EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000016714 (Gene tree)
Gene ID: 102796658
Gene Symbol: -
Alias: zgc:109966
Full Name: poly(rC)-binding protein 3-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 22297 bases
Position: chrJH422302.1:5029418-5051714
Accession: 102796658
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000022000	KH_1	PF00013.29	1.5e-50	1	3
ENSNBRP00000022000	KH_1	PF00013.29	1.5e-50	2	3
ENSNBRP00000022000	KH_1	PF00013.29	1.5e-50	3	3
ENSNBRP00000022137	KH_1	PF00013.29	1.5e-50	1	3
ENSNBRP00000022137	KH_1	PF00013.29	1.5e-50	2	3
ENSNBRP00000022137	KH_1	PF00013.29	1.5e-50	3	3
ENSNBRP00000022123	KH_1	PF00013.29	1.8e-50	1	3
ENSNBRP00000022123	KH_1	PF00013.29	1.8e-50	2	3
ENSNBRP00000022123	KH_1	PF00013.29	1.8e-50	3	3
ENSNBRP00000022072	KH_1	PF00013.29	5.6e-42	1	2
ENSNBRP00000022072	KH_1	PF00013.29	5.6e-42	2	2
ENSNBRP00000022141	KH_1	PF00013.29	7.5e-32	1	2
ENSNBRP00000022141	KH_1	PF00013.29	7.5e-32	2	2
ENSNBRP00000022000	KH_2	PF07650.17	5.7e-12	1	1
ENSNBRP00000022137	KH_2	PF07650.17	1.1e-11	1	1
ENSNBRP00000022123	KH_2	PF07650.17	1.3e-11	1	1
ENSNBRP00000022072	KH_2	PF07650.17	3.6e-09	1	1
ENSNBRP00000022141	KH_2	PF07650.17	6.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000022585	-	981	-	ENSNBRP00000022000	326 (aa)	-	-
ENSNBRT00000022726	-	681	-	ENSNBRP00000022141	226 (aa)	-	-
ENSNBRT00000022722	-	993	-	ENSNBRP00000022137	330 (aa)	-	-
ENSNBRT00000022657	-	930	-	ENSNBRP00000022072	309 (aa)	-	-
ENSNBRT00000022708	-	1041	XM_006793702	ENSNBRP00000022123	346 (aa)	XP_006793765	-

Gene Model

Click here to download ENSNBRG00000016714's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000016714's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000016714	-	100	91.092	ENSNBRG00000016409	-	100	91.092
ENSNBRG00000016714	-	98	71.212	ENSNBRG00000003872	PCBP2	91	82.065
ENSNBRG00000016714	-	97	58.284	ENSNBRG00000015885	-	75	58.284
ENSNBRG00000016714	-	99	69.578	ENSNBRG00000023314	pcbp2	98	71.656
ENSNBRG00000016714	-	85	45.283	ENSNBRG00000016140	igf2bp2b	60	45.283
ENSNBRG00000016714	-	64	37.778	ENSNBRG00000016780	-	85	43.243
ENSNBRG00000016714	-	88	39.474	ENSNBRG00000008100	nova1	83	33.333
ENSNBRG00000016714	-	70	41.176	ENSNBRG00000005876	KHSRP	55	41.176
ENSNBRG00000016714	-	97	68.405	ENSNBRG00000017646	zgc:110045	75	66.467
ENSNBRG00000016714	-	69	52.055	ENSNBRG00000005627	hnrpkl	53	52.055
ENSNBRG00000016714	-	92	31.496	ENSNBRG00000009346	igf2bp1	54	30.328
ENSNBRG00000016714	-	65	37.143	ENSNBRG00000015099	fubp1	53	36.923
ENSNBRG00000016714	-	63	42.857	ENSNBRG00000012167	hnrnpk	50	53.488
ENSNBRG00000016714	-	94	53.659	ENSNBRG00000007475	pcbp4	69	53.659
ENSNBRG00000016714	-	69	39.706	ENSNBRG00000023797	khsrp	55	41.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000016714	-	95	89.776	ENSAPOG00000020003	pcbp3	86	89.457	Acanthochromis_polyacanthus
