EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000016409 (Gene tree)
Gene ID: 102796576
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 18089 bases
Position: chrJH422298.1:5288473-5306561
Accession: 102796576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000021409	KH_1	PF00013.29	1.8e-50	1	3
ENSNBRP00000021409	KH_1	PF00013.29	1.8e-50	2	3
ENSNBRP00000021409	KH_1	PF00013.29	1.8e-50	3	3
ENSNBRP00000021409	KH_2	PF07650.17	2.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000021988	-	1026	XM_006792887	ENSNBRP00000021409	341 (aa)	XP_006792950	-

Gene Model

Click here to download ENSNBRG00000016409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000016409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000016409	-	89	55.591	ENSNBRG00000007475	pcbp4	66	55.591
ENSNBRG00000016409	-	93	70.769	ENSNBRG00000023314	pcbp2	98	70.769
ENSNBRG00000016409	-	100	91.092	ENSNBRG00000016714	-	100	91.092
ENSNBRG00000016409	-	94	69.605	ENSNBRG00000003872	PCBP2	96	69.605
ENSNBRG00000016409	-	55	38.710	ENSNBRG00000016780	-	85	43.243
ENSNBRG00000016409	-	92	61.801	ENSNBRG00000015885	-	71	61.801
ENSNBRG00000016409	-	94	67.470	ENSNBRG00000017646	zgc:110045	72	67.470
ENSNBRG00000016409	-	61	35.294	ENSNBRG00000015099	fubp1	51	35.294
ENSNBRG00000016409	-	89	35.616	ENSNBRG00000016140	igf2bp2b	63	35.616
ENSNBRG00000016409	-	65	40.909	ENSNBRG00000005876	KHSRP	54	40.909
ENSNBRG00000016409	-	65	40.625	ENSNBRG00000023797	khsrp	56	40.625
ENSNBRG00000016409	-	62	44.444	ENSNBRG00000012167	hnrnpk	53	44.444
ENSNBRG00000016409	-	64	54.545	ENSNBRG00000005627	hnrpkl	51	54.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000016409	-	100	88.286	ENSAPOG00000016582	-	100	88.286	Acanthochromis_polyacanthus
ENSNBRG00000016409	-	95	92.308	ENSAPOG00000020003	pcbp3	86	92.308	Acanthochromis_polyacanthus
ENSNBRG00000016409	-	93	84.570	ENSAMEG00000001697	-	96	84.570	Ailuropoda_melanoleuca
ENSNBRG00000016409	-	100	99.128	ENSACIG00000010933	pcbp3	100	99.128	Amphilophus_citrinellus
ENSNBRG00000016409	-	98	87.941	ENSACIG00000002739	-	99	87.941	Amphilophus_citrinellus
ENSNBRG00000016409	-	88	84.395	ENSAOCG00000007806	-	99	84.395	Amphiprion_ocellaris
ENSNBRG00000016409	-	97	88.529	ENSAOCG00000008592	-	100	88.529	Amphiprion_ocellaris
ENSNBRG00000016409	-	98	86.510	ENSAPEG00000005209	-	99	86.510	Amphiprion_percula
ENSNBRG00000016409	-	100	96.307	ENSAPEG00000008011	pcbp3	100	96.307	Amphiprion_percula
ENSNBRG00000016409	-	95	99.385	ENSATEG00000015787	-	100	99.385	Anabas_testudineus
