EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000017606 (Gene tree)
Gene ID: 102786152
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 12084 bases
Position: chrJH422680.1:74899-86982
Accession: 102786152
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000023149	KH_1	PF00013.29	3.2e-06	1	1
ENSNBRP00000023172	zf-CCHC	PF00098.23	0.00041	1	1
ENSNBRP00000023149	zf-CCHC	PF00098.23	0.00042	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000023778	-	1932	XM_006809850	ENSNBRP00000023172	643 (aa)	XP_006809913	-
ENSNBRT00000023751	-	1956	-	ENSNBRP00000023149	651 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000017606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000017606's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000017606	sf1	60	79.562	ENSAMEG00000017828	SF1	58	83.690	Ailuropoda_melanoleuca
ENSNBRG00000017606	sf1	100	95.216	ENSACIG00000016514	sf1	100	95.216	Amphilophus_citrinellus
ENSNBRG00000017606	sf1	86	65.557	ENSANAG00000022607	-	88	75.204	Aotus_nancymaae
ENSNBRG00000017606	sf1	61	79.419	ENSANAG00000026664	-	88	84.282	Aotus_nancymaae
ENSNBRG00000017606	sf1	100	99.380	ENSACLG00000007633	sf1	100	99.380	Astatotilapia_calliptera
ENSNBRG00000017606	sf1	72	83.755	ENSAMXG00000003630	sf1	66	79.150	Astyanax_mexicanus
ENSNBRG00000017606	sf1	84	70.819	ENSBTAG00000001035	SF1	61	83.690	Bos_taurus
ENSNBRG00000017606	sf1	60	79.562	ENSCJAG00000002780	SF1	75	68.493	Callithrix_jacchus
ENSNBRG00000017606	sf1	60	78.729	ENSCAFG00000014239	SF1	58	83.690	Canis_familiaris
ENSNBRG00000017606	sf1	60	79.562	ENSCAFG00020014381	SF1	58	83.690	Canis_lupus_dingo
ENSNBRG00000017606	sf1	60	79.562	ENSCHIG00000025867	SF1	68	83.690	Capra_hircus
ENSNBRG00000017606	sf1	61	73.566	ENSTSYG00000033618	SF1	84	89.825	Carlito_syrichta
ENSNBRG00000017606	sf1	60	80.392	ENSCAPG00000010762	SF1	65	84.824	Cavia_aperea
ENSNBRG00000017606	sf1	60	80.392	ENSCPOG00000012290	SF1	68	84.824	Cavia_porcellus
ENSNBRG00000017606	sf1	79	71.859	ENSCCAG00000023781	-	81	74.255	Cebus_capucinus
ENSNBRG00000017606	sf1	60	81.796	ENSCCAG00000037881	SF1	88	84.282	Cebus_capucinus
ENSNBRG00000017606	sf1	60	79.562	ENSCATG00000011564	SF1	88	84.282	Cercocebus_atys
ENSNBRG00000017606	sf1	60	79.319	ENSCSAG00000007258	SF1	68	83.690	Chlorocebus_sabaeus
ENSNBRG00000017606	sf1	58	74.242	ENSCHOG00000006008	SF1	66	78.531	Choloepus_hoffmanni
ENSNBRG00000017606	sf1	61	56.325	ENSCING00000005564	-	92	53.463	Ciona_intestinalis
ENSNBRG00000017606	sf1	62	57.946	ENSCSAVG00000009055	-	72	62.333	Ciona_savignyi
ENSNBRG00000017606	sf1	60	79.562	ENSCANG00000042201	SF1	88	84.282	Colobus_angolensis_palliatus
ENSNBRG00000017606	sf1	60	79.805	ENSCGRG00001003677	Sf1	65	84.225	Cricetulus_griseus_chok1gshd
