EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000014059 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 3223 bases
Position: chrJH422312.1:4499540-4502762
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000018235	RRM_1	PF00076.22	3.5e-32	1	2
ENSNBRP00000018235	RRM_1	PF00076.22	3.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000018725	-	1248	-	ENSNBRP00000018235	415 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000014059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000014059's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000014059	pspc1	74	59.627	ENSNBRG00000017479	sfpq	50	60.252
ENSNBRG00000014059	pspc1	89	53.133	ENSNBRG00000017083	nono	69	60.559

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000014059	pspc1	92	61.675	ENSG00000121390	PSPC1	98	64.070	Homo_sapiens
ENSNBRG00000014059	pspc1	99	79.953	ENSAPOG00000015946	pspc1	99	80.425	Acanthochromis_polyacanthus
ENSNBRG00000014059	pspc1	92	62.000	ENSAMEG00000017420	PSPC1	74	64.411	Ailuropoda_melanoleuca
ENSNBRG00000014059	pspc1	95	88.384	ENSACIG00000018695	pspc1	78	88.131	Amphilophus_citrinellus
ENSNBRG00000014059	pspc1	99	76.620	ENSAOCG00000005279	pspc1	100	78.009	Amphiprion_ocellaris
ENSNBRG00000014059	pspc1	99	76.620	ENSAPEG00000015927	pspc1	100	78.009	Amphiprion_percula
ENSNBRG00000014059	pspc1	92	80.519	ENSATEG00000004878	pspc1	74	80.103	Anabas_testudineus
ENSNBRG00000014059	pspc1	66	67.025	ENSAPLG00000003643	SFPQ	54	67.025	Anas_platyrhynchos
ENSNBRG00000014059	pspc1	62	68.914	ENSAPLG00000006246	PSPC1	66	67.790	Anas_platyrhynchos
ENSNBRG00000014059	pspc1	77	69.394	ENSACAG00000002093	PSPC1	73	62.374	Anolis_carolinensis
ENSNBRG00000014059	pspc1	92	65.625	ENSANAG00000000059	PSPC1	98	63.544	Aotus_nancymaae
ENSNBRG00000014059	pspc1	99	97.101	ENSACLG00000027220	pspc1	87	97.101	Astatotilapia_calliptera
ENSNBRG00000014059	pspc1	91	64.394	ENSAMXG00000036881	pspc1	74	65.578	Astyanax_mexicanus
ENSNBRG00000014059	pspc1	92	67.717	ENSBTAG00000003934	PSPC1	73	66.234	Bos_taurus
ENSNBRG00000014059	pspc1	92	63.542	ENSCJAG00000004554	PSPC1	74	65.394	Callithrix_jacchus
ENSNBRG00000014059	pspc1	92	61.713	ENSCAFG00020002009	PSPC1	98	64.899	Canis_lupus_dingo
ENSNBRG00000014059	pspc1	92	62.690	ENSCHIG00000016708	PSPC1	73	65.641	Capra_hircus
ENSNBRG00000014059	pspc1	61	76.078	ENSTSYG00000032882	PSPC1	57	76.078	Carlito_syrichta
ENSNBRG00000014059	pspc1	92	61.713	ENSCPOG00000000395	PSPC1	98	65.385	Cavia_porcellus
ENSNBRG00000014059	pspc1	92	62.217	ENSCCAG00000033498	PSPC1	74	65.394	Cebus_capucinus
