EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000017960 (Gene tree)
Gene ID: 102790231
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 10870 bases
Position: chrJH422421.1:505862-516731
Accession: 102790231
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000023523	ResIII	PF04851.15	3.8e-26	1	2
ENSNBRP00000023523	ResIII	PF04851.15	3.8e-26	2	2
ENSNBRP00000023523	DEAD	PF00270.29	1.8e-53	1	2
ENSNBRP00000023523	DEAD	PF00270.29	1.8e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000024137	-	5271	XM_006805944	ENSNBRP00000023523	1756 (aa)	XP_006806007	-

Gene Model

Click here to download ENSNBRG00000017960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000017960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000017960	snrnp200	86	54.091	ENSNBRG00000022083	ascc3	72	54.091
ENSNBRG00000017960	snrnp200	76	32.053	ENSNBRG00000002910	hfm1	88	30.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000017960	snrnp200	98	90.319	ENSG00000144028	SNRNP200	92	91.236	Homo_sapiens
ENSNBRG00000017960	snrnp200	98	97.678	ENSAPOG00000010223	snrnp200	90	97.678	Acanthochromis_polyacanthus
ENSNBRG00000017960	snrnp200	98	90.377	ENSAMEG00000008996	SNRNP200	90	90.377	Ailuropoda_melanoleuca
ENSNBRG00000017960	snrnp200	98	98.379	ENSACIG00000001764	snrnp200	91	98.379	Amphilophus_citrinellus
ENSNBRG00000017960	snrnp200	98	97.620	ENSAOCG00000024593	snrnp200	92	96.924	Amphiprion_ocellaris
ENSNBRG00000017960	snrnp200	98	97.040	ENSAPEG00000012554	snrnp200	92	97.040	Amphiprion_percula
ENSNBRG00000017960	snrnp200	98	97.620	ENSATEG00000022522	snrnp200	90	97.620	Anabas_testudineus
ENSNBRG00000017960	snrnp200	98	90.603	ENSAPLG00000004313	SNRNP200	91	90.551	Anas_platyrhynchos
ENSNBRG00000017960	snrnp200	97	89.567	ENSACAG00000000434	SNRNP200	89	89.567	Anolis_carolinensis
ENSNBRG00000017960	snrnp200	98	89.844	ENSANAG00000036625	SNRNP200	93	89.792	Aotus_nancymaae
ENSNBRG00000017960	snrnp200	98	99.768	ENSACLG00000011188	snrnp200	90	99.768	Astatotilapia_calliptera
ENSNBRG00000017960	snrnp200	98	94.309	ENSAMXG00000005684	snrnp200	90	94.254	Astyanax_mexicanus
ENSNBRG00000017960	snrnp200	98	90.029	ENSBTAG00000000848	SNRNP200	90	90.029	Bos_taurus
ENSNBRG00000017960	snrnp200	98	90.261	ENSCJAG00000007514	SNRNP200	90	90.261	Callithrix_jacchus
ENSNBRG00000017960	snrnp200	98	89.376	ENSCAFG00020019979	SNRNP200	99	91.778	Canis_lupus_dingo
ENSNBRG00000017960	snrnp200	98	90.261	ENSCHIG00000020611	SNRNP200	90	90.261	Capra_hircus
ENSNBRG00000017960	snrnp200	98	90.429	ENSTSYG00000010467	SNRNP200	90	90.377	Carlito_syrichta
ENSNBRG00000017960	snrnp200	98	89.936	ENSCAPG00000017234	SNRNP200	91	89.884	Cavia_aperea
ENSNBRG00000017960	snrnp200	98	90.145	ENSCPOG00000006776	SNRNP200	90	90.145	Cavia_porcellus
