EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000017370 (Gene tree)
Gene ID: -
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: U6 snRNA-associated Sm-like protein LSm1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 657 bases
Position: chrJH422421.1:240757-241413
Accession: 102797013
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000022662	LSM	PF01423.22	2.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000023258	-	351	XM_006805876	ENSNBRP00000022662	116 (aa)	XP_006805939	-

Gene Model

Click here to download ENSNBRG00000017370's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000017370's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000017370	lsm1	55	33.846	ENSNBRG00000014441	lsm8	68	33.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000017370	lsm1	66	92.208	ENSG00000175324	LSM1	89	89.744	Homo_sapiens
ENSNBRG00000017370	lsm1	66	100.000	ENSAPOG00000010833	lsm1	58	100.000	Acanthochromis_polyacanthus
ENSNBRG00000017370	lsm1	66	92.208	ENSAMEG00000011141	LSM1	58	92.208	Ailuropoda_melanoleuca
ENSNBRG00000017370	lsm1	100	78.512	ENSACIG00000019593	lsm1	100	78.512	Amphilophus_citrinellus
ENSNBRG00000017370	lsm1	68	100.000	ENSAOCG00000017997	-	62	100.000	Amphiprion_ocellaris
ENSNBRG00000017370	lsm1	66	100.000	ENSAOCG00000017096	lsm1	58	100.000	Amphiprion_ocellaris
ENSNBRG00000017370	lsm1	66	100.000	ENSAPEG00000011669	lsm1	58	100.000	Amphiprion_percula
ENSNBRG00000017370	lsm1	66	100.000	ENSATEG00000022266	lsm1	58	100.000	Anabas_testudineus
ENSNBRG00000017370	lsm1	66	92.208	ENSANAG00000027785	LSM1	89	89.744	Aotus_nancymaae
ENSNBRG00000017370	lsm1	66	100.000	ENSACLG00000011400	lsm1	58	100.000	Astatotilapia_calliptera
ENSNBRG00000017370	lsm1	66	92.208	ENSAMXG00000005441	lsm1	58	92.208	Astyanax_mexicanus
ENSNBRG00000017370	lsm1	66	92.208	ENSBTAG00000001612	LSM1	58	92.208	Bos_taurus
ENSNBRG00000017370	lsm1	93	47.706	WBGene00003076	lsm-1	84	47.706	Caenorhabditis_elegans
ENSNBRG00000017370	lsm1	66	92.208	ENSCJAG00000048015	LSM1	89	89.744	Callithrix_jacchus
ENSNBRG00000017370	lsm1	66	92.208	ENSCAFG00000006113	LSM1	58	92.208	Canis_familiaris
ENSNBRG00000017370	lsm1	66	92.208	ENSCAFG00020001822	LSM1	58	92.208	Canis_lupus_dingo
ENSNBRG00000017370	lsm1	66	92.208	ENSCHIG00000013194	LSM1	58	92.208	Capra_hircus
ENSNBRG00000017370	lsm1	66	92.208	ENSTSYG00000010394	LSM1	89	89.744	Carlito_syrichta
ENSNBRG00000017370	lsm1	66	92.208	ENSCPOG00000032671	LSM1	58	92.208	Cavia_porcellus
ENSNBRG00000017370	lsm1	66	92.208	ENSCCAG00000037171	LSM1	89	89.744	Cebus_capucinus
ENSNBRG00000017370	lsm1	66	92.208	ENSCATG00000020377	LSM1	89	89.744	Cercocebus_atys
ENSNBRG00000017370	lsm1	66	92.208	ENSCLAG00000001137	LSM1	58	92.208	Chinchilla_lanigera
