EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000015770 (Gene tree)
Gene ID: 102778252
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: U6 snRNA-associated Sm-like protein LSm7-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 2113 bases
Position: chrJH422373.1:1457135-1459247
Accession: 102778252
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000020493	LSM	PF01423.22	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000021047	-	1309	XM_006803287	ENSNBRP00000020493	116 (aa)	XP_006803350	UPI0003EC4B3F

Gene Model

Click here to download ENSNBRG00000015770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000015770's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000015770	lsm7	53	38.710	ENSNBRG00000008674	snrpg	71	38.710
ENSNBRG00000015770	lsm7	87	100.000	ENSNBRG00000001237	-	81	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000015770	lsm7	87	94.059	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSNBRG00000015770	lsm7	84	95.876	ENSAPOG00000015573	lsm7	84	95.876	Acanthochromis_polyacanthus
ENSNBRG00000015770	lsm7	88	93.137	ENSAMEG00000005484	LSM7	99	93.137	Ailuropoda_melanoleuca
ENSNBRG00000015770	lsm7	84	100.000	ENSACIG00000006498	lsm7	77	100.000	Amphilophus_citrinellus
ENSNBRG00000015770	lsm7	88	98.039	ENSAOCG00000001077	lsm7	93	98.039	Amphiprion_ocellaris
ENSNBRG00000015770	lsm7	88	98.039	ENSAPEG00000000694	lsm7	98	99.010	Amphiprion_percula
ENSNBRG00000015770	lsm7	96	93.694	ENSAPEG00000024447	lsm7	98	93.694	Amphiprion_percula
ENSNBRG00000015770	lsm7	87	99.010	ENSATEG00000008557	lsm7	98	99.010	Anabas_testudineus
ENSNBRG00000015770	lsm7	87	94.059	ENSANAG00000037196	-	98	94.059	Aotus_nancymaae
ENSNBRG00000015770	lsm7	87	85.149	ENSANAG00000022222	-	98	85.149	Aotus_nancymaae
ENSNBRG00000015770	lsm7	87	100.000	ENSACLG00000021021	lsm7	98	100.000	Astatotilapia_calliptera
ENSNBRG00000015770	lsm7	87	97.030	ENSAMXG00000037622	lsm7	98	97.030	Astyanax_mexicanus
ENSNBRG00000015770	lsm7	87	94.059	ENSBTAG00000004521	LSM7	98	94.059	Bos_taurus
ENSNBRG00000015770	lsm7	88	56.863	WBGene00003081	lsm-7	98	56.863	Caenorhabditis_elegans
ENSNBRG00000015770	lsm7	88	93.137	ENSCAFG00000019409	LSM7	99	93.137	Canis_familiaris
ENSNBRG00000015770	lsm7	91	90.476	ENSCAFG00020018168	LSM7	78	88.679	Canis_lupus_dingo
ENSNBRG00000015770	lsm7	88	94.118	ENSCHIG00000023663	LSM7	99	94.118	Capra_hircus
ENSNBRG00000015770	lsm7	61	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSNBRG00000015770	lsm7	87	94.059	ENSCPOG00000014025	LSM7	100	94.059	Cavia_porcellus
ENSNBRG00000015770	lsm7	87	94.059	ENSCCAG00000035456	LSM7	99	94.059	Cebus_capucinus
ENSNBRG00000015770	lsm7	87	94.059	ENSCATG00000023543	LSM7	98	94.059	Cercocebus_atys
ENSNBRG00000015770	lsm7	87	94.059	ENSCLAG00000011635	LSM7	98	94.059	Chinchilla_lanigera
ENSNBRG00000015770	lsm7	87	94.059	ENSCSAG00000011599	LSM7	98	94.059	Chlorocebus_sabaeus
ENSNBRG00000015770	lsm7	62	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSNBRG00000015770	lsm7	83	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSNBRG00000015770	lsm7	87	94.059	ENSCANG00000035525	LSM7	98	94.059	Colobus_angolensis_palliatus
