EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000017089 (Gene tree)
Gene ID: 102787515
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival of motor neuron-related-splicing factor 30-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 8458 bases
Position: chrJH422278.1:11584155-11592612
Accession: 102787515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000022293	TUDOR	PF00567.24	0.00035	1	1
ENSNBRP00000022293	SMN	PF06003.12	6.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000022878	-	3895	XM_006783740	ENSNBRP00000022293	238 (aa)	XP_006783803	UPI00022AF2E7

Gene Model

Click here to download ENSNBRG00000017089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000017089's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000017089	smndc1	100	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSNBRG00000017089	smndc1	100	91.176	ENSAPOG00000021772	smndc1	100	91.176	Acanthochromis_polyacanthus
ENSNBRG00000017089	smndc1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSNBRG00000017089	smndc1	100	96.639	ENSACIG00000004819	smndc1	100	96.639	Amphilophus_citrinellus
ENSNBRG00000017089	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSNBRG00000017089	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSNBRG00000017089	smndc1	100	91.597	ENSATEG00000006830	smndc1	100	91.597	Anabas_testudineus
ENSNBRG00000017089	smndc1	83	77.273	ENSAPLG00000004322	SMNDC1	100	77.273	Anas_platyrhynchos
ENSNBRG00000017089	smndc1	100	76.891	ENSACAG00000005983	SMNDC1	100	76.891	Anolis_carolinensis
ENSNBRG00000017089	smndc1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSNBRG00000017089	smndc1	100	99.160	ENSACLG00000016360	smndc1	100	99.160	Astatotilapia_calliptera
ENSNBRG00000017089	smndc1	100	82.353	ENSAMXG00000020310	smndc1	100	82.353	Astyanax_mexicanus
ENSNBRG00000017089	smndc1	100	76.050	ENSBTAG00000000551	SMNDC1	100	76.050	Bos_taurus
ENSNBRG00000017089	smndc1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSNBRG00000017089	smndc1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSNBRG00000017089	smndc1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSNBRG00000017089	smndc1	100	76.050	ENSCHIG00000010604	SMNDC1	100	76.050	Capra_hircus
ENSNBRG00000017089	smndc1	100	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSNBRG00000017089	smndc1	84	72.139	ENSCAPG00000009132	SMNDC1	100	72.139	Cavia_aperea
ENSNBRG00000017089	smndc1	100	75.630	ENSCPOG00000031666	SMNDC1	100	75.630	Cavia_porcellus
ENSNBRG00000017089	smndc1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSNBRG00000017089	smndc1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSNBRG00000017089	smndc1	100	75.630	ENSCLAG00000002838	SMNDC1	100	75.630	Chinchilla_lanigera
ENSNBRG00000017089	smndc1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSNBRG00000017089	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSNBRG00000017089	smndc1	100	76.050	ENSCPBG00000012837	SMNDC1	100	76.050	Chrysemys_picta_bellii
ENSNBRG00000017089	smndc1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSNBRG00000017089	smndc1	100	58.824	ENSCANG00000036994	-	100	58.824	Colobus_angolensis_palliatus
ENSNBRG00000017089	smndc1	100	69.748	ENSCANG00000034620	-	100	70.168	Colobus_angolensis_palliatus
ENSNBRG00000017089	smndc1	100	76.471	ENSCGRG00001012973	Smndc1	100	76.471	Cricetulus_griseus_chok1gshd
ENSNBRG00000017089	smndc1	100	76.471	ENSCGRG00000012396	Smndc1	100	76.471	Cricetulus_griseus_crigri
ENSNBRG00000017089	smndc1	100	82.353	ENSCSEG00000015621	smndc1	100	82.353	Cynoglossus_semilaevis