ENSNBRG00000014059	pspc1	76	69.207	ENSCATG00000036434	PSPC1	94	69.231	Cercocebus_atys
ENSNBRG00000014059	pspc1	64	66.667	ENSCLAG00000005241	PSPC1	58	73.004	Chinchilla_lanigera
ENSNBRG00000014059	pspc1	92	62.183	ENSCHOG00000008913	PSPC1	74	65.128	Choloepus_hoffmanni
ENSNBRG00000014059	pspc1	76	69.444	ENSCPBG00000020859	PSPC1	62	68.519	Chrysemys_picta_bellii
ENSNBRG00000014059	pspc1	63	72.308	ENSCANG00000018948	PSPC1	87	73.208	Colobus_angolensis_palliatus
ENSNBRG00000014059	pspc1	92	62.312	ENSCGRG00001018368	Pspc1	74	65.228	Cricetulus_griseus_chok1gshd
ENSNBRG00000014059	pspc1	92	62.312	ENSCGRG00000011724	Pspc1	74	65.228	Cricetulus_griseus_crigri
ENSNBRG00000014059	pspc1	93	71.891	ENSCVAG00000007679	-	77	75.126	Cyprinodon_variegatus
ENSNBRG00000014059	pspc1	92	61.869	ENSDARG00000006621	pspc1	74	64.541	Danio_rerio
ENSNBRG00000014059	pspc1	92	62.183	ENSDNOG00000011078	PSPC1	74	64.573	Dasypus_novemcinctus
ENSNBRG00000014059	pspc1	92	58.458	ENSDORG00000016050	Pspc1	73	61.307	Dipodomys_ordii
ENSNBRG00000014059	pspc1	67	66.667	ENSEBUG00000003964	-	67	53.887	Eptatretus_burgeri
ENSNBRG00000014059	pspc1	63	46.207	ENSEBUG00000010133	pspc1	76	46.207	Eptatretus_burgeri
ENSNBRG00000014059	pspc1	92	62.532	ENSEASG00005000119	PSPC1	98	64.394	Equus_asinus_asinus
ENSNBRG00000014059	pspc1	92	62.532	ENSECAG00000017286	PSPC1	98	64.394	Equus_caballus
ENSNBRG00000014059	pspc1	78	60.000	ENSEEUG00000011288	-	61	59.939	Erinaceus_europaeus
ENSNBRG00000014059	pspc1	95	63.768	ENSELUG00000003746	pspc1	99	64.578	Esox_lucius
ENSNBRG00000014059	pspc1	92	61.713	ENSFCAG00000027841	PSPC1	98	64.899	Felis_catus
ENSNBRG00000014059	pspc1	78	68.750	ENSFALG00000008750	PSPC1	74	60.759	Ficedula_albicollis
ENSNBRG00000014059	pspc1	92	61.929	ENSFDAG00000002617	PSPC1	73	64.872	Fukomys_damarensis
ENSNBRG00000014059	pspc1	89	65.691	ENSGMOG00000015074	pspc1	65	72.239	Gadus_morhua
ENSNBRG00000014059	pspc1	76	70.062	ENSGALG00000017142	PSPC1	62	69.136	Gallus_gallus
ENSNBRG00000014059	pspc1	94	71.990	ENSGAFG00000006327	pspc1	83	74.129	Gambusia_affinis
ENSNBRG00000014059	pspc1	92	69.018	ENSGACG00000014901	pspc1	97	75.000	Gasterosteus_aculeatus
ENSNBRG00000014059	pspc1	76	69.444	ENSGAGG00000019164	PSPC1	62	68.519	Gopherus_agassizii
ENSNBRG00000014059	pspc1	92	61.675	ENSGGOG00000003414	PSPC1	98	64.070	Gorilla_gorilla
ENSNBRG00000014059	pspc1	92	88.832	ENSHBUG00000001139	pspc1	75	89.203	Haplochromis_burtoni
ENSNBRG00000014059	pspc1	92	62.437	ENSHGLG00000018811	PSPC1	73	65.385	Heterocephalus_glaber_female
ENSNBRG00000014059	pspc1	63	77.567	ENSHGLG00100007962	PSPC1	80	77.567	Heterocephalus_glaber_male