ENSNBRG00000016409	-	98	87.574	ENSATEG00000009833	-	99	87.574	Anabas_testudineus
ENSNBRG00000016409	-	93	82.698	ENSAPLG00000002975	-	95	82.698	Anas_platyrhynchos
ENSNBRG00000016409	-	98	75.749	ENSAPLG00000008951	-	82	75.749	Anas_platyrhynchos
ENSNBRG00000016409	-	93	84.356	ENSACAG00000009819	-	95	84.356	Anolis_carolinensis
ENSNBRG00000016409	-	93	87.896	ENSACAG00000004607	-	96	87.896	Anolis_carolinensis
ENSNBRG00000016409	-	73	87.407	ENSANAG00000030702	-	96	87.407	Aotus_nancymaae
ENSNBRG00000016409	-	100	96.591	ENSACLG00000011835	pcbp3	100	96.591	Astatotilapia_calliptera
ENSNBRG00000016409	-	100	87.714	ENSACLG00000003801	-	100	87.714	Astatotilapia_calliptera
ENSNBRG00000016409	-	100	94.286	ENSAMXG00000003440	pcbp3	100	94.286	Astyanax_mexicanus
ENSNBRG00000016409	-	95	87.963	ENSAMXG00000013588	-	100	87.963	Astyanax_mexicanus
ENSNBRG00000016409	-	94	65.982	ENSAMXG00000001760	zgc:110045	73	65.982	Astyanax_mexicanus
ENSNBRG00000016409	-	88	83.730	ENSCAFG00020019472	-	77	89.401	Canis_lupus_dingo
ENSNBRG00000016409	-	96	84.821	ENSCSAG00000007440	-	89	84.821	Chlorocebus_sabaeus
ENSNBRG00000016409	-	98	83.382	ENSCPBG00000012151	-	95	83.382	Chrysemys_picta_bellii
ENSNBRG00000016409	-	98	82.938	ENSCPBG00000000733	-	75	81.525	Chrysemys_picta_bellii
ENSNBRG00000016409	-	95	90.462	ENSCSEG00000000822	pcbp3	99	90.462	Cynoglossus_semilaevis
ENSNBRG00000016409	-	95	73.864	ENSCSEG00000016984	-	97	73.864	Cynoglossus_semilaevis
ENSNBRG00000016409	-	100	96.581	ENSCVAG00000014482	pcbp3	100	96.581	Cyprinodon_variegatus
ENSNBRG00000016409	-	100	87.714	ENSCVAG00000005262	-	100	87.714	Cyprinodon_variegatus
ENSNBRG00000016409	-	100	94.571	ENSDARG00000054378	pcbp3	100	94.571	Danio_rerio
ENSNBRG00000016409	-	93	74.924	ENSETEG00000015988	-	95	74.924	Echinops_telfairi
ENSNBRG00000016409	-	87	67.333	ENSEBUG00000016192	pcbp3	99	68.966	Eptatretus_burgeri
ENSNBRG00000016409	-	70	64.516	ENSEBUG00000005495	pcbp3	68	64.516	Eptatretus_burgeri
ENSNBRG00000016409	-	95	72.024	ENSEBUG00000007485	-	92	70.248	Eptatretus_burgeri
ENSNBRG00000016409	-	100	88.000	ENSELUG00000001560	-	96	87.611	Esox_lucius
ENSNBRG00000016409	-	100	94.901	ENSELUG00000003521	pcbp3	100	94.901	Esox_lucius
ENSNBRG00000016409	-	93	86.503	ENSFALG00000003949	-	95	86.503	Ficedula_albicollis
ENSNBRG00000016409	-	98	76.022	ENSFALG00000004411	-	77	76.022	Ficedula_albicollis
ENSNBRG00000016409	-	98	90.390	ENSFHEG00000016615	pcbp3	98	90.390	Fundulus_heteroclitus
ENSNBRG00000016409	-	98	86.510	ENSFHEG00000006539	-	99	86.510	Fundulus_heteroclitus