ENSNBRG00000017089	smndc1	100	86.555	ENSCVAG00000020432	smndc1	100	86.555	Cyprinodon_variegatus
ENSNBRG00000017089	smndc1	100	82.845	ENSDARG00000056235	smndc1	100	82.845	Danio_rerio
ENSNBRG00000017089	smndc1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSNBRG00000017089	smndc1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSNBRG00000017089	smndc1	95	42.169	FBgn0039977	CG17454	98	43.775	Drosophila_melanogaster
ENSNBRG00000017089	smndc1	100	67.635	ENSEBUG00000010929	smndc1	100	69.295	Eptatretus_burgeri
ENSNBRG00000017089	smndc1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSNBRG00000017089	smndc1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSNBRG00000017089	smndc1	83	55.051	ENSEEUG00000013407	-	100	55.051	Erinaceus_europaeus
ENSNBRG00000017089	smndc1	100	84.034	ENSELUG00000000227	smndc1	100	84.034	Esox_lucius
ENSNBRG00000017089	smndc1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSNBRG00000017089	smndc1	100	77.731	ENSFALG00000002306	SMNDC1	100	77.731	Ficedula_albicollis
ENSNBRG00000017089	smndc1	100	75.630	ENSFDAG00000006468	SMNDC1	100	75.630	Fukomys_damarensis
ENSNBRG00000017089	smndc1	100	88.235	ENSFHEG00000020150	smndc1	100	88.235	Fundulus_heteroclitus
ENSNBRG00000017089	smndc1	100	81.933	ENSGMOG00000016585	smndc1	100	81.933	Gadus_morhua
ENSNBRG00000017089	smndc1	100	77.731	ENSGALG00000008561	SMNDC1	100	77.731	Gallus_gallus
ENSNBRG00000017089	smndc1	100	89.076	ENSGAFG00000011582	smndc1	100	89.076	Gambusia_affinis
ENSNBRG00000017089	smndc1	100	89.496	ENSGACG00000009468	smndc1	100	89.496	Gasterosteus_aculeatus
ENSNBRG00000017089	smndc1	100	76.050	ENSGAGG00000024547	SMNDC1	100	76.050	Gopherus_agassizii
ENSNBRG00000017089	smndc1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSNBRG00000017089	smndc1	100	99.160	ENSHBUG00000017596	smndc1	100	99.160	Haplochromis_burtoni
ENSNBRG00000017089	smndc1	100	54.918	ENSHGLG00000001157	-	100	54.098	Heterocephalus_glaber_female
ENSNBRG00000017089	smndc1	100	75.630	ENSHGLG00000013390	-	100	75.630	Heterocephalus_glaber_female
ENSNBRG00000017089	smndc1	100	75.630	ENSHGLG00100004814	-	100	75.630	Heterocephalus_glaber_male
ENSNBRG00000017089	smndc1	100	60.656	ENSHGLG00100004278	-	100	59.677	Heterocephalus_glaber_male
ENSNBRG00000017089	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSNBRG00000017089	smndc1	100	84.034	ENSIPUG00000004217	smndc1	100	84.034	Ictalurus_punctatus
ENSNBRG00000017089	smndc1	100	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSNBRG00000017089	smndc1	100	75.630	ENSJJAG00000019974	Smndc1	100	75.630	Jaculus_jaculus
ENSNBRG00000017089	smndc1	100	87.815	ENSKMAG00000020134	smndc1	100	87.815	Kryptolebias_marmoratus
ENSNBRG00000017089	smndc1	100	87.815	ENSLBEG00000004598	smndc1	100	87.815	Labrus_bergylta
ENSNBRG00000017089	smndc1	100	74.790	ENSLACG00000007784	SMNDC1	100	74.790	Latimeria_chalumnae
ENSNBRG00000017089	smndc1	100	81.513	ENSLOCG00000012355	smndc1	100	81.513	Lepisosteus_oculatus
ENSNBRG00000017089	smndc1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSNBRG00000017089	smndc1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSNBRG00000017089	smndc1	100	62.605	ENSMFAG00000038381	-	100	62.605	Macaca_fascicularis
ENSNBRG00000017089	smndc1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSNBRG00000017089	smndc1	100	62.605	ENSMMUG00000045875	-	100	62.605	Macaca_mulatta
ENSNBRG00000017089	smndc1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSNBRG00000017089	smndc1	100	66.387	ENSMNEG00000033853	-	100	66.387	Macaca_nemestrina