ENSNBRG00000017606	sf1	60	79.562	ENSCGRG00000001708	Sf1	67	84.824	Cricetulus_griseus_crigri
ENSNBRG00000017606	sf1	67	94.751	ENSCVAG00000001670	sf1	77	91.304	Cyprinodon_variegatus
ENSNBRG00000017606	sf1	87	80.668	ENSDARG00000008188	sf1	64	89.344	Danio_rerio
ENSNBRG00000017606	sf1	60	78.325	ENSDNOG00000001282	SF1	68	83.690	Dasypus_novemcinctus
ENSNBRG00000017606	sf1	61	78.947	ENSDORG00000016334	Sf1	58	83.690	Dipodomys_ordii
ENSNBRG00000017606	sf1	60	74.257	ENSETEG00000012830	SF1	51	76.776	Echinops_telfairi
ENSNBRG00000017606	sf1	100	48.331	ENSEBUG00000012728	sf1	61	57.576	Eptatretus_burgeri
ENSNBRG00000017606	sf1	60	79.562	ENSEASG00005018272	SF1	68	83.957	Equus_asinus_asinus
ENSNBRG00000017606	sf1	60	79.562	ENSECAG00000024544	SF1	68	83.957	Equus_caballus
ENSNBRG00000017606	sf1	54	79.348	ENSEEUG00000001058	SF1	83	84.802	Erinaceus_europaeus
ENSNBRG00000017606	sf1	98	63.040	ENSELUG00000013225	sf1	60	83.224	Esox_lucius
ENSNBRG00000017606	sf1	60	79.319	ENSFCAG00000012231	SF1	75	68.775	Felis_catus
ENSNBRG00000017606	sf1	60	79.562	ENSFDAG00000009833	SF1	65	84.282	Fukomys_damarensis
ENSNBRG00000017606	sf1	87	69.164	ENSGMOG00000007469	sf1	61	92.793	Gadus_morhua
ENSNBRG00000017606	sf1	89	84.590	ENSGAFG00000019284	sf1	74	88.571	Gambusia_affinis
ENSNBRG00000017606	sf1	63	82.567	ENSGAGG00000021691	SF1	68	70.902	Gopherus_agassizii
ENSNBRG00000017606	sf1	100	93.833	ENSHBUG00000011598	sf1	100	93.833	Haplochromis_burtoni
ENSNBRG00000017606	sf1	60	79.562	ENSHGLG00000009541	SF1	65	83.690	Heterocephalus_glaber_female
ENSNBRG00000017606	sf1	57	72.525	ENSHGLG00100008255	-	70	79.480	Heterocephalus_glaber_male
ENSNBRG00000017606	sf1	60	79.562	ENSHGLG00100013879	-	64	85.345	Heterocephalus_glaber_male
ENSNBRG00000017606	sf1	72	85.504	ENSHCOG00000011388	sf1	68	87.389	Hippocampus_comes
ENSNBRG00000017606	sf1	55	72.118	ENSSTOG00000024353	-	66	74.255	Ictidomys_tridecemlineatus
ENSNBRG00000017606	sf1	60	79.562	ENSSTOG00000009790	-	58	84.282	Ictidomys_tridecemlineatus
ENSNBRG00000017606	sf1	60	79.805	ENSJJAG00000011788	Sf1	58	83.957	Jaculus_jaculus
ENSNBRG00000017606	sf1	68	87.800	ENSKMAG00000005854	sf1	70	87.253	Kryptolebias_marmoratus
ENSNBRG00000017606	sf1	80	86.364	ENSLBEG00000019836	sf1	72	87.174	Labrus_bergylta
ENSNBRG00000017606	sf1	62	77.995	ENSLACG00000018493	SF1	67	79.620	Latimeria_chalumnae
ENSNBRG00000017606	sf1	68	79.526	ENSLOCG00000002130	sf1	72	80.000	Lepisosteus_oculatus
ENSNBRG00000017606	sf1	60	80.488	ENSLAFG00000007201	SF1	63	83.511	Loxodonta_africana
ENSNBRG00000017606	sf1	60	79.562	ENSMFAG00000033122	SF1	88	84.282	Macaca_fascicularis
ENSNBRG00000017606	sf1	61	79.137	ENSMMUG00000022606	SF1	89	84.282	Macaca_mulatta
