EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000016642 (Gene tree)
Gene ID: 102789946
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3A subunit 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 5258 bases
Position: chrJH422421.1:6679-11936
Accession: 102789946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000021732	PRP21_like_P	PF12230.8	5.8e-52	1	1
ENSNBRP00000021732	Surp	PF01805.20	6e-46	1	2
ENSNBRP00000021732	Surp	PF01805.20	6e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000022316	-	2361	XM_006805849	ENSNBRP00000021732	786 (aa)	XP_006805912	-

Gene Model

Click here to download ENSNBRG00000016642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000016642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000016642	sf3a1	96	87.220	ENSG00000099995	SF3A1	100	84.635	Homo_sapiens
ENSNBRG00000016642	sf3a1	100	96.066	ENSAPOG00000020465	sf3a1	100	96.066	Acanthochromis_polyacanthus
ENSNBRG00000016642	sf3a1	96	86.825	ENSAMEG00000007737	SF3A1	100	83.562	Ailuropoda_melanoleuca
ENSNBRG00000016642	sf3a1	100	96.193	ENSACIG00000020672	sf3a1	100	96.193	Amphilophus_citrinellus
ENSNBRG00000016642	sf3a1	100	95.939	ENSAOCG00000003060	sf3a1	100	95.939	Amphiprion_ocellaris
ENSNBRG00000016642	sf3a1	100	96.066	ENSAPEG00000010735	sf3a1	100	96.066	Amphiprion_percula
ENSNBRG00000016642	sf3a1	97	96.209	ENSATEG00000021201	sf3a1	96	96.209	Anabas_testudineus
ENSNBRG00000016642	sf3a1	96	85.865	ENSAPLG00000009057	SF3A1	100	84.547	Anas_platyrhynchos
ENSNBRG00000016642	sf3a1	100	81.605	ENSACAG00000009415	SF3A1	100	81.852	Anolis_carolinensis
ENSNBRG00000016642	sf3a1	99	84.930	ENSANAG00000032045	SF3A1	100	84.761	Aotus_nancymaae
ENSNBRG00000016642	sf3a1	100	98.855	ENSACLG00000012622	sf3a1	100	98.855	Astatotilapia_calliptera
ENSNBRG00000016642	sf3a1	99	87.675	ENSAMXG00000005382	sf3a1	99	88.310	Astyanax_mexicanus
ENSNBRG00000016642	sf3a1	96	86.957	ENSBTAG00000003390	SF3A1	100	83.770	Bos_taurus
ENSNBRG00000016642	sf3a1	80	46.019	WBGene00004188	prp-21	97	42.784	Caenorhabditis_elegans
ENSNBRG00000016642	sf3a1	96	86.825	ENSCJAG00000010370	SF3A1	100	84.635	Callithrix_jacchus
ENSNBRG00000016642	sf3a1	96	86.825	ENSCAFG00000012559	SF3A1	100	83.770	Canis_familiaris
ENSNBRG00000016642	sf3a1	96	86.825	ENSCAFG00020000838	SF3A1	100	83.770	Canis_lupus_dingo
ENSNBRG00000016642	sf3a1	96	87.088	ENSCHIG00000018642	SF3A1	100	83.895	Capra_hircus
ENSNBRG00000016642	sf3a1	96	86.825	ENSTSYG00000004739	SF3A1	100	83.770	Carlito_syrichta
ENSNBRG00000016642	sf3a1	94	70.325	ENSCAPG00000015414	SF3A1	96	70.325	Cavia_aperea
ENSNBRG00000016642	sf3a1	96	87.220	ENSCPOG00000014589	SF3A1	100	83.645	Cavia_porcellus
ENSNBRG00000016642	sf3a1	99	84.930	ENSCCAG00000032006	SF3A1	100	84.761	Cebus_capucinus