ENSNBRG00000017089	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSNBRG00000017089	smndc1	89	88.263	ENSMAMG00000018233	smndc1	87	88.263	Mastacembelus_armatus
ENSNBRG00000017089	smndc1	100	99.160	ENSMZEG00005027510	smndc1	100	99.160	Maylandia_zebra
ENSNBRG00000017089	smndc1	91	73.611	ENSMGAG00000010777	SMNDC1	91	73.611	Meleagris_gallopavo
ENSNBRG00000017089	smndc1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSNBRG00000017089	smndc1	99	62.025	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSNBRG00000017089	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSNBRG00000017089	smndc1	100	75.210	ENSMICG00000027336	-	100	75.210	Microcebus_murinus
ENSNBRG00000017089	smndc1	100	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSNBRG00000017089	smndc1	100	86.975	ENSMMOG00000008856	smndc1	100	86.975	Mola_mola
ENSNBRG00000017089	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSNBRG00000017089	smndc1	100	89.496	ENSMALG00000017598	smndc1	100	89.496	Monopterus_albus
ENSNBRG00000017089	smndc1	100	75.210	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.210	Mus_caroli
ENSNBRG00000017089	smndc1	100	75.630	ENSMUSG00000025024	Smndc1	100	75.630	Mus_musculus
ENSNBRG00000017089	smndc1	100	75.630	MGP_PahariEiJ_G0014560	Smndc1	100	75.630	Mus_pahari
ENSNBRG00000017089	smndc1	100	75.630	MGP_SPRETEiJ_G0023993	Smndc1	100	75.630	Mus_spretus
ENSNBRG00000017089	smndc1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSNBRG00000017089	smndc1	100	76.050	ENSMLUG00000016007	SMNDC1	100	76.050	Myotis_lucifugus
ENSNBRG00000017089	smndc1	100	76.471	ENSNGAG00000006833	Smndc1	100	76.471	Nannospalax_galili
ENSNBRG00000017089	smndc1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSNBRG00000017089	smndc1	70	58.434	ENSMEUG00000010120	-	98	53.535	Notamacropus_eugenii
ENSNBRG00000017089	smndc1	100	75.630	ENSOPRG00000015348	SMNDC1	100	75.630	Ochotona_princeps
ENSNBRG00000017089	smndc1	100	54.622	ENSODEG00000007594	-	100	52.521	Octodon_degus
ENSNBRG00000017089	smndc1	100	100.000	ENSONIG00000000434	smndc1	100	100.000	Oreochromis_niloticus
ENSNBRG00000017089	smndc1	100	76.050	ENSOANG00000001598	SMNDC1	100	76.050	Ornithorhynchus_anatinus
ENSNBRG00000017089	smndc1	100	56.303	ENSOCUG00000012274	-	100	58.824	Oryctolagus_cuniculus
ENSNBRG00000017089	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSNBRG00000017089	smndc1	100	81.092	ENSORLG00000005934	smndc1	95	81.092	Oryzias_latipes
ENSNBRG00000017089	smndc1	100	81.092	ENSORLG00020008796	smndc1	95	81.092	Oryzias_latipes_hni
ENSNBRG00000017089	smndc1	100	80.672	ENSORLG00015013666	smndc1	100	80.672	Oryzias_latipes_hsok
ENSNBRG00000017089	smndc1	100	80.252	ENSOMEG00000007590	smndc1	100	80.252	Oryzias_melastigma
ENSNBRG00000017089	smndc1	100	76.050	ENSOGAG00000000571	SMNDC1	100	76.050	Otolemur_garnettii
ENSNBRG00000017089	smndc1	100	76.050	ENSOARG00000009500	SMNDC1	100	76.050	Ovis_aries
ENSNBRG00000017089	smndc1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSNBRG00000017089	smndc1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSNBRG00000017089	smndc1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSNBRG00000017089	smndc1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSNBRG00000017089	smndc1	100	71.429	ENSPANG00000031346	-	100	71.429	Papio_anubis
ENSNBRG00000017089	smndc1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSNBRG00000017089	smndc1	100	79.412	ENSPKIG00000017164	smndc1	100	80.833	Paramormyrops_kingsleyae
ENSNBRG00000017089	smndc1	100	76.050	ENSPSIG00000012257	SMNDC1	100	76.050	Pelodiscus_sinensis
ENSNBRG00000017089	smndc1	100	82.353	ENSPMGG00000015651	smndc1	100	82.353	Periophthalmus_magnuspinnatus
