EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000016273 (Gene tree)
Gene ID: 102778594
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 9109 bases
Position: chrJH422286.1:9714988-9724096
Accession: 102778594
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000021324	ResIII	PF04851.15	5.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000021901	-	2325	XM_006788579	ENSNBRP00000021324	774 (aa)	XP_006788642	-

Gene Model

Click here to download ENSNBRG00000016273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000016273's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000016273	smarcal1	84	62.712	ENSG00000138375	SMARCAL1	99	67.702	Homo_sapiens
ENSNBRG00000016273	smarcal1	97	87.815	ENSAPOG00000020156	SMARCAL1	87	87.815	Acanthochromis_polyacanthus
ENSNBRG00000016273	smarcal1	100	91.731	ENSACIG00000001500	smarcal1	99	91.731	Amphilophus_citrinellus
ENSNBRG00000016273	smarcal1	97	83.267	ENSAOCG00000014266	SMARCAL1	94	87.395	Amphiprion_ocellaris
ENSNBRG00000016273	smarcal1	97	83.533	ENSAPEG00000015861	SMARCAL1	93	87.535	Amphiprion_percula
ENSNBRG00000016273	smarcal1	97	85.873	ENSATEG00000020624	SMARCAL1	93	85.873	Anabas_testudineus
ENSNBRG00000016273	smarcal1	89	63.545	ENSAPLG00000009864	SMARCAL1	71	63.545	Anas_platyrhynchos
ENSNBRG00000016273	smarcal1	86	66.466	ENSACAG00000004612	SMARCAL1	67	66.466	Anolis_carolinensis
ENSNBRG00000016273	smarcal1	96	98.975	ENSACLG00000015990	SMARCAL1	93	98.703	Astatotilapia_calliptera
ENSNBRG00000016273	smarcal1	97	67.643	ENSAMXG00000003350	smarcal1	93	67.643	Astyanax_mexicanus
ENSNBRG00000016273	smarcal1	85	67.634	ENSCPBG00000013599	SMARCAL1	66	67.634	Chrysemys_picta_bellii
ENSNBRG00000016273	smarcal1	82	47.812	ENSCING00000009308	-	100	47.812	Ciona_intestinalis
ENSNBRG00000016273	smarcal1	97	79.696	ENSCSEG00000010785	SMARCAL1	95	79.696	Cynoglossus_semilaevis
ENSNBRG00000016273	smarcal1	97	74.634	ENSCVAG00000018780	SMARCAL1	93	74.634	Cyprinodon_variegatus
ENSNBRG00000016273	smarcal1	80	55.258	ENSEBUG00000011906	SMARCAL1	99	55.258	Eptatretus_burgeri
ENSNBRG00000016273	smarcal1	85	77.458	ENSELUG00000010440	-	67	74.501	Esox_lucius
ENSNBRG00000016273	smarcal1	89	63.965	ENSFALG00000003981	SMARCAL1	71	63.965	Ficedula_albicollis
ENSNBRG00000016273	smarcal1	97	81.766	ENSFHEG00000008380	SMARCAL1	93	81.766	Fundulus_heteroclitus
ENSNBRG00000016273	smarcal1	77	74.704	ENSGMOG00000010034	smarcal1	100	74.704	Gadus_morhua
ENSNBRG00000016273	smarcal1	89	62.899	ENSGALG00000011475	RPL37A	71	62.899	Gallus_gallus
ENSNBRG00000016273	smarcal1	91	83.178	ENSGACG00000006073	SMARCAL1	100	84.916	Gasterosteus_aculeatus
ENSNBRG00000016273	smarcal1	86	67.523	ENSGAGG00000015660	SMARCAL1	73	67.523	Gopherus_agassizii
ENSNBRG00000016273	smarcal1	97	98.127	ENSHBUG00000002973	smarcal1	93	98.127	Haplochromis_burtoni
ENSNBRG00000016273	smarcal1	97	72.482	ENSHCOG00000017921	smarcal1	95	72.482	Hippocampus_comes
ENSNBRG00000016273	smarcal1	97	82.430	ENSKMAG00000012023	SMARCAL1	96	72.410	Kryptolebias_marmoratus