ENSNBRG00000017370	lsm1	66	92.208	ENSCSAG00000015485	LSM1	58	92.208	Chlorocebus_sabaeus
ENSNBRG00000017370	lsm1	66	92.208	ENSCHOG00000006030	LSM1	58	92.208	Choloepus_hoffmanni
ENSNBRG00000017370	lsm1	71	75.610	ENSCING00000013536	-	62	75.610	Ciona_intestinalis
ENSNBRG00000017370	lsm1	66	92.208	ENSCANG00000019173	LSM1	89	89.744	Colobus_angolensis_palliatus
ENSNBRG00000017370	lsm1	61	83.099	ENSCGRG00001002259	-	62	83.099	Cricetulus_griseus_chok1gshd
ENSNBRG00000017370	lsm1	66	92.208	ENSCGRG00001024560	-	58	92.208	Cricetulus_griseus_chok1gshd
ENSNBRG00000017370	lsm1	61	83.099	ENSCGRG00000013603	-	62	83.099	Cricetulus_griseus_crigri
ENSNBRG00000017370	lsm1	66	92.208	ENSCGRG00000006554	-	58	92.208	Cricetulus_griseus_crigri
ENSNBRG00000017370	lsm1	66	98.701	ENSCSEG00000008319	lsm1	53	98.701	Cynoglossus_semilaevis
ENSNBRG00000017370	lsm1	66	100.000	ENSCSEG00000010570	lsm1	53	100.000	Cynoglossus_semilaevis
ENSNBRG00000017370	lsm1	66	98.701	ENSCVAG00000003871	lsm1	58	98.701	Cyprinodon_variegatus
ENSNBRG00000017370	lsm1	66	92.208	ENSDARG00000043177	lsm1	58	92.208	Danio_rerio
ENSNBRG00000017370	lsm1	66	85.714	ENSDNOG00000030989	-	57	85.714	Dasypus_novemcinctus
ENSNBRG00000017370	lsm1	66	92.208	ENSDNOG00000046387	-	58	92.208	Dasypus_novemcinctus
ENSNBRG00000017370	lsm1	66	90.909	ENSDNOG00000032911	-	58	90.909	Dasypus_novemcinctus
ENSNBRG00000017370	lsm1	66	70.130	ENSDNOG00000046620	-	65	70.130	Dasypus_novemcinctus
ENSNBRG00000017370	lsm1	66	92.208	ENSDORG00000028172	Lsm1	58	92.208	Dipodomys_ordii
ENSNBRG00000017370	lsm1	66	72.727	FBgn0261067	LSm1	56	72.727	Drosophila_melanogaster
ENSNBRG00000017370	lsm1	66	92.208	ENSEASG00005016677	LSM1	58	92.208	Equus_asinus_asinus
ENSNBRG00000017370	lsm1	66	92.208	ENSECAG00000010461	LSM1	58	92.208	Equus_caballus
ENSNBRG00000017370	lsm1	66	92.208	ENSEEUG00000015181	LSM1	78	92.208	Erinaceus_europaeus
ENSNBRG00000017370	lsm1	66	97.403	ENSELUG00000002322	lsm1	58	97.403	Esox_lucius
ENSNBRG00000017370	lsm1	66	90.909	ENSELUG00000023374	lsm1	58	90.909	Esox_lucius
ENSNBRG00000017370	lsm1	66	92.208	ENSFCAG00000039335	LSM1	89	89.744	Felis_catus
ENSNBRG00000017370	lsm1	53	91.935	ENSFALG00000006723	LSM1	53	91.935	Ficedula_albicollis
ENSNBRG00000017370	lsm1	66	92.208	ENSFDAG00000007658	LSM1	58	92.208	Fukomys_damarensis
ENSNBRG00000017370	lsm1	66	98.701	ENSFHEG00000009556	lsm1	58	98.701	Fundulus_heteroclitus
ENSNBRG00000017370	lsm1	66	97.403	ENSGMOG00000016651	lsm1	57	97.403	Gadus_morhua
ENSNBRG00000017370	lsm1	66	92.208	ENSGALG00000003245	LSM1	58	92.208	Gallus_gallus
ENSNBRG00000017370	lsm1	66	98.701	ENSGAFG00000011355	lsm1	58	98.701	Gambusia_affinis
