	73.499	ENSCAFG00000009236	CHD6	78	73.368	Canis_familiaris
ENSNBRG00000013839	chd6	79	74.339	ENSCAFG00020012906	CHD6	94	84.078	Canis_lupus_dingo
ENSNBRG00000013839	chd6	82	70.836	ENSCHIG00000017606	CHD6	75	73.979	Capra_hircus
ENSNBRG00000013839	chd6	68	77.952	ENSTSYG00000014635	CHD6	79	78.322	Carlito_syrichta
ENSNBRG00000013839	chd6	79	72.775	ENSCPOG00000015641	CHD6	78	73.017	Cavia_porcellus
ENSNBRG00000013839	chd6	79	73.112	ENSCCAG00000036828	CHD6	99	81.550	Cebus_capucinus
ENSNBRG00000013839	chd6	79	73.180	ENSCATG00000039248	CHD6	99	81.550	Cercocebus_atys
ENSNBRG00000013839	chd6	79	73.190	ENSCLAG00000013743	CHD6	78	73.238	Chinchilla_lanigera
ENSNBRG00000013839	chd6	79	72.309	ENSCSAG00000013997	CHD6	78	73.172	Chlorocebus_sabaeus
ENSNBRG00000013839	chd6	59	74.116	ENSCHOG00000012647	CHD6	68	73.770	Choloepus_hoffmanni
ENSNBRG00000013839	chd6	78	76.696	ENSCPBG00000019382	CHD6	80	74.101	Chrysemys_picta_bellii
ENSNBRG00000013839	chd6	79	72.969	ENSCANG00000043435	CHD6	99	81.550	Colobus_angolensis_palliatus
ENSNBRG00000013839	chd6	80	72.681	ENSCGRG00001002694	Chd6	79	72.745	Cricetulus_griseus_chok1gshd
ENSNBRG00000013839	chd6	98	73.257	ENSDARG00000017244	chd6	91	73.692	Danio_rerio
ENSNBRG00000013839	chd6	79	72.505	ENSDNOG00000004176	CHD6	79	73.451	Dasypus_novemcinctus
ENSNBRG00000013839	chd6	80	72.785	ENSEASG00005023433	CHD6	95	85.756	Equus_asinus_asinus
ENSNBRG00000013839	chd6	80	72.219	ENSECAG00000011761	CHD6	78	73.451	Equus_caballus
ENSNBRG00000013839	chd6	70	82.814	ENSELUG00000012309	chd6	93	82.451	Esox_lucius
ENSNBRG00000013839	chd6	79	73.451	ENSFCAG00000003572	CHD6	78	73.368	Felis_catus
ENSNBRG00000013839	chd6	75	77.590	ENSFALG00000012563	CHD6	77	73.916	Ficedula_albicollis
ENSNBRG00000013839	chd6	79	71.861	ENSFDAG00000013791	CHD6	78	72.864	Fukomys_damarensis
ENSNBRG00000013839	chd6	78	84.677	ENSGMOG00000011715	chd6	90	80.680	Gadus_morhua
ENSNBRG00000013839	chd6	85	80.035	ENSGACG00000000037	chd6	92	79.462	Gasterosteus_aculeatus
ENSNBRG00000013839	chd6	79	73.255	ENSGGOG00000013123	CHD6	99	81.550	Gorilla_gorilla
ENSNBRG00000013839	chd6	99	93.900	ENSHBUG00000014701	chd6	83	98.394	Haplochromis_burtoni
ENSNBRG00000013839	chd6	79	72.538	ENSHGLG00000004548	CHD6	78	72.929	Heterocephalus_glaber_female
ENSNBRG00000013839	chd6	79	72.538	ENSHGLG00100006401	CHD6	78	72.929	Heterocephalus_glaber_male
ENSNBRG00000013839	chd6	97	71.262	ENSIPUG00000003692	chd6	90	75.260	Ictalurus_punctatus
ENSNBRG00000013839	chd6	79	71.492	ENSSTOG00000013382	CHD6	78	73.303	Ictidomys_tridecemlineatus
ENSNBRG00000013839	chd6	84	68.739	ENSLACG00000010881	CHD6	83	68.834	Latimeria_chalumnae
ENSNBRG00000013839	chd6	72	81.271	ENSLOCG00000007386	chd6	84	75.209	Lepisosteus_oculatus
ENSNBRG00000013839	chd6	79	72.904	ENSLAFG00000012144	CHD6	80	73.303	Loxodonta_africana
ENSNBRG00000013839	chd6	79	72.969	ENSMFAG00000032830	CHD6	99	81.550	Macaca_fascicularis
ENSNBRG00000013839	chd6	79	72.244	ENSMMUG00000020458	CHD6	99	81.550	Macaca_mulatta
ENSNBRG00000013839	chd6	79	72.969	ENSMNEG00000040847	CHD6	99	81.550	Macaca_nemestrina
ENSNBRG00000013839	chd6	79	72.969	ENSMLEG00000031965	CHD6	99	81.550	Mandrillus_leucophaeus
ENSNBRG00000013839	chd6	92	89.178	ENSMAMG00000013111	chd6	85	89.178	Mastacembelus_armatus
ENSNBRG00000013839	chd6	81	70.186	ENSMGAG00000001121	CHD6	81	71.026	Meleagris_gallopavo
ENSNBRG00000013839	chd6	79	72.247	ENSMICG00000016641	CHD6	99	81.365	Microcebus_murinus
ENSNBRG00000013839	chd6	72	79.186	ENSMODG00000000720	-	78	79.263	Monodelphis_domestica