ENSNBRG00000016409	-	95	74.366	ENSGMOG00000011992	pcbp3	96	74.438	Gadus_morhua
ENSNBRG00000016409	-	94	67.045	ENSGMOG00000008611	-	100	67.045	Gadus_morhua
ENSNBRG00000016409	-	93	86.164	ENSGALG00000013155	-	98	86.164	Gallus_gallus
ENSNBRG00000016409	-	93	88.372	ENSGALG00000004394	-	96	88.372	Gallus_gallus
ENSNBRG00000016409	-	95	96.364	ENSGAFG00000011430	pcbp3	96	96.364	Gambusia_affinis
ENSNBRG00000016409	-	100	87.714	ENSGAFG00000010274	-	100	87.714	Gambusia_affinis
ENSNBRG00000016409	-	98	80.220	ENSGACG00000002266	-	99	80.220	Gasterosteus_aculeatus
ENSNBRG00000016409	-	95	81.818	ENSGACG00000014955	-	97	81.818	Gasterosteus_aculeatus
ENSNBRG00000016409	-	85	81.315	ENSGAGG00000000271	-	100	81.315	Gopherus_agassizii
ENSNBRG00000016409	-	82	84.211	ENSGAGG00000006956	-	93	84.211	Gopherus_agassizii
ENSNBRG00000016409	-	100	97.151	ENSHBUG00000010697	pcbp3	100	97.151	Haplochromis_burtoni
ENSNBRG00000016409	-	100	87.714	ENSHBUG00000021782	-	100	87.714	Haplochromis_burtoni
ENSNBRG00000016409	-	98	82.456	ENSHCOG00000006067	-	99	82.456	Hippocampus_comes
ENSNBRG00000016409	-	100	96.857	ENSHCOG00000017868	pcbp3	100	96.857	Hippocampus_comes
ENSNBRG00000016409	-	98	91.837	ENSIPUG00000006238	pcbp3	99	91.837	Ictalurus_punctatus
ENSNBRG00000016409	-	100	86.857	ENSKMAG00000018530	-	100	86.857	Kryptolebias_marmoratus
ENSNBRG00000016409	-	100	96.023	ENSKMAG00000003046	pcbp3	100	96.023	Kryptolebias_marmoratus
ENSNBRG00000016409	-	96	90.030	ENSLBEG00000006201	pcbp3	96	90.030	Labrus_bergylta
ENSNBRG00000016409	-	100	79.480	ENSLBEG00000006542	-	100	80.058	Labrus_bergylta
ENSNBRG00000016409	-	97	83.471	ENSLACG00000010386	pcbp3	77	83.471	Latimeria_chalumnae
ENSNBRG00000016409	-	98	75.824	ENSLACG00000010804	zgc:110045	77	75.824	Latimeria_chalumnae
ENSNBRG00000016409	-	96	91.667	ENSLOCG00000009369	pcbp3	98	91.667	Lepisosteus_oculatus
ENSNBRG00000016409	-	93	83.742	ENSLOCG00000005058	zgc:110045	80	83.742	Lepisosteus_oculatus
ENSNBRG00000016409	-	95	92.593	ENSMAMG00000022336	pcbp3	93	92.593	Mastacembelus_armatus
ENSNBRG00000016409	-	98	86.391	ENSMAMG00000011620	-	99	86.391	Mastacembelus_armatus
ENSNBRG00000016409	-	100	97.143	ENSMZEG00005008993	pcbp3	100	97.143	Maylandia_zebra
ENSNBRG00000016409	-	100	88.856	ENSMZEG00005014882	-	100	88.953	Maylandia_zebra
ENSNBRG00000016409	-	94	77.299	ENSMGAG00000001883	-	96	77.299	Meleagris_gallopavo
ENSNBRG00000016409	-	98	76.022	ENSMGAG00000006794	-	77	76.022	Meleagris_gallopavo
ENSNBRG00000016409	-	98	87.761	ENSMMOG00000005216	-	99	87.761	Mola_mola