ENSNBRG00000017960	snrnp200	98	90.261	ENSCCAG00000033962	SNRNP200	90	90.261	Cebus_capucinus
ENSNBRG00000017960	snrnp200	98	90.319	ENSCATG00000015790	SNRNP200	90	90.319	Cercocebus_atys
ENSNBRG00000017960	snrnp200	98	90.203	ENSCLAG00000004116	SNRNP200	90	90.203	Chinchilla_lanigera
ENSNBRG00000017960	snrnp200	98	90.319	ENSCSAG00000017369	SNRNP200	90	90.319	Chlorocebus_sabaeus
ENSNBRG00000017960	snrnp200	76	92.016	ENSCHOG00000012981	-	51	92.016	Choloepus_hoffmanni
ENSNBRG00000017960	snrnp200	98	90.272	ENSCPBG00000022571	SNRNP200	91	90.487	Chrysemys_picta_bellii
ENSNBRG00000017960	snrnp200	98	76.430	ENSCING00000005082	-	90	76.661	Ciona_intestinalis
ENSNBRG00000017960	snrnp200	98	90.313	ENSCANG00000033932	SNRNP200	96	90.261	Colobus_angolensis_palliatus
ENSNBRG00000017960	snrnp200	98	90.261	ENSCGRG00001022610	Snrnp200	90	90.261	Cricetulus_griseus_chok1gshd
ENSNBRG00000017960	snrnp200	98	89.641	ENSCGRG00000016472	Snrnp200	90	89.641	Cricetulus_griseus_crigri
ENSNBRG00000017960	snrnp200	98	95.703	ENSCSEG00000016399	snrnp200	90	95.647	Cynoglossus_semilaevis
ENSNBRG00000017960	snrnp200	98	90.424	ENSCVAG00000017631	snrnp200	90	90.424	Cyprinodon_variegatus
ENSNBRG00000017960	snrnp200	98	94.599	ENSDARG00000077536	snrnp200	90	94.544	Danio_rerio
ENSNBRG00000017960	snrnp200	98	88.696	ENSDNOG00000011227	SNRNP200	90	88.696	Dasypus_novemcinctus
ENSNBRG00000017960	snrnp200	98	90.156	ENSDORG00000005861	Snrnp200	92	90.104	Dipodomys_ordii
ENSNBRG00000017960	snrnp200	98	73.699	FBgn0263599	l(3)72Ab	90	73.815	Drosophila_melanogaster
ENSNBRG00000017960	snrnp200	92	94.712	ENSETEG00000000162	SNRNP200	60	94.712	Echinops_telfairi
ENSNBRG00000017960	snrnp200	89	80.897	ENSEBUG00000016524	snrnp200	95	80.897	Eptatretus_burgeri
ENSNBRG00000017960	snrnp200	99	88.175	ENSEASG00005001884	SNRNP200	91	88.175	Equus_asinus_asinus
ENSNBRG00000017960	snrnp200	98	90.371	ENSECAG00000019675	SNRNP200	90	90.319	Equus_caballus
ENSNBRG00000017960	snrnp200	97	88.993	ENSEEUG00000012178	SNRNP200	89	89.072	Erinaceus_europaeus
ENSNBRG00000017960	snrnp200	98	95.708	ENSELUG00000018948	snrnp200	90	95.708	Esox_lucius
ENSNBRG00000017960	snrnp200	98	90.377	ENSFCAG00000010699	SNRNP200	90	90.377	Felis_catus
ENSNBRG00000017960	snrnp200	95	84.368	ENSFALG00000001368	-	89	84.368	Ficedula_albicollis
ENSNBRG00000017960	snrnp200	98	90.145	ENSFDAG00000004683	SNRNP200	90	90.145	Fukomys_damarensis
ENSNBRG00000017960	snrnp200	98	93.674	ENSFHEG00000003786	snrnp200	90	93.674	Fundulus_heteroclitus
ENSNBRG00000017960	snrnp200	98	94.896	ENSGMOG00000004881	snrnp200	90	94.896	Gadus_morhua
ENSNBRG00000017960	snrnp200	98	93.790	ENSGAFG00000010807	snrnp200	90	93.790	Gambusia_affinis