ENSNBRG00000016714	-	100	90.237	ENSAPOG00000016582	-	100	90.237	Acanthochromis_polyacanthus
ENSNBRG00000016714	-	100	83.046	ENSAMEG00000001697	-	95	84.118	Ailuropoda_melanoleuca
ENSNBRG00000016714	-	99	89.939	ENSACIG00000002739	-	97	90.909	Amphilophus_citrinellus
ENSNBRG00000016714	-	100	90.857	ENSACIG00000010933	pcbp3	96	95.238	Amphilophus_citrinellus
ENSNBRG00000016714	-	91	88.158	ENSAOCG00000007806	-	100	88.158	Amphiprion_ocellaris
ENSNBRG00000016714	-	97	85.976	ENSAOCG00000008592	-	100	85.976	Amphiprion_ocellaris
ENSNBRG00000016714	-	100	89.385	ENSAPEG00000008011	pcbp3	100	89.385	Amphiprion_percula
ENSNBRG00000016714	-	99	88.754	ENSAPEG00000005209	-	98	88.754	Amphiprion_percula
ENSNBRG00000016714	-	95	91.818	ENSATEG00000015787	-	99	91.818	Anabas_testudineus
ENSNBRG00000016714	-	99	89.264	ENSATEG00000009833	-	97	90.852	Anabas_testudineus
ENSNBRG00000016714	-	100	83.673	ENSAPLG00000002975	-	99	83.673	Anas_platyrhynchos
ENSNBRG00000016714	-	98	73.656	ENSAPLG00000008951	-	82	73.656	Anas_platyrhynchos
ENSNBRG00000016714	-	100	81.868	ENSACAG00000004607	-	99	81.717	Anolis_carolinensis
ENSNBRG00000016714	-	99	77.326	ENSACAG00000009819	-	95	81.791	Anolis_carolinensis
ENSNBRG00000016714	-	94	72.119	ENSANAG00000030702	-	91	95.455	Aotus_nancymaae
ENSNBRG00000016714	-	100	90.828	ENSACLG00000003801	-	100	90.828	Astatotilapia_calliptera
ENSNBRG00000016714	-	100	88.547	ENSACLG00000011835	pcbp3	100	88.547	Astatotilapia_calliptera
ENSNBRG00000016714	-	100	90.730	ENSAMXG00000003440	pcbp3	100	90.730	Astyanax_mexicanus
ENSNBRG00000016714	-	96	68.085	ENSAMXG00000001760	zgc:110045	73	67.477	Astyanax_mexicanus
ENSNBRG00000016714	-	95	87.859	ENSAMXG00000013588	-	100	87.859	Astyanax_mexicanus
ENSNBRG00000016714	-	93	82.400	ENSCAFG00020019472	-	85	82.400	Canis_lupus_dingo
ENSNBRG00000016714	-	100	85.629	ENSCSAG00000007440	-	91	85.629	Chlorocebus_sabaeus
ENSNBRG00000016714	-	97	85.494	ENSCPBG00000012151	-	99	82.235	Chrysemys_picta_bellii
ENSNBRG00000016714	-	99	85.000	ENSCPBG00000000733	-	73	85.000	Chrysemys_picta_bellii
ENSNBRG00000016714	-	95	88.179	ENSCSEG00000000822	pcbp3	99	88.179	Cynoglossus_semilaevis
ENSNBRG00000016714	-	97	83.636	ENSCSEG00000016984	-	97	77.204	Cynoglossus_semilaevis
ENSNBRG00000016714	-	100	89.349	ENSCVAG00000005262	-	100	89.349	Cyprinodon_variegatus
ENSNBRG00000016714	-	100	89.106	ENSCVAG00000014482	pcbp3	100	89.106	Cyprinodon_variegatus
ENSNBRG00000016714	-	100	91.011	ENSDARG00000054378	pcbp3	100	91.011	Danio_rerio
ENSNBRG00000016714	-	100	74.251	ENSETEG00000015988	-	99	74.551	Echinops_telfairi
ENSNBRG00000016714	-	89	64.706	ENSEBUG00000005495	pcbp3	74	62.016	Eptatretus_burgeri