ENSNBRG00000015770	lsm7	87	93.069	ENSCGRG00001000807	-	98	93.069	Cricetulus_griseus_chok1gshd
ENSNBRG00000015770	lsm7	78	83.333	ENSCGRG00001016005	-	92	83.333	Cricetulus_griseus_chok1gshd
ENSNBRG00000015770	lsm7	89	93.204	ENSCGRG00000014355	-	99	93.204	Cricetulus_griseus_crigri
ENSNBRG00000015770	lsm7	78	83.333	ENSCGRG00000006821	-	92	83.333	Cricetulus_griseus_crigri
ENSNBRG00000015770	lsm7	96	91.964	ENSCSEG00000014900	lsm7	93	91.964	Cynoglossus_semilaevis
ENSNBRG00000015770	lsm7	89	96.117	ENSCVAG00000021091	lsm7	95	96.117	Cyprinodon_variegatus
ENSNBRG00000015770	lsm7	87	98.020	ENSDARG00000058328	lsm7	98	98.020	Danio_rerio
ENSNBRG00000015770	lsm7	87	92.079	ENSDORG00000024460	Lsm7	99	92.079	Dipodomys_ordii
ENSNBRG00000015770	lsm7	84	72.449	FBgn0261068	LSm7	89	72.449	Drosophila_melanogaster
ENSNBRG00000015770	lsm7	88	91.176	ENSETEG00000012788	LSM7	100	91.176	Echinops_telfairi
ENSNBRG00000015770	lsm7	72	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSNBRG00000015770	lsm7	88	85.294	ENSEBUG00000016992	lsm7	98	85.294	Eptatretus_burgeri
ENSNBRG00000015770	lsm7	80	90.323	ENSECAG00000001440	LSM7	65	90.099	Equus_caballus
ENSNBRG00000015770	lsm7	87	93.069	ENSFCAG00000003445	LSM7	98	93.069	Felis_catus
ENSNBRG00000015770	lsm7	87	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSNBRG00000015770	lsm7	83	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSNBRG00000015770	lsm7	89	96.117	ENSFHEG00000006349	lsm7	92	96.117	Fundulus_heteroclitus
ENSNBRG00000015770	lsm7	88	97.059	ENSGMOG00000013320	lsm7	99	97.059	Gadus_morhua
ENSNBRG00000015770	lsm7	87	98.020	ENSGAFG00000013902	lsm7	98	98.020	Gambusia_affinis
ENSNBRG00000015770	lsm7	89	97.087	ENSGACG00000010390	lsm7	100	97.087	Gasterosteus_aculeatus
ENSNBRG00000015770	lsm7	87	94.059	ENSGGOG00000010172	LSM7	98	94.059	Gorilla_gorilla
ENSNBRG00000015770	lsm7	100	100.000	ENSHBUG00000004616	lsm7	100	100.000	Haplochromis_burtoni
ENSNBRG00000015770	lsm7	87	94.059	ENSHGLG00000010587	LSM7	98	94.059	Heterocephalus_glaber_female
ENSNBRG00000015770	lsm7	87	94.059	ENSHGLG00100000852	LSM7	98	94.059	Heterocephalus_glaber_male
ENSNBRG00000015770	lsm7	87	100.000	ENSHCOG00000020252	lsm7	100	100.000	Hippocampus_comes
ENSNBRG00000015770	lsm7	87	95.050	ENSIPUG00000024724	lsm7	98	95.050	Ictalurus_punctatus
ENSNBRG00000015770	lsm7	91	92.381	ENSSTOG00000028372	LSM7	99	94.059	Ictidomys_tridecemlineatus
ENSNBRG00000015770	lsm7	86	94.000	ENSJJAG00000001936	Lsm7	97	94.000	Jaculus_jaculus
ENSNBRG00000015770	lsm7	87	98.020	ENSKMAG00000022151	lsm7	98	98.020	Kryptolebias_marmoratus
ENSNBRG00000015770	lsm7	87	99.010	ENSLBEG00000005203	lsm7	98	99.010	Labrus_bergylta
ENSNBRG00000015770	lsm7	80	95.699	ENSLACG00000015700	LSM7	99	94.118	Latimeria_chalumnae
ENSNBRG00000015770	lsm7	88	96.078	ENSLOCG00000004356	lsm7	99	96.078	Lepisosteus_oculatus
ENSNBRG00000015770	lsm7	89	93.204	ENSLAFG00000029302	LSM7	100	93.204	Loxodonta_africana
ENSNBRG00000015770	lsm7	87	94.059	ENSMFAG00000044572	LSM7	98	94.059	Macaca_fascicularis
