EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000017998 (Gene tree)
Gene ID: 102799338
Gene Symbol: SMARCA2
Alias: wu:fa56c07|wu:fi27f11|zgc:66238
Full Name: probable global transcription activator SNF2L2-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 59352 bases
Position: chrJH422325.1:4108838-4168189
Accession: 102799338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000023572	ResIII	PF04851.15	4.9e-09	1	1
ENSNBRP00000023599	ResIII	PF04851.15	1.7e-07	1	1
ENSNBRP00000023572	BRK	PF07533.16	3.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000024213	SMARCA2-202	642	-	ENSNBRP00000023599	213 (aa)	-	-
ENSNBRT00000024186	SMARCA2-201	4056	XM_006797773	ENSNBRP00000023572	1351 (aa)	XP_006797836	-

Gene Model

Click here to download ENSNBRG00000017998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000017998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000017998	SMARCA2	93	42.233	ENSNBRG00000024242	hells	51	43.333
ENSNBRG00000017998	SMARCA2	94	80.100	ENSNBRG00000018865	-	95	63.757
ENSNBRG00000017998	SMARCA2	79	41.758	ENSNBRG00000012749	smarcad1a	54	37.395
ENSNBRG00000017998	SMARCA2	94	79.602	ENSNBRG00000011457	smarca4a	88	66.691

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000017998	SMARCA2	94	83.085	ENSG00000080503	SMARCA2	93	98.000	Homo_sapiens
ENSNBRG00000017998	SMARCA2	94	88.869	ENSAPOG00000002641	SMARCA2	94	81.977	Acanthochromis_polyacanthus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSAMEG00000012325	SMARCA2	99	70.634	Ailuropoda_melanoleuca
ENSNBRG00000017998	SMARCA2	94	99.364	ENSACIG00000015607	SMARCA2	95	78.742	Amphilophus_citrinellus
ENSNBRG00000017998	SMARCA2	94	88.889	ENSAOCG00000009647	-	95	79.445	Amphiprion_ocellaris
ENSNBRG00000017998	SMARCA2	94	88.869	ENSAPEG00000007646	SMARCA2	94	81.571	Amphiprion_percula
ENSNBRG00000017998	SMARCA2	92	88.571	ENSATEG00000006916	SMARCA2	93	77.979	Anabas_testudineus
ENSNBRG00000017998	SMARCA2	94	81.463	ENSAPLG00000013873	SMARCA2	95	66.437	Anas_platyrhynchos
ENSNBRG00000017998	SMARCA2	94	82.090	ENSACAG00000002423	SMARCA2	87	71.263	Anolis_carolinensis
ENSNBRG00000017998	SMARCA2	94	83.085	ENSANAG00000026498	SMARCA2	93	70.522	Aotus_nancymaae
ENSNBRG00000017998	SMARCA2	94	89.608	ENSACLG00000004248	SMARCA2	95	80.413	Astatotilapia_calliptera
ENSNBRG00000017998	SMARCA2	94	81.592	ENSAMXG00000012404	smarca2	87	77.217	Astyanax_mexicanus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSBTAG00000007494	SMARCA2	95	68.414	Bos_taurus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCJAG00000010710	SMARCA2	93	71.258	Callithrix_jacchus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCAFG00000002013	SMARCA2	95	68.679	Canis_familiaris
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCAFG00020026802	SMARCA2	90	77.219	Canis_lupus_dingo
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCHIG00000025863	SMARCA2	95	68.480	Capra_hircus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSTSYG00000003858	SMARCA2	95	66.558	Carlito_syrichta
