EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000015372 (Gene tree)
Gene ID: 102792244
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: protein PAT1 homolog 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 18499 bases
Position: chrJH422518.1:410104-428602
Accession: 102792244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000020091	PAT1	PF09770.9	2.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000020625	-	2019	XM_006808769	ENSNBRP00000020091	672 (aa)	XP_006808832	-

Gene Model

Click here to download ENSNBRG00000015372's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000015372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000015372	patl1	75	93.333	ENSAPOG00000021290	patl1	61	93.333	Acanthochromis_polyacanthus
ENSNBRG00000015372	patl1	93	52.000	ENSACIG00000005182	patl1	62	95.152	Amphilophus_citrinellus
ENSNBRG00000015372	patl1	69	93.939	ENSAOCG00000021993	patl1	59	93.939	Amphiprion_ocellaris
ENSNBRG00000015372	patl1	75	93.939	ENSAPEG00000021391	patl1	70	81.726	Amphiprion_percula
ENSNBRG00000015372	patl1	93	51.897	ENSATEG00000002230	patl1	66	91.515	Anabas_testudineus
ENSNBRG00000015372	patl1	75	98.788	ENSACLG00000005144	patl1	66	98.788	Astatotilapia_calliptera
ENSNBRG00000015372	patl1	75	83.030	ENSAMXG00000010731	patl1	64	83.030	Astyanax_mexicanus
ENSNBRG00000015372	patl1	73	47.020	ENSCPOG00000006827	PATL1	53	47.020	Cavia_porcellus
ENSNBRG00000015372	patl1	74	44.000	ENSCANG00000039197	PATL1	54	67.308	Colobus_angolensis_palliatus
ENSNBRG00000015372	patl1	75	90.303	ENSCSEG00000008261	patl1	70	78.680	Cynoglossus_semilaevis
ENSNBRG00000015372	patl1	82	74.312	ENSCVAG00000006664	patl1	69	74.312	Cyprinodon_variegatus
ENSNBRG00000015372	patl1	93	49.088	ENSDARG00000017423	patl1	65	86.061	Danio_rerio
ENSNBRG00000015372	patl1	75	44.000	ENSDORG00000000237	Patl1	58	44.000	Dipodomys_ordii
ENSNBRG00000015372	patl1	92	41.040	ENSEASG00005007963	PATL1	61	44.000	Equus_asinus_asinus
ENSNBRG00000015372	patl1	92	41.040	ENSECAG00000011411	PATL1	51	44.000	Equus_caballus
ENSNBRG00000015372	patl1	75	83.030	ENSELUG00000024249	patl1	65	83.030	Esox_lucius
ENSNBRG00000015372	patl1	74	45.665	ENSFALG00000012150	PATL1	57	45.665	Ficedula_albicollis
ENSNBRG00000015372	patl1	93	56.927	ENSFHEG00000017790	patl1	66	85.455	Fundulus_heteroclitus
ENSNBRG00000015372	patl1	93	56.438	ENSGAFG00000006508	patl1	69	73.604	Gambusia_affinis
ENSNBRG00000015372	patl1	77	91.566	ENSGACG00000016448	patl1	59	91.566	Gasterosteus_aculeatus
ENSNBRG00000015372	patl1	75	46.286	ENSGAGG00000004461	PATL1	57	46.286	Gopherus_agassizii
ENSNBRG00000015372	patl1	75	98.788	ENSHBUG00000005365	patl1	66	98.788	Haplochromis_burtoni
ENSNBRG00000015372	patl1	93	50.668	ENSHCOG00000001898	patl1	66	89.091	Hippocampus_comes
ENSNBRG00000015372	patl1	93	54.083	ENSKMAG00000020848	patl1	70	79.188	Kryptolebias_marmoratus
ENSNBRG00000015372	patl1	93	54.826	ENSLBEG00000023617	patl1	70	82.234	Labrus_bergylta