ENSNBRG00000017370	lsm1	66	100.000	ENSGACG00000011763	lsm1	57	100.000	Gasterosteus_aculeatus
ENSNBRG00000017370	lsm1	66	93.506	ENSGAGG00000024065	LSM1	58	93.506	Gopherus_agassizii
ENSNBRG00000017370	lsm1	66	92.208	ENSGGOG00000022658	LSM1	89	89.744	Gorilla_gorilla
ENSNBRG00000017370	lsm1	66	100.000	ENSHBUG00000010897	lsm1	58	100.000	Haplochromis_burtoni
ENSNBRG00000017370	lsm1	66	92.208	ENSHGLG00000005711	LSM1	58	92.208	Heterocephalus_glaber_female
ENSNBRG00000017370	lsm1	66	68.831	ENSHGLG00000017574	-	55	68.831	Heterocephalus_glaber_female
ENSNBRG00000017370	lsm1	66	68.831	ENSHGLG00100012152	-	55	68.831	Heterocephalus_glaber_male
ENSNBRG00000017370	lsm1	66	92.208	ENSHGLG00100017660	LSM1	58	92.208	Heterocephalus_glaber_male
ENSNBRG00000017370	lsm1	66	98.701	ENSHCOG00000017233	lsm1	58	98.701	Hippocampus_comes
ENSNBRG00000017370	lsm1	66	92.208	ENSIPUG00000002312	LSM1	58	92.208	Ictalurus_punctatus
ENSNBRG00000017370	lsm1	70	90.123	ENSSTOG00000026870	LSM1	99	90.123	Ictidomys_tridecemlineatus
ENSNBRG00000017370	lsm1	66	92.208	ENSJJAG00000014605	-	58	92.208	Jaculus_jaculus
ENSNBRG00000017370	lsm1	66	100.000	ENSKMAG00000003016	lsm1	58	100.000	Kryptolebias_marmoratus
ENSNBRG00000017370	lsm1	66	100.000	ENSLBEG00000022352	lsm1	58	100.000	Labrus_bergylta
ENSNBRG00000017370	lsm1	53	90.323	ENSLACG00000010947	LSM1	51	90.323	Latimeria_chalumnae
ENSNBRG00000017370	lsm1	66	92.208	ENSLOCG00000015149	lsm1	58	92.208	Lepisosteus_oculatus
ENSNBRG00000017370	lsm1	66	92.208	ENSLAFG00000003534	LSM1	58	92.208	Loxodonta_africana
ENSNBRG00000017370	lsm1	66	92.208	ENSMFAG00000032661	LSM1	89	89.744	Macaca_fascicularis
ENSNBRG00000017370	lsm1	66	92.208	ENSMLEG00000034535	LSM1	89	89.744	Mandrillus_leucophaeus
ENSNBRG00000017370	lsm1	66	100.000	ENSMAMG00000007464	lsm1	58	100.000	Mastacembelus_armatus
ENSNBRG00000017370	lsm1	66	100.000	ENSMZEG00005010321	lsm1	58	100.000	Maylandia_zebra
ENSNBRG00000017370	lsm1	66	92.208	ENSMGAG00000002125	LSM1	58	92.208	Meleagris_gallopavo
ENSNBRG00000017370	lsm1	66	92.208	ENSMICG00000030726	LSM1	89	89.744	Microcebus_murinus
ENSNBRG00000017370	lsm1	66	92.208	ENSMOCG00000022817	Lsm1	58	92.208	Microtus_ochrogaster
ENSNBRG00000017370	lsm1	66	100.000	ENSMMOG00000015466	lsm1	58	100.000	Mola_mola
ENSNBRG00000017370	lsm1	66	93.506	ENSMODG00000010732	-	58	93.506	Monodelphis_domestica
ENSNBRG00000017370	lsm1	68	100.000	ENSMALG00000001478	lsm1	84	100.000	Monopterus_albus
ENSNBRG00000017370	lsm1	66	92.208	MGP_CAROLIEiJ_G0030930	Lsm1	58	92.208	Mus_caroli
ENSNBRG00000017370	lsm1	66	92.208	ENSMUSG00000037296	Lsm1	91	89.744	Mus_musculus
ENSNBRG00000017370	lsm1	66	92.208	MGP_PahariEiJ_G0021400	Lsm1	58	92.208	Mus_pahari