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCAPG00000002890	SMARCA2	94	68.132	Cavia_aperea
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCPOG00000005475	SMARCA2	95	67.968	Cavia_porcellus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCCAG00000030636	SMARCA2	93	70.619	Cebus_capucinus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCATG00000031470	SMARCA2	94	69.762	Cercocebus_atys
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCLAG00000014484	SMARCA2	95	67.787	Chinchilla_lanigera
ENSNBRG00000017998	SMARCA2	94	82.587	ENSCSAG00000008650	SMARCA2	95	70.331	Chlorocebus_sabaeus
ENSNBRG00000017998	SMARCA2	94	73.632	ENSCHOG00000004316	SMARCA2	77	70.058	Choloepus_hoffmanni
ENSNBRG00000017998	SMARCA2	89	90.110	ENSCPBG00000025463	SMARCA2	92	73.597	Chrysemys_picta_bellii
ENSNBRG00000017998	SMARCA2	94	83.085	ENSCANG00000039597	SMARCA2	93	71.070	Colobus_angolensis_palliatus
ENSNBRG00000017998	SMARCA2	92	85.354	ENSCGRG00001002323	Smarca2	95	62.303	Cricetulus_griseus_chok1gshd
ENSNBRG00000017998	SMARCA2	95	86.111	ENSCSEG00000019311	SMARCA2	93	74.690	Cynoglossus_semilaevis
ENSNBRG00000017998	SMARCA2	94	83.582	ENSCVAG00000016571	SMARCA2	92	81.349	Cyprinodon_variegatus
ENSNBRG00000017998	SMARCA2	94	81.592	ENSDARG00000008904	smarca2	95	73.329	Danio_rerio
ENSNBRG00000017998	SMARCA2	94	83.085	ENSDNOG00000006402	SMARCA2	95	68.179	Dasypus_novemcinctus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSDORG00000014832	Smarca2	95	67.808	Dipodomys_ordii
ENSNBRG00000017998	SMARCA2	94	70.647	FBgn0000212	brm	79	51.753	Drosophila_melanogaster
ENSNBRG00000017998	SMARCA2	94	77.114	ENSEBUG00000011442	-	87	63.922	Eptatretus_burgeri
ENSNBRG00000017998	SMARCA2	89	81.579	ENSEBUG00000002449	-	85	58.961	Eptatretus_burgeri
ENSNBRG00000017998	SMARCA2	94	83.085	ENSEASG00005010312	SMARCA2	95	68.414	Equus_asinus_asinus
ENSNBRG00000017998	SMARCA2	94	81.592	ENSEEUG00000015540	-	60	92.000	Erinaceus_europaeus
ENSNBRG00000017998	SMARCA2	94	82.587	ENSELUG00000010318	smarca2	88	78.919	Esox_lucius
ENSNBRG00000017998	SMARCA2	94	83.085	ENSFCAG00000001568	SMARCA2	95	68.613	Felis_catus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSFALG00000010416	SMARCA2	100	69.179	Ficedula_albicollis
ENSNBRG00000017998	SMARCA2	94	83.085	ENSFDAG00000010502	SMARCA2	93	66.467	Fukomys_damarensis
ENSNBRG00000017998	SMARCA2	94	87.015	ENSFHEG00000021250	SMARCA2	89	86.280	Fundulus_heteroclitus
ENSNBRG00000017998	SMARCA2	94	82.090	ENSGMOG00000014229	SMARCA2	88	74.711	Gadus_morhua
ENSNBRG00000017998	SMARCA2	89	91.209	ENSGALG00000010164	SMARCA2	96	68.655	Gallus_gallus
ENSNBRG00000017998	SMARCA2	94	82.090	ENSGAFG00000001164	SMARCA2	87	79.606	Gambusia_affinis
ENSNBRG00000017998	SMARCA2	94	83.582	ENSGACG00000014488	SMARCA2	94	75.218	Gasterosteus_aculeatus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSGAGG00000024412	SMARCA2	95	68.588	Gopherus_agassizii
ENSNBRG00000017998	SMARCA2	94	83.085	ENSGGOG00000000513	SMARCA2	95	65.826	Gorilla_gorilla
ENSNBRG00000017998	SMARCA2	93	100.000	ENSHBUG00000006691	SMARCA2	95	81.506	Haplochromis_burtoni