ENSNBRG00000017089	smndc1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSNBRG00000017089	smndc1	100	67.213	ENSPMAG00000007705	smndc1	100	67.213	Petromyzon_marinus
ENSNBRG00000017089	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSNBRG00000017089	smndc1	97	57.826	ENSPCIG00000009693	-	100	57.826	Phascolarctos_cinereus
ENSNBRG00000017089	smndc1	100	89.076	ENSPFOG00000017113	smndc1	100	89.076	Poecilia_formosa
ENSNBRG00000017089	smndc1	100	88.235	ENSPLAG00000010372	smndc1	100	88.235	Poecilia_latipinna
ENSNBRG00000017089	smndc1	100	89.076	ENSPMEG00000012288	smndc1	100	89.076	Poecilia_mexicana
ENSNBRG00000017089	smndc1	100	88.655	ENSPREG00000012279	smndc1	100	88.655	Poecilia_reticulata
ENSNBRG00000017089	smndc1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSNBRG00000017089	smndc1	81	71.503	ENSPCAG00000016183	SMNDC1	100	71.503	Procavia_capensis
ENSNBRG00000017089	smndc1	100	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSNBRG00000017089	smndc1	100	59.664	ENSPVAG00000004368	SMNDC1	100	59.664	Pteropus_vampyrus
ENSNBRG00000017089	smndc1	83	98.990	ENSPNYG00000024093	smndc1	86	98.990	Pundamilia_nyererei
ENSNBRG00000017089	smndc1	100	81.092	ENSPNAG00000025285	smndc1	100	81.092	Pygocentrus_nattereri
ENSNBRG00000017089	smndc1	100	75.210	ENSRNOG00000014833	Smndc1	100	75.210	Rattus_norvegicus
ENSNBRG00000017089	smndc1	100	62.185	ENSRBIG00000032452	-	100	62.185	Rhinopithecus_bieti
ENSNBRG00000017089	smndc1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSNBRG00000017089	smndc1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSNBRG00000017089	smndc1	100	62.185	ENSRROG00000039125	-	100	62.185	Rhinopithecus_roxellana
ENSNBRG00000017089	smndc1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSNBRG00000017089	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSNBRG00000017089	smndc1	100	78.992	ENSSFOG00015008311	smndc1	100	78.992	Scleropages_formosus
ENSNBRG00000017089	smndc1	100	89.076	ENSSMAG00000020118	smndc1	100	89.076	Scophthalmus_maximus
ENSNBRG00000017089	smndc1	100	91.176	ENSSDUG00000015330	smndc1	100	91.176	Seriola_dumerili
ENSNBRG00000017089	smndc1	100	90.756	ENSSLDG00000017325	smndc1	100	90.756	Seriola_lalandi_dorsalis
ENSNBRG00000017089	smndc1	100	75.630	ENSSARG00000006063	SMNDC1	100	75.630	Sorex_araneus
ENSNBRG00000017089	smndc1	100	77.311	ENSSPUG00000004574	SMNDC1	100	77.311	Sphenodon_punctatus
ENSNBRG00000017089	smndc1	100	90.336	ENSSPAG00000000338	smndc1	100	90.336	Stegastes_partitus
ENSNBRG00000017089	smndc1	100	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSNBRG00000017089	smndc1	100	77.731	ENSTGUG00000010599	SMNDC1	100	77.731	Taeniopygia_guttata
ENSNBRG00000017089	smndc1	100	83.193	ENSTRUG00000023281	smndc1	100	83.193	Takifugu_rubripes
ENSNBRG00000017089	smndc1	100	84.034	ENSTNIG00000013331	smndc1	100	84.034	Tetraodon_nigroviridis
ENSNBRG00000017089	smndc1	100	75.630	ENSTBEG00000014337	SMNDC1	100	75.630	Tupaia_belangeri
ENSNBRG00000017089	smndc1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSNBRG00000017089	smndc1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSNBRG00000017089	smndc1	83	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSNBRG00000017089	smndc1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSNBRG00000017089	smndc1	60	61.972	ENSXETG00000015415	SMNDC1	100	61.972	Xenopus_tropicalis
ENSNBRG00000017089	smndc1	100	88.655	ENSXCOG00000009159	smndc1	100	88.655	Xiphophorus_couchianus
ENSNBRG00000017089	smndc1	100	89.496	ENSXMAG00000012755	smndc1	100	89.496	Xiphophorus_maculatus