ENSNBRG00000017960	snrnp200	98	96.984	ENSGACG00000011474	snrnp200	90	96.984	Gasterosteus_aculeatus
ENSNBRG00000017960	snrnp200	99	93.594	ENSGAGG00000016069	SNRNP200	99	89.235	Gopherus_agassizii
ENSNBRG00000017960	snrnp200	98	90.319	ENSGGOG00000005174	SNRNP200	97	91.964	Gorilla_gorilla
ENSNBRG00000017960	snrnp200	99	96.889	ENSHBUG00000011322	snrnp200	92	96.889	Haplochromis_burtoni
ENSNBRG00000017960	snrnp200	98	90.203	ENSHGLG00000006654	SNRNP200	90	90.203	Heterocephalus_glaber_female
ENSNBRG00000017960	snrnp200	98	90.203	ENSHGLG00100018594	SNRNP200	90	90.203	Heterocephalus_glaber_male
ENSNBRG00000017960	snrnp200	98	90.319	ENSSTOG00000016351	SNRNP200	90	90.319	Ictidomys_tridecemlineatus
ENSNBRG00000017960	snrnp200	98	90.261	ENSJJAG00000023659	Snrnp200	90	90.261	Jaculus_jaculus
ENSNBRG00000017960	snrnp200	98	93.468	ENSKMAG00000003665	snrnp200	90	93.468	Kryptolebias_marmoratus
ENSNBRG00000017960	snrnp200	98	97.330	ENSLBEG00000021585	snrnp200	90	97.330	Labrus_bergylta
ENSNBRG00000017960	snrnp200	87	92.459	ENSLACG00000000226	SNRNP200	99	92.459	Latimeria_chalumnae
ENSNBRG00000017960	snrnp200	98	93.913	ENSLOCG00000015198	snrnp200	90	93.913	Lepisosteus_oculatus
ENSNBRG00000017960	snrnp200	98	89.971	ENSLAFG00000015626	SNRNP200	90	89.971	Loxodonta_africana
ENSNBRG00000017960	snrnp200	98	90.261	ENSMFAG00000040174	SNRNP200	99	91.570	Macaca_fascicularis
ENSNBRG00000017960	snrnp200	98	90.261	ENSMMUG00000023261	SNRNP200	90	90.261	Macaca_mulatta
ENSNBRG00000017960	snrnp200	98	90.203	ENSMNEG00000032398	SNRNP200	90	90.203	Macaca_nemestrina
ENSNBRG00000017960	snrnp200	98	90.319	ENSMLEG00000019083	SNRNP200	99	91.570	Mandrillus_leucophaeus
ENSNBRG00000017960	snrnp200	98	97.216	ENSMAMG00000007851	snrnp200	90	97.216	Mastacembelus_armatus
ENSNBRG00000017960	snrnp200	99	96.889	ENSMZEG00005010787	snrnp200	92	96.889	Maylandia_zebra
ENSNBRG00000017960	snrnp200	98	90.313	ENSMGAG00000001831	SNRNP200	93	90.261	Meleagris_gallopavo
ENSNBRG00000017960	snrnp200	98	90.319	ENSMAUG00000011825	Snrnp200	90	90.319	Mesocricetus_auratus
ENSNBRG00000017960	snrnp200	98	90.429	ENSMICG00000004710	SNRNP200	98	91.268	Microcebus_murinus
ENSNBRG00000017960	snrnp200	95	90.326	ENSMOCG00000011814	Snrnp200	90	90.326	Microtus_ochrogaster
ENSNBRG00000017960	snrnp200	98	94.544	ENSMMOG00000014167	snrnp200	90	94.544	Mola_mola
ENSNBRG00000017960	snrnp200	98	90.371	ENSMODG00000008475	SNRNP200	90	90.319	Monodelphis_domestica
ENSNBRG00000017960	snrnp200	98	97.272	ENSMALG00000001973	snrnp200	90	97.272	Monopterus_albus
ENSNBRG00000017960	snrnp200	98	90.255	MGP_CAROLIEiJ_G0024250	Snrnp200	90	90.203	Mus_caroli
ENSNBRG00000017960	snrnp200	98	90.261	ENSMUSG00000003660	Snrnp200	90	90.261	Mus_musculus
ENSNBRG00000017960	snrnp200	98	90.261	MGP_PahariEiJ_G0025695	Snrnp200	90	90.261	Mus_pahari