ENSNBRG00000017998	SMARCA2	94	83.085	ENSHGLG00000005215	SMARCA2	94	66.667	Heterocephalus_glaber_female
ENSNBRG00000017998	SMARCA2	94	83.085	ENSHGLG00100010496	SMARCA2	95	67.971	Heterocephalus_glaber_male
ENSNBRG00000017998	SMARCA2	94	83.582	ENSHCOG00000015348	-	94	73.455	Hippocampus_comes
ENSNBRG00000017998	SMARCA2	94	80.961	ENSIPUG00000011060	smarca2	90	80.563	Ictalurus_punctatus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSSTOG00000006812	SMARCA2	95	68.029	Ictidomys_tridecemlineatus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSJJAG00000010867	Smarca2	95	68.077	Jaculus_jaculus
ENSNBRG00000017998	SMARCA2	94	87.838	ENSKMAG00000015844	-	95	77.814	Kryptolebias_marmoratus
ENSNBRG00000017998	SMARCA2	51	62.339	ENSLACG00000000270	SMARCA2	91	62.339	Latimeria_chalumnae
ENSNBRG00000017998	SMARCA2	94	83.085	ENSLOCG00000011499	smarca2	94	70.297	Lepisosteus_oculatus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSLAFG00000014061	SMARCA2	95	67.103	Loxodonta_africana
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMFAG00000003814	SMARCA2	95	69.465	Macaca_fascicularis
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMMUG00000015279	SMARCA2	95	67.895	Macaca_mulatta
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMNEG00000041069	SMARCA2	94	70.392	Macaca_nemestrina
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMLEG00000027418	SMARCA2	94	70.439	Mandrillus_leucophaeus
ENSNBRG00000017998	SMARCA2	94	86.637	ENSMAMG00000003056	SMARCA2	94	80.942	Mastacembelus_armatus
ENSNBRG00000017998	SMARCA2	93	100.000	ENSMZEG00005020709	SMARCA2	95	81.308	Maylandia_zebra
ENSNBRG00000017998	SMARCA2	83	58.791	ENSMGAG00000005160	-	94	54.690	Meleagris_gallopavo
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMICG00000005162	SMARCA2	95	70.395	Microcebus_murinus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMOCG00000001611	Smarca2	95	68.074	Microtus_ochrogaster
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMMOG00000014196	SMARCA2	94	78.076	Mola_mola
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMODG00000003578	SMARCA2	95	68.787	Monodelphis_domestica
ENSNBRG00000017998	SMARCA2	94	83.582	ENSMALG00000009611	SMARCA2	91	78.231	Monopterus_albus
ENSNBRG00000017998	SMARCA2	94	83.085	MGP_CAROLIEiJ_G0022841	Smarca2	96	66.516	Mus_caroli
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMUSG00000024921	Smarca2	93	98.000	Mus_musculus
ENSNBRG00000017998	SMARCA2	94	83.085	MGP_PahariEiJ_G0014334	Smarca2	95	67.630	Mus_pahari
ENSNBRG00000017998	SMARCA2	94	83.085	MGP_SPRETEiJ_G0023759	Smarca2	97	66.667	Mus_spretus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMPUG00000005171	SMARCA2	85	75.261	Mustela_putorius_furo
ENSNBRG00000017998	SMARCA2	94	83.085	ENSMLUG00000002342	SMARCA2	94	63.792	Myotis_lucifugus
ENSNBRG00000017998	SMARCA2	94	82.500	ENSNGAG00000000108	Smarca2	94	66.865	Nannospalax_galili
ENSNBRG00000017998	SMARCA2	94	83.085	ENSNLEG00000008575	SMARCA2	93	69.917	Nomascus_leucogenys