ENSNBRG00000015770	lsm7	87	94.059	ENSMMUG00000000452	LSM7	99	94.059	Macaca_mulatta
ENSNBRG00000015770	lsm7	87	94.059	ENSMNEG00000004393	LSM7	98	94.059	Macaca_nemestrina
ENSNBRG00000015770	lsm7	87	94.059	ENSMLEG00000030852	LSM7	100	94.059	Mandrillus_leucophaeus
ENSNBRG00000015770	lsm7	87	100.000	ENSMAMG00000005410	lsm7	98	100.000	Mastacembelus_armatus
ENSNBRG00000015770	lsm7	87	100.000	ENSMZEG00005028055	lsm7	98	100.000	Maylandia_zebra
ENSNBRG00000015770	lsm7	91	92.453	ENSMGAG00000000750	LSM7	91	92.453	Meleagris_gallopavo
ENSNBRG00000015770	lsm7	88	93.137	ENSMAUG00000009276	Lsm7	99	93.137	Mesocricetus_auratus
ENSNBRG00000015770	lsm7	87	94.059	ENSMICG00000028619	-	98	94.059	Microcebus_murinus
ENSNBRG00000015770	lsm7	87	94.059	ENSMICG00000009988	-	98	94.059	Microcebus_murinus
ENSNBRG00000015770	lsm7	87	93.069	ENSMOCG00000016925	Lsm7	98	93.069	Microtus_ochrogaster
ENSNBRG00000015770	lsm7	87	99.010	ENSMMOG00000019645	lsm7	96	99.010	Mola_mola
ENSNBRG00000015770	lsm7	87	95.050	ENSMODG00000004722	LSM7	98	95.050	Monodelphis_domestica
ENSNBRG00000015770	lsm7	87	100.000	ENSMALG00000014511	lsm7	78	100.000	Monopterus_albus
ENSNBRG00000015770	lsm7	86	93.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	93.000	Mus_caroli
ENSNBRG00000015770	lsm7	86	93.000	ENSMUSG00000035215	Lsm7	97	93.000	Mus_musculus
ENSNBRG00000015770	lsm7	86	93.000	MGP_PahariEiJ_G0031020	Lsm7	97	93.000	Mus_pahari
ENSNBRG00000015770	lsm7	86	93.000	MGP_SPRETEiJ_G0016425	Lsm7	97	93.000	Mus_spretus
ENSNBRG00000015770	lsm7	88	93.137	ENSMLUG00000013097	-	99	93.137	Myotis_lucifugus
ENSNBRG00000015770	lsm7	84	88.660	ENSMLUG00000024002	-	90	88.660	Myotis_lucifugus
ENSNBRG00000015770	lsm7	87	92.079	ENSNGAG00000021637	Lsm7	98	92.079	Nannospalax_galili
ENSNBRG00000015770	lsm7	87	94.059	ENSNLEG00000002265	LSM7	98	94.059	Nomascus_leucogenys
ENSNBRG00000015770	lsm7	87	74.257	ENSODEG00000008190	-	98	74.257	Octodon_degus
ENSNBRG00000015770	lsm7	87	94.059	ENSODEG00000013590	-	98	94.059	Octodon_degus
ENSNBRG00000015770	lsm7	87	87.129	ENSODEG00000018769	-	98	87.129	Octodon_degus
ENSNBRG00000015770	lsm7	93	94.444	ENSONIG00000001801	lsm7	93	94.444	Oreochromis_niloticus
ENSNBRG00000015770	lsm7	91	97.143	ENSORLG00000023951	lsm7	98	99.010	Oryzias_latipes
ENSNBRG00000015770	lsm7	88	99.020	ENSORLG00020022226	lsm7	98	99.010	Oryzias_latipes_hni
ENSNBRG00000015770	lsm7	91	97.143	ENSORLG00015020044	lsm7	95	97.087	Oryzias_latipes_hsok
ENSNBRG00000015770	lsm7	89	97.087	ENSOMEG00000012806	lsm7	98	99.010	Oryzias_melastigma
ENSNBRG00000015770	lsm7	84	82.653	ENSOGAG00000024373	-	96	82.653	Otolemur_garnettii
ENSNBRG00000015770	lsm7	88	92.157	ENSOGAG00000000144	-	100	92.157	Otolemur_garnettii
ENSNBRG00000015770	lsm7	88	94.118	ENSOARG00000014013	LSM7	99	94.118	Ovis_aries
ENSNBRG00000015770	lsm7	87	94.059	ENSPPAG00000026500	LSM7	98	94.059	Pan_paniscus
ENSNBRG00000015770	lsm7	87	93.069	ENSPPRG00000008624	LSM7	98	93.069	Panthera_pardus
ENSNBRG00000015770	lsm7	80	93.548	ENSPTIG00000016252	LSM7	98	93.069	Panthera_tigris_altaica