ENSNBRG00000014059	pspc1	85	70.652	ENSHCOG00000013251	pspc1	88	70.277	Hippocampus_comes
ENSNBRG00000014059	pspc1	92	68.193	ENSIPUG00000013192	pspc1	74	69.289	Ictalurus_punctatus
ENSNBRG00000014059	pspc1	92	62.183	ENSSTOG00000026833	PSPC1	98	65.128	Ictidomys_tridecemlineatus
ENSNBRG00000014059	pspc1	76	68.902	ENSJJAG00000018334	Pspc1	74	62.935	Jaculus_jaculus
ENSNBRG00000014059	pspc1	79	71.084	ENSKMAG00000013525	-	77	72.892	Kryptolebias_marmoratus
ENSNBRG00000014059	pspc1	90	79.101	ENSLBEG00000004474	pspc1	83	76.289	Labrus_bergylta
ENSNBRG00000014059	pspc1	79	65.868	ENSLACG00000010762	PSPC1	62	67.674	Latimeria_chalumnae
ENSNBRG00000014059	pspc1	92	68.041	ENSLOCG00000010832	pspc1	73	68.557	Lepisosteus_oculatus
ENSNBRG00000014059	pspc1	92	62.121	ENSLAFG00000010968	PSPC1	74	65.051	Loxodonta_africana
ENSNBRG00000014059	pspc1	76	69.207	ENSMFAG00000032728	PSPC1	96	68.946	Macaca_fascicularis
ENSNBRG00000014059	pspc1	77	69.184	ENSMMUG00000020262	PSPC1	93	68.839	Macaca_mulatta
ENSNBRG00000014059	pspc1	76	69.207	ENSMNEG00000027401	PSPC1	82	64.090	Macaca_nemestrina
ENSNBRG00000014059	pspc1	61	68.539	ENSMLEG00000039043	PSPC1	62	73.004	Mandrillus_leucophaeus
ENSNBRG00000014059	pspc1	92	79.534	ENSMAMG00000004333	pspc1	76	80.311	Mastacembelus_armatus
ENSNBRG00000014059	pspc1	99	97.101	ENSMZEG00005005726	pspc1	87	97.101	Maylandia_zebra
ENSNBRG00000014059	pspc1	63	68.773	ENSMGAG00000015134	PSPC1	66	67.658	Meleagris_gallopavo
ENSNBRG00000014059	pspc1	92	66.234	ENSMAUG00000021067	Pspc1	82	66.234	Mesocricetus_auratus
ENSNBRG00000014059	pspc1	76	69.207	ENSMICG00000013970	PSPC1	98	63.591	Microcebus_murinus
ENSNBRG00000014059	pspc1	92	60.345	ENSMOCG00000006060	Pspc1	74	64.885	Microtus_ochrogaster
ENSNBRG00000014059	pspc1	96	58.519	ENSMMOG00000004352	pspc1	70	58.231	Mola_mola
ENSNBRG00000014059	pspc1	76	68.693	ENSMODG00000008029	PSPC1	62	64.070	Monodelphis_domestica
ENSNBRG00000014059	pspc1	92	76.823	ENSMALG00000008914	pspc1	78	76.823	Monopterus_albus
ENSNBRG00000014059	pspc1	92	60.197	MGP_CAROLIEiJ_G0019341	Pspc1	81	70.213	Mus_caroli
ENSNBRG00000014059	pspc1	92	60.197	ENSMUSG00000021938	Pspc1	80	70.213	Mus_musculus
ENSNBRG00000014059	pspc1	92	60.197	MGP_PahariEiJ_G0030359	Pspc1	81	70.213	Mus_pahari
ENSNBRG00000014059	pspc1	92	60.197	MGP_SPRETEiJ_G0020232	Pspc1	81	70.213	Mus_spretus
ENSNBRG00000014059	pspc1	76	69.207	ENSMPUG00000013347	PSPC1	74	64.912	Mustela_putorius_furo
ENSNBRG00000014059	pspc1	76	68.278	ENSMLUG00000017663	PSPC1	74	64.160	Myotis_lucifugus
ENSNBRG00000014059	pspc1	92	60.345	ENSNGAG00000011271	Pspc1	74	63.591	Nannospalax_galili