ENSNBRG00000015372	patl1	75	90.303	ENSMAMG00000003950	patl1	66	90.303	Mastacembelus_armatus
ENSNBRG00000015372	patl1	75	98.788	ENSMZEG00005013404	patl1	66	98.788	Maylandia_zebra
ENSNBRG00000015372	patl1	92	40.230	ENSMICG00000004172	PATL1	59	66.667	Microcebus_murinus
ENSNBRG00000015372	patl1	54	85.714	ENSMMOG00000013711	patl1	53	93.333	Mola_mola
ENSNBRG00000015372	patl1	72	48.344	ENSMODG00000020201	PATL1	58	44.571	Monodelphis_domestica
ENSNBRG00000015372	patl1	87	59.547	ENSMALG00000018706	patl1	65	90.909	Monopterus_albus
ENSNBRG00000015372	patl1	75	44.571	MGP_CAROLIEiJ_G0022739	Patl1	58	44.571	Mus_caroli
ENSNBRG00000015372	patl1	75	44.571	ENSMUSG00000046139	Patl1	58	44.571	Mus_musculus
ENSNBRG00000015372	patl1	75	44.571	MGP_PahariEiJ_G0014233	Patl1	58	44.571	Mus_pahari
ENSNBRG00000015372	patl1	75	44.571	MGP_SPRETEiJ_G0023652	Patl1	58	44.571	Mus_spretus
ENSNBRG00000015372	patl1	69	43.293	ENSODEG00000001792	PATL1	51	58.594	Octodon_degus
ENSNBRG00000015372	patl1	75	98.788	ENSONIG00000004170	patl1	66	98.788	Oreochromis_niloticus
ENSNBRG00000015372	patl1	93	32.486	ENSPTRG00000003697	PATL1	62	44.000	Pan_troglodytes
ENSNBRG00000015372	patl1	93	51.724	ENSPKIG00000016224	patl1	64	84.848	Paramormyrops_kingsleyae
ENSNBRG00000015372	patl1	75	45.143	ENSPSIG00000016206	PATL1	64	40.517	Pelodiscus_sinensis
ENSNBRG00000015372	patl1	93	55.211	ENSPMGG00000002644	patl1	64	85.455	Periophthalmus_magnuspinnatus
ENSNBRG00000015372	patl1	73	47.682	ENSPCIG00000010852	PATL1	57	44.000	Phascolarctos_cinereus
ENSNBRG00000015372	patl1	93	56.027	ENSPFOG00000007768	patl1	76	73.604	Poecilia_formosa
ENSNBRG00000015372	patl1	93	55.753	ENSPLAG00000018465	patl1	69	73.604	Poecilia_latipinna
ENSNBRG00000015372	patl1	93	56.164	ENSPMEG00000006555	patl1	69	73.604	Poecilia_mexicana
ENSNBRG00000015372	patl1	96	54.993	ENSPREG00000003874	patl1	76	68.493	Poecilia_reticulata
ENSNBRG00000015372	patl1	75	98.788	ENSPNYG00000018936	patl1	71	98.788	Pundamilia_nyererei
ENSNBRG00000015372	patl1	93	50.070	ENSPNAG00000017907	patl1	64	84.242	Pygocentrus_nattereri
ENSNBRG00000015372	patl1	75	44.571	ENSSHAG00000004309	PATL1	58	44.571	Sarcophilus_harrisii
ENSNBRG00000015372	patl1	93	50.071	ENSSFOG00015009614	patl1	64	85.455	Scleropages_formosus
ENSNBRG00000015372	patl1	75	92.121	ENSSMAG00000009482	patl1	71	80.203	Scophthalmus_maximus
ENSNBRG00000015372	patl1	93	53.430	ENSSDUG00000005362	patl1	71	81.218	Seriola_dumerili
ENSNBRG00000015372	patl1	93	53.369	ENSSLDG00000019146	patl1	71	81.218	Seriola_lalandi_dorsalis
ENSNBRG00000015372	patl1	75	95.758	ENSSPAG00000003187	patl1	63	95.758	Stegastes_partitus
ENSNBRG00000015372	patl1	75	45.665	ENSTGUG00000006222	PATL1	57	45.665	Taeniopygia_guttata
ENSNBRG00000015372	patl1	93	52.730	ENSTRUG00000000709	patl1	90	45.917	Takifugu_rubripes
ENSNBRG00000015372	patl1	60	89.831	ENSXCOG00000010808	patl1	52	93.443	Xiphophorus_couchianus
ENSNBRG00000015372	patl1	93	55.068	ENSXMAG00000013834	patl1	69	73.604	Xiphophorus_maculatus