ENSNBRG00000017370	lsm1	66	92.208	MGP_SPRETEiJ_G0032049	Lsm1	58	92.208	Mus_spretus
ENSNBRG00000017370	lsm1	66	92.208	ENSMPUG00000009883	LSM1	58	92.208	Mustela_putorius_furo
ENSNBRG00000017370	lsm1	66	92.208	ENSMLUG00000003734	LSM1	58	92.208	Myotis_lucifugus
ENSNBRG00000017370	lsm1	66	90.909	ENSNGAG00000003753	Lsm1	58	90.909	Nannospalax_galili
ENSNBRG00000017370	lsm1	66	92.208	ENSNLEG00000029390	LSM1	89	89.744	Nomascus_leucogenys
ENSNBRG00000017370	lsm1	66	93.506	ENSMEUG00000014077	LSM1	58	93.506	Notamacropus_eugenii
ENSNBRG00000017370	lsm1	53	93.443	ENSOPRG00000000333	LSM1	52	93.443	Ochotona_princeps
ENSNBRG00000017370	lsm1	66	92.208	ENSODEG00000004834	LSM1	58	92.208	Octodon_degus
ENSNBRG00000017370	lsm1	66	100.000	ENSONIG00000010782	lsm1	58	100.000	Oreochromis_niloticus
ENSNBRG00000017370	lsm1	66	93.506	ENSOANG00000003256	LSM1	58	93.506	Ornithorhynchus_anatinus
ENSNBRG00000017370	lsm1	66	92.208	ENSOCUG00000015399	LSM1	58	92.208	Oryctolagus_cuniculus
ENSNBRG00000017370	lsm1	66	100.000	ENSORLG00000030288	lsm1	58	100.000	Oryzias_latipes
ENSNBRG00000017370	lsm1	66	100.000	ENSORLG00020003941	lsm1	58	100.000	Oryzias_latipes_hni
ENSNBRG00000017370	lsm1	66	100.000	ENSORLG00020006213	-	50	100.000	Oryzias_latipes_hni
ENSNBRG00000017370	lsm1	66	100.000	ENSORLG00015018350	lsm1	58	100.000	Oryzias_latipes_hsok
ENSNBRG00000017370	lsm1	66	100.000	ENSOMEG00000012454	lsm1	58	100.000	Oryzias_melastigma
ENSNBRG00000017370	lsm1	66	92.208	ENSOGAG00000015161	LSM1	58	92.208	Otolemur_garnettii
ENSNBRG00000017370	lsm1	66	92.208	ENSOARG00000001317	LSM1	58	92.208	Ovis_aries
ENSNBRG00000017370	lsm1	66	92.208	ENSPPAG00000032279	LSM1	89	89.744	Pan_paniscus
ENSNBRG00000017370	lsm1	66	92.208	ENSPPRG00000014172	-	89	89.744	Panthera_pardus
ENSNBRG00000017370	lsm1	66	92.208	ENSPTIG00000010289	LSM1	89	89.744	Panthera_tigris_altaica
ENSNBRG00000017370	lsm1	66	92.208	ENSPTRG00000020169	LSM1	89	89.744	Pan_troglodytes
ENSNBRG00000017370	lsm1	66	92.208	ENSPANG00000008814	LSM1	89	89.744	Papio_anubis
ENSNBRG00000017370	lsm1	66	93.506	ENSPKIG00000001839	lsm1	58	93.506	Paramormyrops_kingsleyae
ENSNBRG00000017370	lsm1	66	85.714	ENSPKIG00000019409	LSM1	57	85.714	Paramormyrops_kingsleyae
ENSNBRG00000017370	lsm1	63	84.932	ENSPSIG00000012563	LSM1	55	84.932	Pelodiscus_sinensis
ENSNBRG00000017370	lsm1	73	92.941	ENSPMGG00000022999	lsm1	81	92.941	Periophthalmus_magnuspinnatus
ENSNBRG00000017370	lsm1	66	93.506	ENSPCIG00000008880	LSM1	58	93.506	Phascolarctos_cinereus
ENSNBRG00000017370	lsm1	66	98.701	ENSPFOG00000016029	lsm1	58	98.701	Poecilia_formosa
ENSNBRG00000017370	lsm1	66	98.701	ENSPLAG00000007879	lsm1	58	98.701	Poecilia_latipinna