ENSNBRG00000016409	-	95	88.323	ENSMMOG00000000730	pcbp3	88	88.323	Mola_mola
ENSNBRG00000016409	-	73	85.514	ENSMODG00000027884	-	93	85.514	Monodelphis_domestica
ENSNBRG00000016409	-	100	98.542	ENSMALG00000000691	pcbp3	100	98.542	Monopterus_albus
ENSNBRG00000016409	-	93	78.841	ENSMPUG00000001779	-	88	78.841	Mustela_putorius_furo
ENSNBRG00000016409	-	93	88.496	ENSOPRG00000003431	-	99	88.496	Ochotona_princeps
ENSNBRG00000016409	-	98	85.714	ENSONIG00000004611	-	99	85.714	Oreochromis_niloticus
ENSNBRG00000016409	-	95	92.045	ENSONIG00000012122	-	98	92.045	Oreochromis_niloticus
ENSNBRG00000016409	-	93	86.196	ENSOCUG00000002696	-	87	86.196	Oryctolagus_cuniculus
ENSNBRG00000016409	-	99	87.679	ENSORLG00000022739	-	99	87.679	Oryzias_latipes
ENSNBRG00000016409	-	95	90.090	ENSORLG00000000059	pcbp3	100	90.090	Oryzias_latipes
ENSNBRG00000016409	-	95	90.090	ENSORLG00020012671	pcbp3	97	90.090	Oryzias_latipes_hni
ENSNBRG00000016409	-	99	87.393	ENSORLG00020006124	-	99	87.463	Oryzias_latipes_hni
ENSNBRG00000016409	-	95	90.090	ENSORLG00015000429	pcbp3	97	90.090	Oryzias_latipes_hsok
ENSNBRG00000016409	-	99	87.679	ENSORLG00015008051	-	99	87.679	Oryzias_latipes_hsok
ENSNBRG00000016409	-	88	91.362	ENSOMEG00000020811	pcbp3	96	91.362	Oryzias_melastigma
ENSNBRG00000016409	-	95	88.957	ENSOMEG00000020162	-	97	88.957	Oryzias_melastigma
ENSNBRG00000016409	-	93	80.170	ENSOGAG00000008044	-	96	80.170	Otolemur_garnettii
ENSNBRG00000016409	-	100	87.679	ENSPKIG00000019329	pcbp3	100	87.679	Paramormyrops_kingsleyae
ENSNBRG00000016409	-	76	82.178	ENSPKIG00000020913	-	91	82.178	Paramormyrops_kingsleyae
ENSNBRG00000016409	-	93	73.837	ENSPSIG00000014970	-	95	74.419	Pelodiscus_sinensis
ENSNBRG00000016409	-	76	81.538	ENSPSIG00000008350	-	72	81.538	Pelodiscus_sinensis
ENSNBRG00000016409	-	100	96.000	ENSPMGG00000022383	pcbp3	100	96.000	Periophthalmus_magnuspinnatus
ENSNBRG00000016409	-	95	66.667	ENSPMAG00000004551	pcbp3	90	66.667	Petromyzon_marinus
ENSNBRG00000016409	-	69	84.574	ENSPMAG00000004637	-	97	84.574	Petromyzon_marinus
ENSNBRG00000016409	-	93	92.966	ENSPCIG00000028092	-	96	92.966	Phascolarctos_cinereus
ENSNBRG00000016409	-	94	86.527	ENSPLAG00000004074	-	89	86.527	Poecilia_latipinna
ENSNBRG00000016409	-	100	85.422	ENSPLAG00000011449	pcbp3	100	85.422	Poecilia_latipinna
ENSNBRG00000016409	-	100	90.323	ENSPMEG00000006653	-	100	90.323	Poecilia_mexicana
ENSNBRG00000016409	-	100	95.480	ENSPMEG00000021239	pcbp3	100	95.480	Poecilia_mexicana
ENSNBRG00000016409	-	95	89.264	ENSPREG00000020585	-	97	89.264	Poecilia_reticulata