ENSNBRG00000016642	sf3a1	96	86.825	ENSCATG00000029241	SF3A1	100	83.770	Cercocebus_atys
ENSNBRG00000016642	sf3a1	96	86.693	ENSCLAG00000006508	SF3A1	100	84.257	Chinchilla_lanigera
ENSNBRG00000016642	sf3a1	96	86.825	ENSCSAG00000009470	SF3A1	100	84.635	Chlorocebus_sabaeus
ENSNBRG00000016642	sf3a1	57	91.440	ENSCHOG00000005201	SF3A1	61	91.829	Choloepus_hoffmanni
ENSNBRG00000016642	sf3a1	100	82.581	ENSCPBG00000007595	SF3A1	100	82.331	Chrysemys_picta_bellii
ENSNBRG00000016642	sf3a1	95	51.693	ENSCING00000008526	-	97	51.720	Ciona_intestinalis
ENSNBRG00000016642	sf3a1	97	50.193	ENSCSAVG00000005608	-	100	49.936	Ciona_savignyi
ENSNBRG00000016642	sf3a1	96	86.825	ENSCANG00000033564	SF3A1	100	84.635	Colobus_angolensis_palliatus
ENSNBRG00000016642	sf3a1	96	86.166	ENSCGRG00001008933	Sf3a1	100	83.271	Cricetulus_griseus_chok1gshd
ENSNBRG00000016642	sf3a1	96	86.166	ENSCGRG00000006127	Sf3a1	100	83.271	Cricetulus_griseus_crigri
ENSNBRG00000016642	sf3a1	100	90.380	ENSCSEG00000010792	sf3a1	100	90.355	Cynoglossus_semilaevis
ENSNBRG00000016642	sf3a1	100	92.640	ENSCVAG00000004560	sf3a1	100	92.893	Cyprinodon_variegatus
ENSNBRG00000016642	sf3a1	100	86.929	ENSDARG00000041887	sf3a1	100	89.831	Danio_rerio
ENSNBRG00000016642	sf3a1	96	86.597	ENSDNOG00000010629	SF3A1	98	84.450	Dasypus_novemcinctus
ENSNBRG00000016642	sf3a1	96	87.220	ENSDORG00000005613	Sf3a1	100	83.770	Dipodomys_ordii
ENSNBRG00000016642	sf3a1	83	61.321	FBgn0266917	Sf3a1	97	50.918	Drosophila_melanogaster
ENSNBRG00000016642	sf3a1	85	85.757	ENSETEG00000017194	SF3A1	95	86.057	Echinops_telfairi
ENSNBRG00000016642	sf3a1	96	67.581	ENSEBUG00000001285	sf3a1	95	69.686	Eptatretus_burgeri
ENSNBRG00000016642	sf3a1	96	86.825	ENSEASG00005010254	SF3A1	100	84.383	Equus_asinus_asinus
ENSNBRG00000016642	sf3a1	96	86.825	ENSECAG00000023962	SF3A1	100	84.383	Equus_caballus
ENSNBRG00000016642	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	83	88.525	Erinaceus_europaeus
ENSNBRG00000016642	sf3a1	100	86.094	ENSELUG00000022578	sf3a1	100	86.726	Esox_lucius
ENSNBRG00000016642	sf3a1	96	86.693	ENSFCAG00000011932	SF3A1	100	83.645	Felis_catus
ENSNBRG00000016642	sf3a1	96	85.450	ENSFALG00000006944	SF3A1	100	83.586	Ficedula_albicollis
ENSNBRG00000016642	sf3a1	96	86.693	ENSFDAG00000009560	SF3A1	100	83.645	Fukomys_damarensis
ENSNBRG00000016642	sf3a1	100	92.640	ENSFHEG00000010866	sf3a1	100	93.401	Fundulus_heteroclitus
ENSNBRG00000016642	sf3a1	100	87.150	ENSGMOG00000016024	sf3a1	100	87.039	Gadus_morhua
ENSNBRG00000016642	sf3a1	96	86.376	ENSGALG00000007937	SF3A1	100	83.965	Gallus_gallus
ENSNBRG00000016642	sf3a1	100	92.893	ENSGAFG00000009111	sf3a1	100	93.274	Gambusia_affinis
ENSNBRG00000016642	sf3a1	100	89.646	ENSGACG00000011893	sf3a1	100	89.747	Gasterosteus_aculeatus