ENSNBRG00000017606	sf1	60	79.562	ENSMNEG00000037901	SF1	88	84.282	Macaca_nemestrina
ENSNBRG00000017606	sf1	67	73.523	ENSMLEG00000040706	SF1	89	83.957	Mandrillus_leucophaeus
ENSNBRG00000017606	sf1	100	93.979	ENSMZEG00005009196	sf1	100	93.979	Maylandia_zebra
ENSNBRG00000017606	sf1	60	79.562	ENSMAUG00000014064	Sf1	65	84.225	Mesocricetus_auratus
ENSNBRG00000017606	sf1	60	79.562	ENSMICG00000001202	SF1	88	84.054	Microcebus_murinus
ENSNBRG00000017606	sf1	60	79.902	ENSMOCG00000022038	Sf1	65	84.225	Microtus_ochrogaster
ENSNBRG00000017606	sf1	68	90.766	ENSMMOG00000020474	sf1	67	90.826	Mola_mola
ENSNBRG00000017606	sf1	60	78.230	ENSMODG00000029407	SF1	80	84.824	Monodelphis_domestica
ENSNBRG00000017606	sf1	65	93.112	ENSMALG00000020521	sf1	73	93.128	Monopterus_albus
ENSNBRG00000017606	sf1	60	79.805	MGP_CAROLIEiJ_G0022607	Sf1	99	95.489	Mus_caroli
ENSNBRG00000017606	sf1	60	79.805	ENSMUSG00000024949	Sf1	99	95.489	Mus_musculus
ENSNBRG00000017606	sf1	60	79.805	MGP_PahariEiJ_G0014101	Sf1	99	95.489	Mus_pahari
ENSNBRG00000017606	sf1	60	79.805	MGP_SPRETEiJ_G0023518	Sf1	99	95.489	Mus_spretus
ENSNBRG00000017606	sf1	60	79.412	ENSMPUG00000012684	SF1	58	83.690	Mustela_putorius_furo
ENSNBRG00000017606	sf1	64	76.852	ENSMLUG00000029800	-	63	80.270	Myotis_lucifugus
ENSNBRG00000017606	sf1	60	79.562	ENSMLUG00000015217	-	58	83.690	Myotis_lucifugus
ENSNBRG00000017606	sf1	60	79.805	ENSNGAG00000005550	Sf1	65	83.957	Nannospalax_galili
ENSNBRG00000017606	sf1	60	79.805	ENSNLEG00000005236	-	88	84.282	Nomascus_leucogenys
ENSNBRG00000017606	sf1	60	78.261	ENSMEUG00000013424	SF1	69	84.973	Notamacropus_eugenii
ENSNBRG00000017606	sf1	54	79.076	ENSOPRG00000005008	SF1	66	84.802	Ochotona_princeps
ENSNBRG00000017606	sf1	60	77.129	ENSODEG00000006102	-	59	81.016	Octodon_degus
ENSNBRG00000017606	sf1	100	93.833	ENSONIG00000015728	sf1	100	93.833	Oreochromis_niloticus
ENSNBRG00000017606	sf1	51	74.640	ENSOANG00000002909	SF1	76	78.947	Ornithorhynchus_anatinus
ENSNBRG00000017606	sf1	60	78.729	ENSOCUG00000026486	SF1	59	83.690	Oryctolagus_cuniculus
ENSNBRG00000017606	sf1	70	85.991	ENSORLG00000011853	sf1	66	86.947	Oryzias_latipes
ENSNBRG00000017606	sf1	70	86.207	ENSORLG00020011834	sf1	66	87.168	Oryzias_latipes_hni
ENSNBRG00000017606	sf1	60	78.729	ENSOGAG00000016196	SF1	58	83.690	Otolemur_garnettii
ENSNBRG00000017606	sf1	60	79.562	ENSOARG00000009166	SF1	65	83.690	Ovis_aries
ENSNBRG00000017606	sf1	60	80.788	ENSPPAG00000002799	-	91	82.620	Pan_paniscus
ENSNBRG00000017606	sf1	60	79.319	ENSPPRG00000013566	SF1	58	85.393	Panthera_pardus
ENSNBRG00000017606	sf1	60	79.562	ENSPTIG00000016141	SF1	67	83.690	Panthera_tigris_altaica
ENSNBRG00000017606	sf1	60	80.788	ENSPTRG00000003846	SF1	88	84.282	Pan_troglodytes
ENSNBRG00000017606	sf1	60	79.562	ENSPANG00000020754	SF1	88	84.282	Papio_anubis