ENSNBRG00000017960	snrnp200	98	90.261	MGP_SPRETEiJ_G0025170	Snrnp200	88	94.483	Mus_spretus
ENSNBRG00000017960	snrnp200	98	90.319	ENSMPUG00000008949	SNRNP200	90	90.319	Mustela_putorius_furo
ENSNBRG00000017960	snrnp200	98	87.398	ENSMLUG00000027511	-	90	87.398	Myotis_lucifugus
ENSNBRG00000017960	snrnp200	98	89.861	ENSMLUG00000010493	SNRNP200	90	89.861	Myotis_lucifugus
ENSNBRG00000017960	snrnp200	98	90.319	ENSNGAG00000021993	Snrnp200	90	90.319	Nannospalax_galili
ENSNBRG00000017960	snrnp200	98	85.000	ENSNLEG00000000025	SNRNP200	90	85.057	Nomascus_leucogenys
ENSNBRG00000017960	snrnp200	96	90.240	ENSMEUG00000010532	SNRNP200	64	90.350	Notamacropus_eugenii
ENSNBRG00000017960	snrnp200	98	89.211	ENSOPRG00000015464	SNRNP200	90	89.159	Ochotona_princeps
ENSNBRG00000017960	snrnp200	98	90.145	ENSODEG00000008366	SNRNP200	90	90.252	Octodon_degus
ENSNBRG00000017960	snrnp200	98	99.536	ENSONIG00000010714	snrnp200	90	99.536	Oreochromis_niloticus
ENSNBRG00000017960	snrnp200	98	90.261	ENSOCUG00000009864	SNRNP200	90	90.261	Oryctolagus_cuniculus
ENSNBRG00000017960	snrnp200	98	96.161	ENSORLG00000012286	snrnp200	94	96.161	Oryzias_latipes
ENSNBRG00000017960	snrnp200	98	96.221	ENSORLG00020004648	snrnp200	90	96.221	Oryzias_latipes_hni
ENSNBRG00000017960	snrnp200	98	96.335	ENSORLG00015019114	snrnp200	99	96.335	Oryzias_latipes_hsok
ENSNBRG00000017960	snrnp200	98	96.570	ENSOMEG00000011834	snrnp200	90	96.570	Oryzias_melastigma
ENSNBRG00000017960	snrnp200	98	90.429	ENSOGAG00000006879	SNRNP200	90	90.377	Otolemur_garnettii
ENSNBRG00000017960	snrnp200	98	89.919	ENSOARG00000013949	SNRNP200	90	89.919	Ovis_aries
ENSNBRG00000017960	snrnp200	98	90.319	ENSPPAG00000041559	SNRNP200	90	90.319	Pan_paniscus
ENSNBRG00000017960	snrnp200	98	90.377	ENSPPRG00000004435	SNRNP200	90	90.377	Panthera_pardus
ENSNBRG00000017960	snrnp200	98	89.855	ENSPTIG00000006380	SNRNP200	90	89.855	Panthera_tigris_altaica
ENSNBRG00000017960	snrnp200	98	90.319	ENSPTRG00000012230	SNRNP200	91	91.740	Pan_troglodytes
ENSNBRG00000017960	snrnp200	98	90.319	ENSPANG00000006017	SNRNP200	90	90.319	Papio_anubis
ENSNBRG00000017960	snrnp200	98	95.012	ENSPKIG00000014762	snrnp200	94	95.012	Paramormyrops_kingsleyae
ENSNBRG00000017960	snrnp200	98	89.327	ENSPSIG00000008580	SNRNP200	90	89.275	Pelodiscus_sinensis
ENSNBRG00000017960	snrnp200	98	90.261	ENSPCIG00000023050	SNRNP200	90	90.261	Phascolarctos_cinereus
ENSNBRG00000017960	snrnp200	98	96.752	ENSPFOG00000015110	snrnp200	90	96.752	Poecilia_formosa
ENSNBRG00000017960	snrnp200	97	96.776	ENSPLAG00000006711	snrnp200	91	96.776	Poecilia_latipinna
ENSNBRG00000017960	snrnp200	97	96.716	ENSPMEG00000021166	snrnp200	91	96.716	Poecilia_mexicana