ENSNBRG00000015770	lsm7	87	94.059	ENSPTRG00000010233	LSM7	98	94.059	Pan_troglodytes
ENSNBRG00000015770	lsm7	87	94.059	ENSPANG00000020668	LSM7	98	94.059	Papio_anubis
ENSNBRG00000015770	lsm7	98	90.351	ENSPKIG00000011325	lsm7	98	97.030	Paramormyrops_kingsleyae
ENSNBRG00000015770	lsm7	87	96.040	ENSPSIG00000017149	LSM7	89	96.040	Pelodiscus_sinensis
ENSNBRG00000015770	lsm7	87	99.010	ENSPMGG00000006498	lsm7	98	99.010	Periophthalmus_magnuspinnatus
ENSNBRG00000015770	lsm7	87	95.050	ENSPCIG00000030454	LSM7	99	95.050	Phascolarctos_cinereus
ENSNBRG00000015770	lsm7	97	91.071	ENSPFOG00000012467	lsm7	98	91.071	Poecilia_formosa
ENSNBRG00000015770	lsm7	91	93.396	ENSPLAG00000000252	lsm7	95	95.146	Poecilia_latipinna
ENSNBRG00000015770	lsm7	97	91.071	ENSPMEG00000000587	lsm7	95	95.146	Poecilia_mexicana
ENSNBRG00000015770	lsm7	69	74.074	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSNBRG00000015770	lsm7	89	72.816	ENSPPYG00000009348	-	68	72.816	Pongo_abelii
ENSNBRG00000015770	lsm7	87	94.059	ENSPCOG00000017177	LSM7	99	94.059	Propithecus_coquereli
ENSNBRG00000015770	lsm7	87	100.000	ENSPNYG00000006938	lsm7	98	100.000	Pundamilia_nyererei
ENSNBRG00000015770	lsm7	87	97.030	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSNBRG00000015770	lsm7	86	94.000	ENSRNOG00000019552	Lsm7	97	94.000	Rattus_norvegicus
ENSNBRG00000015770	lsm7	87	94.059	ENSRBIG00000035978	LSM7	98	94.059	Rhinopithecus_bieti
ENSNBRG00000015770	lsm7	87	94.059	ENSRROG00000034044	LSM7	98	94.059	Rhinopithecus_roxellana
ENSNBRG00000015770	lsm7	74	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSNBRG00000015770	lsm7	87	94.059	ENSSBOG00000034899	LSM7	98	94.059	Saimiri_boliviensis_boliviensis
ENSNBRG00000015770	lsm7	87	95.050	ENSSFOG00015006728	lsm7	98	95.050	Scleropages_formosus
ENSNBRG00000015770	lsm7	92	95.327	ENSSMAG00000004195	lsm7	97	96.226	Scophthalmus_maximus
ENSNBRG00000015770	lsm7	87	99.010	ENSSDUG00000001863	lsm7	98	99.010	Seriola_dumerili
ENSNBRG00000015770	lsm7	87	99.010	ENSSLDG00000016339	lsm7	98	99.010	Seriola_lalandi_dorsalis
ENSNBRG00000015770	lsm7	90	97.115	ENSSPAG00000015221	lsm7	98	99.010	Stegastes_partitus
ENSNBRG00000015770	lsm7	87	94.059	ENSSSCG00000013463	LSM7	99	94.059	Sus_scrofa
ENSNBRG00000015770	lsm7	87	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSNBRG00000015770	lsm7	87	97.030	ENSTRUG00000022913	lsm7	98	97.030	Takifugu_rubripes
ENSNBRG00000015770	lsm7	87	97.030	ENSTNIG00000015525	lsm7	98	97.030	Tetraodon_nigroviridis
ENSNBRG00000015770	lsm7	60	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSNBRG00000015770	lsm7	91	89.623	ENSUAMG00000000912	LSM7	88	89.623	Ursus_americanus
ENSNBRG00000015770	lsm7	89	91.262	ENSUMAG00000006556	LSM7	80	92.157	Ursus_maritimus
ENSNBRG00000015770	lsm7	61	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSNBRG00000015770	lsm7	87	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSNBRG00000015770	lsm7	87	98.020	ENSXCOG00000002572	lsm7	99	98.020	Xiphophorus_couchianus
ENSNBRG00000015770	lsm7	91	94.340	ENSXMAG00000018630	lsm7	98	98.020	Xiphophorus_maculatus