ENSNBRG00000016714	-	90	66.780	ENSEBUG00000016192	pcbp3	100	66.182	Eptatretus_burgeri
ENSNBRG00000016714	-	98	71.772	ENSEBUG00000007485	-	82	80.000	Eptatretus_burgeri
ENSNBRG00000016714	-	100	89.053	ENSELUG00000001560	-	97	86.207	Esox_lucius
ENSNBRG00000016714	-	100	89.415	ENSELUG00000003521	pcbp3	100	89.415	Esox_lucius
ENSNBRG00000016714	-	100	84.731	ENSFALG00000003949	-	99	84.731	Ficedula_albicollis
ENSNBRG00000016714	-	98	73.925	ENSFALG00000004411	-	77	73.925	Ficedula_albicollis
ENSNBRG00000016714	-	97	87.812	ENSFHEG00000016615	pcbp3	97	87.812	Fundulus_heteroclitus
ENSNBRG00000016714	-	99	88.754	ENSFHEG00000006539	-	98	88.754	Fundulus_heteroclitus
ENSNBRG00000016714	-	96	72.941	ENSGMOG00000011992	pcbp3	96	72.965	Gadus_morhua
ENSNBRG00000016714	-	96	65.282	ENSGMOG00000008611	-	100	64.809	Gadus_morhua
ENSNBRG00000016714	-	95	82.675	ENSGALG00000013155	-	99	82.675	Gallus_gallus
ENSNBRG00000016714	-	99	82.271	ENSGALG00000004394	-	99	81.564	Gallus_gallus
ENSNBRG00000016714	-	100	89.645	ENSGAFG00000010274	-	100	89.645	Gambusia_affinis
ENSNBRG00000016714	-	98	86.957	ENSGAFG00000011430	pcbp3	98	86.957	Gambusia_affinis
ENSNBRG00000016714	-	99	83.862	ENSGACG00000002266	-	98	83.862	Gasterosteus_aculeatus
ENSNBRG00000016714	-	99	75.346	ENSGACG00000014955	-	97	77.839	Gasterosteus_aculeatus
ENSNBRG00000016714	-	87	79.859	ENSGAGG00000000271	-	100	81.295	Gopherus_agassizii
ENSNBRG00000016714	-	86	84.804	ENSGAGG00000006956	-	85	85.024	Gopherus_agassizii
ENSNBRG00000016714	-	100	88.547	ENSHBUG00000010697	pcbp3	100	88.547	Haplochromis_burtoni
ENSNBRG00000016714	-	100	90.828	ENSHBUG00000021782	-	100	90.828	Haplochromis_burtoni
ENSNBRG00000016714	-	100	89.356	ENSHCOG00000017868	pcbp3	100	89.356	Hippocampus_comes
ENSNBRG00000016714	-	99	87.009	ENSHCOG00000006067	-	98	86.707	Hippocampus_comes
ENSNBRG00000016714	-	99	89.474	ENSIPUG00000006238	pcbp3	98	89.474	Ictalurus_punctatus
ENSNBRG00000016714	-	100	89.385	ENSKMAG00000003046	pcbp3	100	89.385	Kryptolebias_marmoratus
ENSNBRG00000016714	-	99	89.939	ENSKMAG00000018530	-	100	88.757	Kryptolebias_marmoratus
ENSNBRG00000016714	-	98	85.759	ENSLBEG00000006201	pcbp3	96	87.461	Labrus_bergylta
ENSNBRG00000016714	-	100	86.866	ENSLBEG00000006542	-	100	86.866	Labrus_bergylta
ENSNBRG00000016714	-	99	73.458	ENSLACG00000010804	zgc:110045	77	73.458	Latimeria_chalumnae
ENSNBRG00000016714	-	93	83.051	ENSLACG00000010386	pcbp3	73	83.051	Latimeria_chalumnae
ENSNBRG00000016714	-	93	81.873	ENSLOCG00000005058	zgc:110045	79	81.873	Lepisosteus_oculatus
ENSNBRG00000016714	-	100	85.100	ENSLOCG00000009369	pcbp3	95	89.728	Lepisosteus_oculatus
ENSNBRG00000016714	-	99	88.615	ENSMAMG00000011620	-	98	88.923	Mastacembelus_armatus
ENSNBRG00000016714	-	95	89.457	ENSMAMG00000022336	pcbp3	93	89.457	Mastacembelus_armatus