ENSNBRG00000014059	pspc1	76	69.207	ENSNLEG00000001294	PSPC1	74	64.090	Nomascus_leucogenys
ENSNBRG00000014059	pspc1	92	53.922	ENSODEG00000007817	-	72	59.845	Octodon_degus
ENSNBRG00000014059	pspc1	92	63.185	ENSODEG00000019012	-	73	63.517	Octodon_degus
ENSNBRG00000014059	pspc1	92	89.086	ENSONIG00000012010	pspc1	75	89.460	Oreochromis_niloticus
ENSNBRG00000014059	pspc1	77	60.000	ENSOANG00000011381	-	65	60.000	Ornithorhynchus_anatinus
ENSNBRG00000014059	pspc1	61	68.165	ENSOANG00000009017	-	66	72.624	Ornithorhynchus_anatinus
ENSNBRG00000014059	pspc1	76	69.207	ENSOCUG00000006153	PSPC1	74	64.070	Oryctolagus_cuniculus
ENSNBRG00000014059	pspc1	92	71.717	ENSORLG00000004232	-	76	75.000	Oryzias_latipes
ENSNBRG00000014059	pspc1	92	73.698	ENSORLG00020000578	PSPC1	76	75.260	Oryzias_latipes_hni
ENSNBRG00000014059	pspc1	92	71.970	ENSORLG00015017480	pspc1	76	75.260	Oryzias_latipes_hsok
ENSNBRG00000014059	pspc1	76	69.207	ENSOGAG00000012643	PSPC1	74	65.140	Otolemur_garnettii
ENSNBRG00000014059	pspc1	75	68.923	ENSOARG00000014163	PSPC1	66	70.497	Ovis_aries
ENSNBRG00000014059	pspc1	76	73.333	ENSPPAG00000009836	PSPC1	92	72.783	Pan_paniscus
ENSNBRG00000014059	pspc1	76	69.207	ENSPPRG00000008833	PSPC1	74	64.411	Panthera_pardus
ENSNBRG00000014059	pspc1	61	68.165	ENSPTIG00000016917	PSPC1	55	72.624	Panthera_tigris_altaica
ENSNBRG00000014059	pspc1	92	61.675	ENSPTRG00000005677	PSPC1	98	64.070	Pan_troglodytes
ENSNBRG00000014059	pspc1	76	69.207	ENSPANG00000001992	PSPC1	94	68.946	Papio_anubis
ENSNBRG00000014059	pspc1	99	65.166	ENSPKIG00000003578	pspc1	79	65.640	Paramormyrops_kingsleyae
ENSNBRG00000014059	pspc1	91	60.465	ENSPSIG00000005168	PSPC1	62	67.901	Pelodiscus_sinensis
ENSNBRG00000014059	pspc1	79	71.687	ENSPMGG00000015135	pspc1	92	71.687	Periophthalmus_magnuspinnatus
ENSNBRG00000014059	pspc1	92	60.345	ENSPEMG00000015214	Pspc1	74	63.591	Peromyscus_maniculatus_bairdii
ENSNBRG00000014059	pspc1	72	42.295	ENSPMAG00000004618	pspc1	91	42.295	Petromyzon_marinus
ENSNBRG00000014059	pspc1	76	68.902	ENSPCIG00000017680	PSPC1	74	63.568	Phascolarctos_cinereus
ENSNBRG00000014059	pspc1	90	73.924	ENSPFOG00000003362	pspc1	76	76.154	Poecilia_formosa
ENSNBRG00000014059	pspc1	92	74.000	ENSPLAG00000011540	pspc1	76	76.515	Poecilia_latipinna
ENSNBRG00000014059	pspc1	92	73.500	ENSPMEG00000008322	pspc1	76	76.010	Poecilia_mexicana
ENSNBRG00000014059	pspc1	92	73.250	ENSPREG00000007786	pspc1	76	75.758	Poecilia_reticulata
ENSNBRG00000014059	pspc1	76	69.207	ENSPPYG00000005186	PSPC1	81	63.591	Pongo_abelii