ENSNBRG00000016642	sf3a1	96	82.484	ENSGAGG00000000762	SF3A1	99	82.222	Gopherus_agassizii
ENSNBRG00000016642	sf3a1	96	87.220	ENSGGOG00000012631	SF3A1	100	84.635	Gorilla_gorilla
ENSNBRG00000016642	sf3a1	100	98.982	ENSHBUG00000015795	sf3a1	100	98.982	Haplochromis_burtoni
ENSNBRG00000016642	sf3a1	96	86.693	ENSHGLG00000007907	SF3A1	100	83.645	Heterocephalus_glaber_female
ENSNBRG00000016642	sf3a1	96	86.693	ENSHGLG00100013799	SF3A1	100	83.645	Heterocephalus_glaber_male
ENSNBRG00000016642	sf3a1	100	90.216	ENSHCOG00000015423	sf3a1	100	90.216	Hippocampus_comes
ENSNBRG00000016642	sf3a1	97	85.528	ENSIPUG00000002470	sf3a1	98	86.310	Ictalurus_punctatus
ENSNBRG00000016642	sf3a1	96	86.693	ENSSTOG00000013892	SF3A1	100	84.277	Ictidomys_tridecemlineatus
ENSNBRG00000016642	sf3a1	96	86.693	ENSJJAG00000022566	Sf3a1	100	83.541	Jaculus_jaculus
ENSNBRG00000016642	sf3a1	100	91.751	ENSKMAG00000002400	sf3a1	100	92.513	Kryptolebias_marmoratus
ENSNBRG00000016642	sf3a1	100	92.630	ENSLBEG00000022974	sf3a1	100	92.630	Labrus_bergylta
ENSNBRG00000016642	sf3a1	100	83.418	ENSLACG00000003565	SF3A1	100	83.418	Latimeria_chalumnae
ENSNBRG00000016642	sf3a1	100	87.358	ENSLOCG00000008251	sf3a1	99	87.231	Lepisosteus_oculatus
ENSNBRG00000016642	sf3a1	96	87.220	ENSLAFG00000000448	SF3A1	100	84.145	Loxodonta_africana
ENSNBRG00000016642	sf3a1	97	56.347	ENSLAFG00000026032	-	97	55.412	Loxodonta_africana
ENSNBRG00000016642	sf3a1	96	86.693	ENSMFAG00000031979	SF3A1	100	84.509	Macaca_fascicularis
ENSNBRG00000016642	sf3a1	96	86.693	ENSMMUG00000005547	SF3A1	100	84.509	Macaca_mulatta
ENSNBRG00000016642	sf3a1	96	86.825	ENSMNEG00000037229	SF3A1	100	84.635	Macaca_nemestrina
ENSNBRG00000016642	sf3a1	96	86.825	ENSMLEG00000041908	SF3A1	100	84.635	Mandrillus_leucophaeus
ENSNBRG00000016642	sf3a1	97	94.641	ENSMAMG00000006460	sf3a1	96	94.909	Mastacembelus_armatus
ENSNBRG00000016642	sf3a1	100	98.855	ENSMZEG00005009633	sf3a1	100	98.855	Maylandia_zebra
ENSNBRG00000016642	sf3a1	96	86.376	ENSMGAG00000001330	SF3A1	99	85.864	Meleagris_gallopavo
ENSNBRG00000016642	sf3a1	93	82.128	ENSMAUG00000020317	Sf3a1	100	78.184	Mesocricetus_auratus
ENSNBRG00000016642	sf3a1	96	86.957	ENSMICG00000010038	SF3A1	100	83.770	Microcebus_murinus
ENSNBRG00000016642	sf3a1	99	84.547	ENSMOCG00000008438	Sf3a1	100	83.396	Microtus_ochrogaster
ENSNBRG00000016642	sf3a1	100	91.105	ENSMMOG00000015588	sf3a1	99	91.360	Mola_mola
ENSNBRG00000016642	sf3a1	96	85.903	ENSMODG00000009270	SF3A1	100	84.111	Monodelphis_domestica
ENSNBRG00000016642	sf3a1	100	93.139	ENSMALG00000000148	sf3a1	100	93.901	Monopterus_albus
ENSNBRG00000016642	sf3a1	97	86.013	MGP_CAROLIEiJ_G0016029	Sf3a1	99	84.197	Mus_caroli
ENSNBRG00000016642	sf3a1	97	86.013	ENSMUSG00000002129	Sf3a1	99	84.197	Mus_musculus
ENSNBRG00000016642	sf3a1	97	85.752	MGP_PahariEiJ_G0016862	Sf3a1	99	84.071	Mus_pahari