ENSNBRG00000016714	-	100	89.045	ENSMZEG00005008993	pcbp3	100	89.045	Maylandia_zebra
ENSNBRG00000016714	-	100	99.697	ENSMZEG00005014882	-	100	99.697	Maylandia_zebra
ENSNBRG00000016714	-	98	73.925	ENSMGAG00000006794	-	77	73.925	Meleagris_gallopavo
ENSNBRG00000016714	-	94	78.028	ENSMGAG00000001883	-	96	77.714	Meleagris_gallopavo
ENSNBRG00000016714	-	95	85.139	ENSMMOG00000000730	pcbp3	88	85.139	Mola_mola
ENSNBRG00000016714	-	99	89.474	ENSMMOG00000005216	-	97	91.083	Mola_mola
ENSNBRG00000016714	-	74	80.000	ENSMODG00000027884	-	93	80.000	Monodelphis_domestica
ENSNBRG00000016714	-	100	91.954	ENSMALG00000000691	pcbp3	100	91.954	Monopterus_albus
ENSNBRG00000016714	-	100	79.310	ENSMPUG00000001779	-	91	79.310	Mustela_putorius_furo
ENSNBRG00000016714	-	94	84.571	ENSOPRG00000003431	-	99	84.571	Ochotona_princeps
ENSNBRG00000016714	-	97	82.920	ENSONIG00000012122	-	99	82.920	Oreochromis_niloticus
ENSNBRG00000016714	-	99	88.520	ENSONIG00000004611	-	97	90.062	Oreochromis_niloticus
ENSNBRG00000016714	-	100	84.731	ENSOCUG00000002696	-	91	84.731	Oryctolagus_cuniculus
ENSNBRG00000016714	-	95	87.539	ENSORLG00000000059	pcbp3	100	87.539	Oryzias_latipes
ENSNBRG00000016714	-	99	89.021	ENSORLG00000022739	-	99	89.021	Oryzias_latipes
ENSNBRG00000016714	-	98	84.802	ENSORLG00020012671	pcbp3	97	87.539	Oryzias_latipes_hni
ENSNBRG00000016714	-	99	89.783	ENSORLG00020006124	-	98	89.783	Oryzias_latipes_hni
ENSNBRG00000016714	-	98	84.802	ENSORLG00015000429	pcbp3	97	87.539	Oryzias_latipes_hsok
ENSNBRG00000016714	-	99	89.021	ENSORLG00015008051	-	99	89.021	Oryzias_latipes_hsok
ENSNBRG00000016714	-	99	89.474	ENSOMEG00000020162	-	97	90.764	Oryzias_melastigma
ENSNBRG00000016714	-	93	86.139	ENSOMEG00000020811	pcbp3	96	88.927	Oryzias_melastigma
ENSNBRG00000016714	-	99	79.396	ENSOGAG00000008044	-	99	77.446	Otolemur_garnettii
ENSNBRG00000016714	-	100	88.462	ENSPKIG00000019329	pcbp3	100	88.462	Paramormyrops_kingsleyae
ENSNBRG00000016714	-	80	88.333	ENSPKIG00000020913	-	84	85.561	Paramormyrops_kingsleyae
ENSNBRG00000016714	-	77	78.195	ENSPSIG00000008350	-	72	78.195	Pelodiscus_sinensis
ENSNBRG00000016714	-	99	75.731	ENSPSIG00000014970	-	98	74.854	Pelodiscus_sinensis
ENSNBRG00000016714	-	100	90.395	ENSPMGG00000022383	pcbp3	100	90.395	Periophthalmus_magnuspinnatus
ENSNBRG00000016714	-	99	65.361	ENSPMAG00000004551	pcbp3	90	66.769	Petromyzon_marinus
ENSNBRG00000016714	-	80	84.043	ENSPMAG00000004637	-	97	84.043	Petromyzon_marinus
ENSNBRG00000016714	-	100	84.527	ENSPCIG00000028092	-	95	89.426	Phascolarctos_cinereus
ENSNBRG00000016714	-	99	81.250	ENSPLAG00000011449	pcbp3	100	78.894	Poecilia_latipinna
ENSNBRG00000016714	-	99	88.822	ENSPLAG00000004074	-	92	88.822	Poecilia_latipinna
ENSNBRG00000016714	-	100	89.136	ENSPMEG00000021239	pcbp3	100	89.136	Poecilia_mexicana