ENSNBRG00000014059	pspc1	67	62.048	ENSPCAG00000008314	-	54	69.136	Procavia_capensis
ENSNBRG00000014059	pspc1	83	65.266	ENSPCOG00000014364	PSPC1	77	63.366	Propithecus_coquereli
ENSNBRG00000014059	pspc1	76	68.902	ENSPVAG00000005036	PSPC1	73	64.646	Pteropus_vampyrus
ENSNBRG00000014059	pspc1	99	97.585	ENSPNYG00000008893	pspc1	87	97.585	Pundamilia_nyererei
ENSNBRG00000014059	pspc1	95	64.029	ENSPNAG00000016511	pspc1	83	68.367	Pygocentrus_nattereri
ENSNBRG00000014059	pspc1	92	61.084	ENSRNOG00000020782	Pspc1	83	64.250	Rattus_norvegicus
ENSNBRG00000014059	pspc1	76	69.207	ENSRBIG00000036057	PSPC1	91	72.615	Rhinopithecus_bieti
ENSNBRG00000014059	pspc1	76	69.207	ENSRROG00000036334	PSPC1	98	64.573	Rhinopithecus_roxellana
ENSNBRG00000014059	pspc1	63	72.308	ENSSBOG00000028172	PSPC1	96	66.667	Saimiri_boliviensis_boliviensis
ENSNBRG00000014059	pspc1	76	69.512	ENSSHAG00000004696	PSPC1	74	63.409	Sarcophilus_harrisii
ENSNBRG00000014059	pspc1	78	78.261	ENSSFOG00015001395	pspc1	69	78.683	Scleropages_formosus
ENSNBRG00000014059	pspc1	92	74.815	ENSSMAG00000001761	pspc1	93	71.244	Scophthalmus_maximus
ENSNBRG00000014059	pspc1	92	77.525	ENSSDUG00000010651	pspc1	72	82.097	Seriola_dumerili
ENSNBRG00000014059	pspc1	92	83.333	ENSSLDG00000004284	pspc1	80	84.115	Seriola_lalandi_dorsalis
ENSNBRG00000014059	pspc1	76	72.136	ENSSARG00000000888	PSPC1	73	64.872	Sorex_araneus
ENSNBRG00000014059	pspc1	91	64.737	ENSSPUG00000008550	PSPC1	74	62.850	Sphenodon_punctatus
ENSNBRG00000014059	pspc1	92	80.457	ENSSPAG00000001921	pspc1	73	83.033	Stegastes_partitus
ENSNBRG00000014059	pspc1	92	61.929	ENSSSCG00000009569	PSPC1	99	64.394	Sus_scrofa
ENSNBRG00000014059	pspc1	76	70.062	ENSTGUG00000011295	PSPC1	69	69.136	Taeniopygia_guttata
ENSNBRG00000014059	pspc1	92	71.134	ENSTRUG00000011335	pspc1	75	71.649	Takifugu_rubripes
ENSNBRG00000014059	pspc1	92	66.749	ENSTNIG00000010358	pspc1	79	70.370	Tetraodon_nigroviridis
ENSNBRG00000014059	pspc1	76	61.890	ENSTBEG00000002361	PSPC1	74	57.500	Tupaia_belangeri
ENSNBRG00000014059	pspc1	92	62.121	ENSTTRG00000003343	PSPC1	73	65.051	Tursiops_truncatus
ENSNBRG00000014059	pspc1	79	67.365	ENSUAMG00000012309	PSPC1	92	67.365	Ursus_americanus
ENSNBRG00000014059	pspc1	76	68.902	ENSUMAG00000013993	PSPC1	91	72.308	Ursus_maritimus
ENSNBRG00000014059	pspc1	61	68.539	ENSVPAG00000010029	PSPC1	66	73.004	Vicugna_pacos
ENSNBRG00000014059	pspc1	92	61.750	ENSVVUG00000006414	PSPC1	99	64.912	Vulpes_vulpes
ENSNBRG00000014059	pspc1	94	73.219	ENSXCOG00000017438	pspc1	95	75.373	Xiphophorus_couchianus
ENSNBRG00000014059	pspc1	94	73.464	ENSXMAG00000007929	pspc1	95	75.622	Xiphophorus_maculatus