ENSNBRG00000016642	sf3a1	97	86.013	MGP_SPRETEiJ_G0016870	Sf3a1	99	84.197	Mus_spretus
ENSNBRG00000016642	sf3a1	96	86.825	ENSMPUG00000013144	SF3A1	100	83.770	Mustela_putorius_furo
ENSNBRG00000016642	sf3a1	96	86.825	ENSMLUG00000002139	SF3A1	100	84.509	Myotis_lucifugus
ENSNBRG00000016642	sf3a1	96	86.957	ENSNGAG00000016977	Sf3a1	100	84.257	Nannospalax_galili
ENSNBRG00000016642	sf3a1	96	86.825	ENSNLEG00000003686	SF3A1	100	84.635	Nomascus_leucogenys
ENSNBRG00000016642	sf3a1	92	77.548	ENSMEUG00000008741	SF3A1	100	75.789	Notamacropus_eugenii
ENSNBRG00000016642	sf3a1	97	87.270	ENSOPRG00000016636	SF3A1	100	85.157	Ochotona_princeps
ENSNBRG00000016642	sf3a1	96	86.825	ENSODEG00000002571	SF3A1	100	84.363	Octodon_degus
ENSNBRG00000016642	sf3a1	100	98.221	ENSONIG00000010848	sf3a1	100	98.221	Oreochromis_niloticus
ENSNBRG00000016642	sf3a1	96	86.825	ENSOCUG00000007633	SF3A1	100	83.645	Oryctolagus_cuniculus
ENSNBRG00000016642	sf3a1	96	91.512	ENSORLG00000013050	sf3a1	99	92.971	Oryzias_latipes
ENSNBRG00000016642	sf3a1	99	90.153	ENSORLG00020003236	sf3a1	97	90.851	Oryzias_latipes_hni
ENSNBRG00000016642	sf3a1	100	91.487	ENSORLG00015017411	sf3a1	100	92.757	Oryzias_latipes_hsok
ENSNBRG00000016642	sf3a1	100	92.884	ENSOMEG00000013362	sf3a1	100	92.884	Oryzias_melastigma
ENSNBRG00000016642	sf3a1	96	86.825	ENSOGAG00000012931	SF3A1	100	83.770	Otolemur_garnettii
ENSNBRG00000016642	sf3a1	96	85.639	ENSOARG00000006849	SF3A1	100	82.147	Ovis_aries
ENSNBRG00000016642	sf3a1	96	86.430	ENSPPAG00000041790	SF3A1	100	83.879	Pan_paniscus
ENSNBRG00000016642	sf3a1	96	86.693	ENSPPRG00000004391	SF3A1	100	83.645	Panthera_pardus
ENSNBRG00000016642	sf3a1	96	86.561	ENSPTIG00000000844	SF3A1	98	86.693	Panthera_tigris_altaica
ENSNBRG00000016642	sf3a1	96	87.220	ENSPTRG00000014240	SF3A1	100	84.635	Pan_troglodytes
ENSNBRG00000016642	sf3a1	96	86.825	ENSPANG00000020772	SF3A1	100	84.635	Papio_anubis
ENSNBRG00000016642	sf3a1	81	89.011	ENSPSIG00000012803	SF3A1	98	89.011	Pelodiscus_sinensis
ENSNBRG00000016642	sf3a1	97	92.267	ENSPMGG00000023096	sf3a1	100	91.612	Periophthalmus_magnuspinnatus
ENSNBRG00000016642	sf3a1	96	86.298	ENSPEMG00000009494	Sf3a1	100	83.396	Peromyscus_maniculatus_bairdii
ENSNBRG00000016642	sf3a1	69	77.697	ENSPMAG00000007139	-	100	71.617	Petromyzon_marinus
ENSNBRG00000016642	sf3a1	96	86.561	ENSPCIG00000022692	SF3A1	100	84.237	Phascolarctos_cinereus
ENSNBRG00000016642	sf3a1	100	84.391	ENSPFOG00000016768	sf3a1	100	84.391	Poecilia_formosa
ENSNBRG00000016642	sf3a1	100	93.655	ENSPLAG00000017268	sf3a1	100	94.036	Poecilia_latipinna
ENSNBRG00000016642	sf3a1	96	94.729	ENSPMEG00000019811	sf3a1	100	94.729	Poecilia_mexicana
ENSNBRG00000016642	sf3a1	100	93.401	ENSPREG00000010347	sf3a1	100	93.782	Poecilia_reticulata