ENSNBRG00000017960	snrnp200	98	96.808	ENSPREG00000008875	snrnp200	90	96.808	Poecilia_reticulata
ENSNBRG00000017960	snrnp200	98	90.319	ENSPPYG00000012068	SNRNP200	90	90.319	Pongo_abelii
ENSNBRG00000017960	snrnp200	96	94.872	ENSPCAG00000008536	SNRNP200	80	94.872	Procavia_capensis
ENSNBRG00000017960	snrnp200	98	90.371	ENSPCOG00000024608	SNRNP200	90	90.319	Propithecus_coquereli
ENSNBRG00000017960	snrnp200	93	90.909	ENSPVAG00000005860	SNRNP200	82	90.789	Pteropus_vampyrus
ENSNBRG00000017960	snrnp200	98	93.696	ENSPNYG00000017476	snrnp200	90	93.696	Pundamilia_nyererei
ENSNBRG00000017960	snrnp200	98	89.269	ENSPNAG00000010998	snrnp200	90	89.269	Pygocentrus_nattereri
ENSNBRG00000017960	snrnp200	98	90.319	ENSRNOG00000012157	Snrnp200	90	90.319	Rattus_norvegicus
ENSNBRG00000017960	snrnp200	98	90.319	ENSRBIG00000044690	-	90	92.082	Rhinopithecus_bieti
ENSNBRG00000017960	snrnp200	98	90.319	ENSRROG00000037952	-	90	90.319	Rhinopithecus_roxellana
ENSNBRG00000017960	snrnp200	98	90.261	ENSSBOG00000035471	SNRNP200	97	91.740	Saimiri_boliviensis_boliviensis
ENSNBRG00000017960	snrnp200	98	90.313	ENSSHAG00000000758	SNRNP200	93	90.261	Sarcophilus_harrisii
ENSNBRG00000017960	snrnp200	98	95.012	ENSSFOG00015018826	snrnp200	90	95.012	Scleropages_formosus
ENSNBRG00000017960	snrnp200	98	97.388	ENSSMAG00000005463	snrnp200	92	97.333	Scophthalmus_maximus
ENSNBRG00000017960	snrnp200	98	97.737	ENSSDUG00000021410	snrnp200	90	97.737	Seriola_dumerili
ENSNBRG00000017960	snrnp200	98	97.795	ENSSLDG00000010884	snrnp200	90	97.795	Seriola_lalandi_dorsalis
ENSNBRG00000017960	snrnp200	93	87.174	ENSSARG00000010728	SNRNP200	85	87.114	Sorex_araneus
ENSNBRG00000017960	snrnp200	98	90.493	ENSSPUG00000003726	-	90	90.493	Sphenodon_punctatus
ENSNBRG00000017960	snrnp200	98	97.913	ENSSPAG00000001842	snrnp200	91	97.913	Stegastes_partitus
ENSNBRG00000017960	snrnp200	98	90.388	ENSSSCG00000008127	SNRNP200	92	90.388	Sus_scrofa
ENSNBRG00000017960	snrnp200	96	80.992	ENSTGUG00000014475	-	89	80.923	Taeniopygia_guttata
ENSNBRG00000017960	snrnp200	98	96.167	ENSTRUG00000001307	snrnp200	90	96.111	Takifugu_rubripes
ENSNBRG00000017960	snrnp200	98	94.449	ENSTNIG00000004320	snrnp200	91	84.366	Tetraodon_nigroviridis
ENSNBRG00000017960	snrnp200	98	90.487	ENSTTRG00000004983	SNRNP200	90	90.435	Tursiops_truncatus
ENSNBRG00000017960	snrnp200	80	86.754	ENSUAMG00000008395	-	79	86.754	Ursus_americanus
ENSNBRG00000017960	snrnp200	98	90.377	ENSUMAG00000012385	SNRNP200	90	90.377	Ursus_maritimus
ENSNBRG00000017960	snrnp200	98	90.435	ENSVVUG00000026247	SNRNP200	91	90.435	Vulpes_vulpes
ENSNBRG00000017960	snrnp200	98	90.255	ENSXETG00000001243	snrnp200	90	90.255	Xenopus_tropicalis
ENSNBRG00000017960	snrnp200	98	96.922	ENSXMAG00000002058	snrnp200	90	96.922	Xiphophorus_maculatus