ENSNBRG00000017606	sf1	53	88.571	ENSPSIG00000003610	SF1	52	84.674	Pelodiscus_sinensis
ENSNBRG00000017606	sf1	60	79.805	ENSPEMG00000010463	Sf1	65	84.225	Peromyscus_maniculatus_bairdii
ENSNBRG00000017606	sf1	61	79.227	ENSPCIG00000018173	SF1	60	83.288	Phascolarctos_cinereus
ENSNBRG00000017606	sf1	97	73.837	ENSPFOG00000013683	sf1	61	94.199	Poecilia_formosa
ENSNBRG00000017606	sf1	60	79.562	ENSPPYG00000003098	-	70	83.690	Pongo_abelii
ENSNBRG00000017606	sf1	61	78.657	ENSPCAG00000013631	SF1	61	77.197	Procavia_capensis
ENSNBRG00000017606	sf1	60	79.562	ENSPCOG00000027546	SF1	88	84.054	Propithecus_coquereli
ENSNBRG00000017606	sf1	61	78.155	ENSPVAG00000016938	SF1	75	69.461	Pteropus_vampyrus
ENSNBRG00000017606	sf1	100	93.979	ENSPNYG00000004673	sf1	100	93.979	Pundamilia_nyererei
ENSNBRG00000017606	sf1	72	79.394	ENSPNAG00000013072	sf1	74	78.340	Pygocentrus_nattereri
ENSNBRG00000017606	sf1	60	79.805	ENSRNOG00000021085	Sf1	60	84.590	Rattus_norvegicus
ENSNBRG00000017606	sf1	60	79.562	ENSRBIG00000042818	SF1	88	84.282	Rhinopithecus_bieti
ENSNBRG00000017606	sf1	61	79.327	ENSRROG00000045655	SF1	89	83.957	Rhinopithecus_roxellana
ENSNBRG00000017606	sf1	62	37.116	YLR116W	MSL5	56	44.565	Saccharomyces_cerevisiae
ENSNBRG00000017606	sf1	82	65.909	ENSSBOG00000022267	-	84	74.344	Saimiri_boliviensis_boliviensis
ENSNBRG00000017606	sf1	73	69.691	ENSSHAG00000006841	SF1	68	85.095	Sarcophilus_harrisii
ENSNBRG00000017606	sf1	72	80.376	ENSSFOG00015021978	sf1	66	81.637	Scleropages_formosus
ENSNBRG00000017606	sf1	83	84.854	ENSSMAG00000007549	sf1	70	87.364	Scophthalmus_maximus
ENSNBRG00000017606	sf1	72	85.516	ENSSDUG00000003903	sf1	70	87.991	Seriola_dumerili
ENSNBRG00000017606	sf1	72	85.119	ENSSLDG00000013075	sf1	68	87.773	Seriola_lalandi_dorsalis
ENSNBRG00000017606	sf1	60	74.696	ENSSARG00000008180	SF1	71	79.133	Sorex_araneus
ENSNBRG00000017606	sf1	61	81.087	ENSSPUG00000012907	SF1	58	87.679	Sphenodon_punctatus
ENSNBRG00000017606	sf1	60	79.562	ENSSSCG00000013021	SF1	68	83.690	Sus_scrofa
ENSNBRG00000017606	sf1	74	69.981	ENSTNIG00000004820	sf1	72	78.329	Tetraodon_nigroviridis
ENSNBRG00000017606	sf1	60	73.333	ENSTBEG00000013133	SF1	62	68.764	Tupaia_belangeri
ENSNBRG00000017606	sf1	60	74.453	ENSTTRG00000008857	SF1	67	79.133	Tursiops_truncatus
ENSNBRG00000017606	sf1	60	82.045	ENSUMAG00000007268	SF1	71	83.690	Ursus_maritimus
ENSNBRG00000017606	sf1	60	79.319	ENSVVUG00000028585	SF1	68	83.690	Vulpes_vulpes
ENSNBRG00000017606	sf1	86	71.354	ENSXETG00000008434	sf1	62	86.351	Xenopus_tropicalis
ENSNBRG00000017606	sf1	55	93.017	ENSXCOG00000003704	sf1	69	94.413	Xiphophorus_couchianus
ENSNBRG00000017606	sf1	97	85.822	ENSXMAG00000007822	sf1	70	89.035	Xiphophorus_maculatus