ENSNBRG00000016409	-	95	90.214	ENSPREG00000015736	pcbp3	99	90.214	Poecilia_reticulata
ENSNBRG00000016409	-	95	90.390	ENSPNYG00000012326	pcbp3	95	90.390	Pundamilia_nyererei
ENSNBRG00000016409	-	98	87.761	ENSPNYG00000013205	-	99	87.761	Pundamilia_nyererei
ENSNBRG00000016409	-	98	86.297	ENSPNAG00000015104	pcbp3	99	86.297	Pygocentrus_nattereri
ENSNBRG00000016409	-	100	92.571	ENSPNAG00000008541	-	100	92.571	Pygocentrus_nattereri
ENSNBRG00000016409	-	93	86.239	ENSRNOG00000001245	Pcbp3	95	86.239	Rattus_norvegicus
ENSNBRG00000016409	-	96	77.929	ENSRBIG00000028177	-	98	77.929	Rhinopithecus_bieti
ENSNBRG00000016409	-	93	82.286	ENSSHAG00000007890	-	96	81.503	Sarcophilus_harrisii
ENSNBRG00000016409	-	100	93.123	ENSSFOG00015014706	pcbp3	100	93.123	Scleropages_formosus
ENSNBRG00000016409	-	95	94.578	ENSSFOG00015010205	pcbp3	100	94.578	Scleropages_formosus
ENSNBRG00000016409	-	93	78.638	ENSSFOG00015007118	-	93	78.638	Scleropages_formosus
ENSNBRG00000016409	-	95	92.308	ENSSMAG00000011929	pcbp3	97	92.308	Scophthalmus_maximus
ENSNBRG00000016409	-	100	87.429	ENSSMAG00000003135	-	100	87.429	Scophthalmus_maximus
ENSNBRG00000016409	-	100	89.306	ENSSDUG00000008502	-	100	89.306	Seriola_dumerili
ENSNBRG00000016409	-	95	99.080	ENSSDUG00000011608	pcbp3	99	99.080	Seriola_dumerili
ENSNBRG00000016409	-	95	99.080	ENSSLDG00000008518	pcbp3	99	99.080	Seriola_lalandi_dorsalis
ENSNBRG00000016409	-	100	88.286	ENSSLDG00000020161	-	100	88.286	Seriola_lalandi_dorsalis
ENSNBRG00000016409	-	98	77.159	ENSSPUG00000013214	-	91	85.417	Sphenodon_punctatus
ENSNBRG00000016409	-	100	86.744	ENSSPAG00000023341	-	100	86.744	Stegastes_partitus
ENSNBRG00000016409	-	88	84.395	ENSSPAG00000004190	-	99	84.395	Stegastes_partitus
ENSNBRG00000016409	-	93	80.428	ENSTGUG00000008158	-	96	80.428	Taeniopygia_guttata
ENSNBRG00000016409	-	93	79.251	ENSTGUG00000003316	-	96	79.251	Taeniopygia_guttata
ENSNBRG00000016409	-	100	92.550	ENSTRUG00000013604	pcbp3	100	92.550	Takifugu_rubripes
ENSNBRG00000016409	-	96	82.583	ENSTRUG00000006280	-	99	82.583	Takifugu_rubripes
ENSNBRG00000016409	-	93	86.127	ENSTTRG00000015075	-	96	86.127	Tursiops_truncatus
ENSNBRG00000016409	-	93	76.093	ENSXETG00000010491	pcbp2	75	76.093	Xenopus_tropicalis
ENSNBRG00000016409	-	93	80.403	ENSXETG00000011483	pcbp1	96	80.403	Xenopus_tropicalis
ENSNBRG00000016409	-	100	95.480	ENSXCOG00000020481	pcbp3	100	95.480	Xiphophorus_couchianus
ENSNBRG00000016409	-	100	96.307	ENSXMAG00000008175	pcbp3	100	96.307	Xiphophorus_maculatus
ENSNBRG00000016409	-	100	88.000	ENSXMAG00000028711	-	100	88.000	Xiphophorus_maculatus