ENSNBRG00000017370	lsm1	66	98.701	ENSPMEG00000023550	lsm1	58	98.701	Poecilia_mexicana
ENSNBRG00000017370	lsm1	66	98.701	ENSPREG00000009574	lsm1	58	98.701	Poecilia_reticulata
ENSNBRG00000017370	lsm1	66	92.208	ENSPPYG00000018521	LSM1	58	92.208	Pongo_abelii
ENSNBRG00000017370	lsm1	66	92.208	ENSPCOG00000020901	-	89	89.744	Propithecus_coquereli
ENSNBRG00000017370	lsm1	66	92.208	ENSPVAG00000006016	LSM1	58	92.208	Pteropus_vampyrus
ENSNBRG00000017370	lsm1	66	100.000	ENSPNYG00000018067	lsm1	58	100.000	Pundamilia_nyererei
ENSNBRG00000017370	lsm1	66	92.208	ENSPNAG00000013707	lsm1	58	92.208	Pygocentrus_nattereri
ENSNBRG00000017370	lsm1	66	90.909	ENSRNOG00000015375	Lsm1	58	90.909	Rattus_norvegicus
ENSNBRG00000017370	lsm1	66	92.208	ENSRBIG00000027449	LSM1	89	89.744	Rhinopithecus_bieti
ENSNBRG00000017370	lsm1	66	92.208	ENSRROG00000036074	LSM1	89	89.744	Rhinopithecus_roxellana
ENSNBRG00000017370	lsm1	66	93.506	ENSSHAG00000017260	LSM1	58	93.506	Sarcophilus_harrisii
ENSNBRG00000017370	lsm1	66	93.506	ENSSFOG00015019528	lsm1	58	93.506	Scleropages_formosus
ENSNBRG00000017370	lsm1	66	100.000	ENSSMAG00000004930	lsm1	58	100.000	Scophthalmus_maximus
ENSNBRG00000017370	lsm1	66	100.000	ENSSDUG00000021823	lsm1	58	100.000	Seriola_dumerili
ENSNBRG00000017370	lsm1	66	100.000	ENSSLDG00000012154	lsm1	58	100.000	Seriola_lalandi_dorsalis
ENSNBRG00000017370	lsm1	66	93.506	ENSSPUG00000014878	LSM1	58	93.506	Sphenodon_punctatus
ENSNBRG00000017370	lsm1	66	100.000	ENSSPAG00000020548	lsm1	58	100.000	Stegastes_partitus
ENSNBRG00000017370	lsm1	66	92.208	ENSSSCG00000039058	LSM1	58	92.208	Sus_scrofa
ENSNBRG00000017370	lsm1	66	93.506	ENSTGUG00000004793	LSM1	58	93.506	Taeniopygia_guttata
ENSNBRG00000017370	lsm1	66	100.000	ENSTRUG00000025239	lsm1	58	100.000	Takifugu_rubripes
ENSNBRG00000017370	lsm1	66	100.000	ENSTNIG00000004055	lsm1	58	100.000	Tetraodon_nigroviridis
ENSNBRG00000017370	lsm1	53	93.443	ENSTBEG00000015884	LSM1	52	93.443	Tupaia_belangeri
ENSNBRG00000017370	lsm1	66	92.208	ENSTTRG00000004482	LSM1	58	92.208	Tursiops_truncatus
ENSNBRG00000017370	lsm1	66	92.208	ENSUAMG00000004103	LSM1	58	92.208	Ursus_americanus
ENSNBRG00000017370	lsm1	66	92.208	ENSUMAG00000009132	LSM1	58	92.208	Ursus_maritimus
ENSNBRG00000017370	lsm1	66	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSNBRG00000017370	lsm1	66	92.208	ENSVVUG00000020191	LSM1	58	92.208	Vulpes_vulpes
ENSNBRG00000017370	lsm1	66	66.234	ENSVVUG00000014880	-	82	66.234	Vulpes_vulpes
ENSNBRG00000017370	lsm1	66	88.889	ENSXETG00000009004	lsm1	59	88.889	Xenopus_tropicalis
ENSNBRG00000017370	lsm1	66	98.701	ENSXCOG00000015631	lsm1	58	98.701	Xiphophorus_couchianus
ENSNBRG00000017370	lsm1	66	98.701	ENSXMAG00000026637	lsm1	58	98.701	Xiphophorus_maculatus