ENSNBRG00000016273	smarcal1	98	81.127	ENSLBEG00000022915	smarcal1	99	81.127	Labrus_bergylta
ENSNBRG00000016273	smarcal1	95	83.734	ENSLBEG00000003493	smarcal1	90	83.734	Labrus_bergylta
ENSNBRG00000016273	smarcal1	90	59.801	ENSLACG00000010974	SMARCAL1	79	56.750	Latimeria_chalumnae
ENSNBRG00000016273	smarcal1	97	76.621	ENSLOCG00000009637	smarcal1	88	76.621	Lepisosteus_oculatus
ENSNBRG00000016273	smarcal1	97	86.533	ENSMAMG00000000828	SMARCAL1	95	86.533	Mastacembelus_armatus
ENSNBRG00000016273	smarcal1	96	98.829	ENSMZEG00005007660	SMARCAL1	93	98.559	Maylandia_zebra
ENSNBRG00000016273	smarcal1	86	64.978	ENSMGAG00000011658	SMARCAL1	71	64.978	Meleagris_gallopavo
ENSNBRG00000016273	smarcal1	98	77.763	ENSMMOG00000003842	smarcal1	95	77.763	Mola_mola
ENSNBRG00000016273	smarcal1	84	62.290	ENSMODG00000015544	SMARCAL1	68	62.290	Monodelphis_domestica
ENSNBRG00000016273	smarcal1	82	63.764	ENSMEUG00000004395	SMARCAL1	74	63.053	Notamacropus_eugenii
ENSNBRG00000016273	smarcal1	97	95.238	ENSONIG00000009036	smarcal1	95	96.154	Oreochromis_niloticus
ENSNBRG00000016273	smarcal1	97	71.961	ENSORLG00000016455	SMARCAL1	77	82.489	Oryzias_latipes
ENSNBRG00000016273	smarcal1	97	71.841	ENSORLG00020001610	SMARCAL1	77	82.489	Oryzias_latipes_hni
ENSNBRG00000016273	smarcal1	97	73.212	ENSORLG00015001865	SMARCAL1	92	73.212	Oryzias_latipes_hsok
ENSNBRG00000016273	smarcal1	97	76.971	ENSOMEG00000001845	smarcal1	92	76.971	Oryzias_melastigma
ENSNBRG00000016273	smarcal1	96	75.495	ENSPMGG00000019092	SMARCAL1	91	75.866	Periophthalmus_magnuspinnatus
ENSNBRG00000016273	smarcal1	84	61.846	ENSPCIG00000022514	SMARCAL1	72	61.846	Phascolarctos_cinereus
ENSNBRG00000016273	smarcal1	97	81.740	ENSPFOG00000000560	SMARCAL1	93	82.454	Poecilia_formosa
ENSNBRG00000016273	smarcal1	97	81.740	ENSPMEG00000018146	SMARCAL1	93	82.454	Poecilia_mexicana
ENSNBRG00000016273	smarcal1	63	85.681	ENSPREG00000009591	SMARCAL1	88	85.681	Poecilia_reticulata
ENSNBRG00000016273	smarcal1	97	68.344	ENSPNAG00000014900	smarcal1	88	68.834	Pygocentrus_nattereri
ENSNBRG00000016273	smarcal1	85	59.119	ENSSHAG00000013538	SMARCAL1	71	59.091	Sarcophilus_harrisii
ENSNBRG00000016273	smarcal1	97	83.491	ENSSMAG00000010427	SMARCAL1	86	83.491	Scophthalmus_maximus
ENSNBRG00000016273	smarcal1	97	81.630	ENSSDUG00000017470	SMARCAL1	91	88.571	Seriola_dumerili
ENSNBRG00000016273	smarcal1	97	83.133	ENSSLDG00000007224	SMARCAL1	93	88.143	Seriola_lalandi_dorsalis
ENSNBRG00000016273	smarcal1	84	67.786	ENSSPUG00000015369	SMARCAL1	65	67.786	Sphenodon_punctatus
ENSNBRG00000016273	smarcal1	98	84.419	ENSSPAG00000003742	smarcal1	100	84.930	Stegastes_partitus
ENSNBRG00000016273	smarcal1	85	58.967	ENSSSCG00000035501	SMARCAL1	73	59.366	Sus_scrofa
ENSNBRG00000016273	smarcal1	85	64.308	ENSTGUG00000005079	SMARCAL1	95	64.308	Taeniopygia_guttata
ENSNBRG00000016273	smarcal1	97	66.375	ENSTRUG00000010701	SMARCAL1	91	66.375	Takifugu_rubripes
ENSNBRG00000016273	smarcal1	85	52.273	ENSTTRG00000009001	SMARCAL1	69	52.273	Tursiops_truncatus
ENSNBRG00000016273	smarcal1	86	69.683	ENSXETG00000000465	smarcal1	70	69.683	Xenopus_tropicalis