ENSNBRG00000016642	sf3a1	96	86.825	ENSPPYG00000011707	SF3A1	100	84.635	Pongo_abelii
ENSNBRG00000016642	sf3a1	58	85.537	ENSPCAG00000003266	SF3A1	57	85.537	Procavia_capensis
ENSNBRG00000016642	sf3a1	96	86.693	ENSPCOG00000026630	SF3A1	100	83.521	Propithecus_coquereli
ENSNBRG00000016642	sf3a1	95	85.791	ENSPVAG00000017719	SF3A1	94	85.925	Pteropus_vampyrus
ENSNBRG00000016642	sf3a1	100	98.728	ENSPNYG00000018706	sf3a1	100	98.728	Pundamilia_nyererei
ENSNBRG00000016642	sf3a1	99	87.039	ENSPNAG00000003721	sf3a1	99	87.294	Pygocentrus_nattereri
ENSNBRG00000016642	sf3a1	96	86.298	ENSRNOG00000005218	Sf3a1	99	84.244	Rattus_norvegicus
ENSNBRG00000016642	sf3a1	96	86.825	ENSRBIG00000032167	SF3A1	100	84.635	Rhinopithecus_bieti
ENSNBRG00000016642	sf3a1	96	86.825	ENSRROG00000044908	SF3A1	100	84.635	Rhinopithecus_roxellana
ENSNBRG00000016642	sf3a1	93	86.512	ENSSBOG00000021960	SF3A1	98	86.957	Saimiri_boliviensis_boliviensis
ENSNBRG00000016642	sf3a1	96	83.267	ENSSHAG00000003666	SF3A1	96	84.058	Sarcophilus_harrisii
ENSNBRG00000016642	sf3a1	100	88.651	ENSSFOG00015004579	sf3a1	100	89.660	Scleropages_formosus
ENSNBRG00000016642	sf3a1	100	90.597	ENSSMAG00000004275	sf3a1	100	90.470	Scophthalmus_maximus
ENSNBRG00000016642	sf3a1	100	95.553	ENSSDUG00000022219	sf3a1	100	95.553	Seriola_dumerili
ENSNBRG00000016642	sf3a1	100	95.553	ENSSLDG00000012642	sf3a1	100	95.553	Seriola_lalandi_dorsalis
ENSNBRG00000016642	sf3a1	96	84.190	ENSSARG00000005960	SF3A1	98	83.926	Sorex_araneus
ENSNBRG00000016642	sf3a1	96	85.026	ENSSPUG00000018863	SF3A1	100	82.647	Sphenodon_punctatus
ENSNBRG00000016642	sf3a1	100	96.188	ENSSPAG00000011856	sf3a1	100	96.188	Stegastes_partitus
ENSNBRG00000016642	sf3a1	96	86.957	ENSSSCG00000010002	SF3A1	100	83.895	Sus_scrofa
ENSNBRG00000016642	sf3a1	96	85.884	ENSTGUG00000010547	SF3A1	99	85.901	Taeniopygia_guttata
ENSNBRG00000016642	sf3a1	100	89.454	ENSTRUG00000006118	sf3a1	100	88.437	Takifugu_rubripes
ENSNBRG00000016642	sf3a1	64	88.060	ENSTNIG00000005713	sf3a1	88	88.496	Tetraodon_nigroviridis
ENSNBRG00000016642	sf3a1	96	80.105	ENSTBEG00000012771	SF3A1	100	78.086	Tupaia_belangeri
ENSNBRG00000016642	sf3a1	96	86.842	ENSTTRG00000001535	SF3A1	100	83.791	Tursiops_truncatus
ENSNBRG00000016642	sf3a1	99	82.642	ENSUAMG00000006750	SF3A1	99	82.767	Ursus_americanus
ENSNBRG00000016642	sf3a1	100	83.479	ENSUMAG00000016665	SF3A1	100	83.629	Ursus_maritimus
ENSNBRG00000016642	sf3a1	96	86.825	ENSVVUG00000003075	SF3A1	100	83.770	Vulpes_vulpes
ENSNBRG00000016642	sf3a1	100	79.523	ENSXETG00000016144	sf3a1	96	84.211	Xenopus_tropicalis
ENSNBRG00000016642	sf3a1	100	93.020	ENSXCOG00000015653	sf3a1	100	93.401	Xiphophorus_couchianus
ENSNBRG00000016642	sf3a1	100	93.274	ENSXMAG00000002753	sf3a1	100	93.655	Xiphophorus_maculatus