ENSNBRG00000016714	-	100	92.169	ENSPMEG00000006653	-	100	92.169	Poecilia_mexicana
ENSNBRG00000016714	-	99	90.093	ENSPREG00000020585	-	98	90.093	Poecilia_reticulata
ENSNBRG00000016714	-	95	87.619	ENSPREG00000015736	pcbp3	99	87.619	Poecilia_reticulata
ENSNBRG00000016714	-	95	87.227	ENSPNYG00000012326	pcbp3	95	87.227	Pundamilia_nyererei
ENSNBRG00000016714	-	99	90.712	ENSPNYG00000013205	-	97	92.357	Pundamilia_nyererei
ENSNBRG00000016714	-	100	87.640	ENSPNAG00000008541	-	100	87.640	Pygocentrus_nattereri
ENSNBRG00000016714	-	99	87.613	ENSPNAG00000015104	pcbp3	98	87.613	Pygocentrus_nattereri
ENSNBRG00000016714	-	100	85.329	ENSRNOG00000001245	Pcbp3	99	85.329	Rattus_norvegicus
ENSNBRG00000016714	-	100	76.879	ENSRBIG00000028177	-	99	72.267	Rhinopithecus_bieti
ENSNBRG00000016714	-	99	82.235	ENSSHAG00000007890	-	99	81.662	Sarcophilus_harrisii
ENSNBRG00000016714	-	100	88.202	ENSSFOG00015014706	pcbp3	100	88.202	Scleropages_formosus
ENSNBRG00000016714	-	98	77.134	ENSSFOG00015007118	-	93	79.808	Scleropages_formosus
ENSNBRG00000016714	-	100	89.053	ENSSFOG00015010205	pcbp3	99	90.533	Scleropages_formosus
ENSNBRG00000016714	-	95	89.776	ENSSMAG00000011929	pcbp3	97	89.776	Scophthalmus_maximus
ENSNBRG00000016714	-	100	89.349	ENSSMAG00000003135	-	100	89.349	Scophthalmus_maximus
ENSNBRG00000016714	-	97	90.504	ENSSDUG00000011608	pcbp3	99	90.504	Seriola_dumerili
ENSNBRG00000016714	-	100	92.836	ENSSDUG00000008502	-	100	92.836	Seriola_dumerili
ENSNBRG00000016714	-	97	90.504	ENSSLDG00000008518	pcbp3	99	90.504	Seriola_lalandi_dorsalis
ENSNBRG00000016714	-	100	90.237	ENSSLDG00000020161	-	100	90.237	Seriola_lalandi_dorsalis
ENSNBRG00000016714	-	98	75.000	ENSSPUG00000013214	-	91	81.973	Sphenodon_punctatus
ENSNBRG00000016714	-	91	88.487	ENSSPAG00000004190	-	100	88.487	Stegastes_partitus
ENSNBRG00000016714	-	100	80.170	ENSSPAG00000023341	-	100	80.170	Stegastes_partitus
ENSNBRG00000016714	-	100	79.656	ENSTGUG00000003316	-	99	79.656	Taeniopygia_guttata
ENSNBRG00000016714	-	99	79.394	ENSTGUG00000008158	-	99	79.394	Taeniopygia_guttata
ENSNBRG00000016714	-	100	87.887	ENSTRUG00000013604	pcbp3	100	87.887	Takifugu_rubripes
ENSNBRG00000016714	-	93	89.474	ENSTRUG00000006280	-	92	89.803	Takifugu_rubripes
ENSNBRG00000016714	-	99	80.556	ENSTTRG00000015075	-	99	79.614	Tursiops_truncatus
ENSNBRG00000016714	-	93	74.425	ENSXETG00000010491	pcbp2	75	74.425	Xenopus_tropicalis
ENSNBRG00000016714	-	100	80.516	ENSXETG00000011483	pcbp1	99	80.516	Xenopus_tropicalis
ENSNBRG00000016714	-	100	89.136	ENSXCOG00000020481	pcbp3	100	89.136	Xiphophorus_couchianus
ENSNBRG00000016714	-	100	89.385	ENSXMAG00000008175	pcbp3	100	89.385	Xiphophorus_maculatus
ENSNBRG00000016714	-	100	89.941	ENSXMAG00000028711	-	100	89.941	Xiphophorus_maculatus