ENSNBRG00000013839	chd6	80	72.449	MGP_CAROLIEiJ_G0024604	Chd6	91	77.390	Mus_caroli
ENSNBRG00000013839	chd6	80	72.513	ENSMUSG00000057133	Chd6	91	77.676	Mus_musculus
ENSNBRG00000013839	chd6	80	72.074	MGP_PahariEiJ_G0026048	Chd6	91	77.585	Mus_pahari
ENSNBRG00000013839	chd6	80	72.513	MGP_SPRETEiJ_G0025526	Chd6	91	77.676	Mus_spretus
ENSNBRG00000013839	chd6	79	73.524	ENSMPUG00000017695	CHD6	77	73.524	Mustela_putorius_furo
ENSNBRG00000013839	chd6	78	73.220	ENSMLUG00000016247	CHD6	75	73.089	Myotis_lucifugus
ENSNBRG00000013839	chd6	79	72.536	ENSNLEG00000006496	CHD6	78	72.495	Nomascus_leucogenys
ENSNBRG00000013839	chd6	78	70.991	ENSOPRG00000013376	-	78	71.037	Ochotona_princeps
ENSNBRG00000013839	chd6	83	91.381	ENSONIG00000000393	chd6	86	91.381	Oreochromis_niloticus
ENSNBRG00000013839	chd6	67	72.067	ENSOANG00000014347	CHD6	68	72.846	Ornithorhynchus_anatinus
ENSNBRG00000013839	chd6	79	71.793	ENSOCUG00000012394	CHD6	78	72.962	Oryctolagus_cuniculus
ENSNBRG00000013839	chd6	98	76.257	ENSORLG00020021891	chd6	94	94.545	Oryzias_latipes_hni
ENSNBRG00000013839	chd6	78	73.255	ENSOGAG00000002427	CHD6	75	73.238	Otolemur_garnettii
ENSNBRG00000013839	chd6	82	69.797	ENSOARG00000002597	CHD6	74	72.745	Ovis_aries
ENSNBRG00000013839	chd6	79	73.451	ENSPPRG00000014756	CHD6	78	73.368	Panthera_pardus
ENSNBRG00000013839	chd6	79	73.320	ENSPTIG00000011094	CHD6	78	73.238	Panthera_tigris_altaica
ENSNBRG00000013839	chd6	79	73.017	ENSPTRG00000013504	CHD6	98	81.550	Pan_troglodytes
ENSNBRG00000013839	chd6	79	73.587	ENSPANG00000025554	CHD6	99	81.550	Papio_anubis
ENSNBRG00000013839	chd6	85	85.553	ENSPMGG00000014877	chd6	93	85.601	Periophthalmus_magnuspinnatus
ENSNBRG00000013839	chd6	79	73.945	ENSPCIG00000028037	CHD6	78	73.760	Phascolarctos_cinereus
ENSNBRG00000013839	chd6	97	83.428	ENSPLAG00000003128	chd6	86	83.713	Poecilia_latipinna
ENSNBRG00000013839	chd6	97	83.004	ENSPREG00000022653	chd6	99	95.018	Poecilia_reticulata
ENSNBRG00000013839	chd6	79	72.244	ENSPPYG00000011016	CHD6	78	73.172	Pongo_abelii
ENSNBRG00000013839	chd6	79	72.183	ENSPCOG00000001089	CHD6	99	81.550	Propithecus_coquereli
ENSNBRG00000013839	chd6	100	96.626	ENSPNYG00000022516	chd6	100	96.626	Pundamilia_nyererei
ENSNBRG00000013839	chd6	97	70.293	ENSPNAG00000012825	chd6	91	71.599	Pygocentrus_nattereri
ENSNBRG00000013839	chd6	80	72.552	ENSRNOG00000016744	Chd6	78	72.680	Rattus_norvegicus
ENSNBRG00000013839	chd6	78	73.112	ENSSBOG00000022089	CHD6	98	81.550	Saimiri_boliviensis_boliviensis
ENSNBRG00000013839	chd6	79	73.360	ENSSHAG00000017072	CHD6	78	72.862	Sarcophilus_harrisii
ENSNBRG00000013839	chd6	99	62.479	ENSSFOG00015012920	chd6	99	61.844	Scleropages_formosus
ENSNBRG00000013839	chd6	79	73.743	ENSSSCG00000007360	CHD6	76	73.303	Sus_scrofa
ENSNBRG00000013839	chd6	81	72.848	ENSTGUG00000003179	CHD6	81	73.930	Taeniopygia_guttata
ENSNBRG00000013839	chd6	83	81.503	ENSTNIG00000017487	chd6	92	81.376	Tetraodon_nigroviridis
ENSNBRG00000013839	chd6	75	77.596	ENSTTRG00000013438	CHD6	73	77.469	Tursiops_truncatus
ENSNBRG00000013839	chd6	76	78.530	ENSUAMG00000024036	CHD6	94	84.078	Ursus_americanus
ENSNBRG00000013839	chd6	79	73.825	ENSUMAG00000002017	CHD6	94	84.078	Ursus_maritimus
ENSNBRG00000013839	chd6	76	67.244	ENSVPAG00000007941	CHD6	70	74.107	Vicugna_pacos
ENSNBRG00000013839	chd6	79	73.451	ENSVVUG00000029164	CHD6	78	73.368	Vulpes_vulpes
ENSNBRG00000013839	chd6	76	69.313	ENSXETG00000021445	chd6	78	65.682	Xenopus_tropicalis