ENSNBRG00000017998	SMARCA2	91	78.788	ENSMEUG00000009812	SMARCA2	87	65.829	Notamacropus_eugenii
ENSNBRG00000017998	SMARCA2	89	73.158	ENSOPRG00000013474	SMARCA2	95	63.415	Ochotona_princeps
ENSNBRG00000017998	SMARCA2	94	83.085	ENSODEG00000005452	SMARCA2	93	67.245	Octodon_degus
ENSNBRG00000017998	SMARCA2	94	84.577	ENSONIG00000014163	SMARCA2	95	80.435	Oreochromis_niloticus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSOANG00000008299	-	96	74.967	Ornithorhynchus_anatinus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSOCUG00000006320	SMARCA2	95	67.852	Oryctolagus_cuniculus
ENSNBRG00000017998	SMARCA2	94	85.455	ENSORLG00000020820	SMARCA2	94	80.260	Oryzias_latipes
ENSNBRG00000017998	SMARCA2	94	85.623	ENSORLG00015006289	SMARCA2	93	79.770	Oryzias_latipes_hsok
ENSNBRG00000017998	SMARCA2	94	84.080	ENSOMEG00000009736	-	95	74.650	Oryzias_melastigma
ENSNBRG00000017998	SMARCA2	94	83.085	ENSOGAG00000017053	SMARCA2	94	66.689	Otolemur_garnettii
ENSNBRG00000017998	SMARCA2	94	83.085	ENSOARG00000013265	SMARCA2	95	67.836	Ovis_aries
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPPAG00000038717	SMARCA2	93	69.350	Pan_paniscus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPPRG00000001879	SMARCA2	95	68.679	Panthera_pardus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPTRG00000051168	SMARCA2	93	71.131	Pan_troglodytes
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPANG00000025121	SMARCA2	95	65.125	Papio_anubis
ENSNBRG00000017998	SMARCA2	94	82.587	ENSPKIG00000018469	-	95	70.811	Paramormyrops_kingsleyae
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPSIG00000006284	SMARCA2	95	68.254	Pelodiscus_sinensis
ENSNBRG00000017998	SMARCA2	94	81.592	ENSPMGG00000013696	-	93	75.035	Periophthalmus_magnuspinnatus
ENSNBRG00000017998	SMARCA2	85	86.188	ENSPEMG00000019821	Smarca2	95	67.062	Peromyscus_maniculatus_bairdii
ENSNBRG00000017998	SMARCA2	89	86.653	ENSPMAG00000005337	-	82	68.829	Petromyzon_marinus
ENSNBRG00000017998	SMARCA2	94	78.607	ENSPMAG00000001030	-	100	74.543	Petromyzon_marinus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPCIG00000015658	SMARCA2	95	68.655	Phascolarctos_cinereus
ENSNBRG00000017998	SMARCA2	94	82.587	ENSPFOG00000001856	SMARCA2	95	77.024	Poecilia_formosa
ENSNBRG00000017998	SMARCA2	94	82.587	ENSPLAG00000017829	SMARCA2	93	74.458	Poecilia_latipinna
ENSNBRG00000017998	SMARCA2	94	82.587	ENSPMEG00000001815	-	95	76.471	Poecilia_mexicana
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPREG00000013800	SMARCA2	95	78.290	Poecilia_reticulata
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPPYG00000019258	SMARCA2	87	71.326	Pongo_abelii
ENSNBRG00000017998	SMARCA2	70	92.661	ENSPCAG00000016969	SMARCA2	60	92.661	Procavia_capensis
ENSNBRG00000017998	SMARCA2	94	83.085	ENSPCOG00000025709	SMARCA2	95	68.676	Propithecus_coquereli
ENSNBRG00000017998	SMARCA2	90	92.222	ENSPVAG00000000901	SMARCA2	94	73.672	Pteropus_vampyrus
ENSNBRG00000017998	SMARCA2	95	97.674	ENSPNYG00000004533	SMARCA2	88	97.368	Pundamilia_nyererei
ENSNBRG00000017998	SMARCA2	94	81.592	ENSPNAG00000014635	smarca2	93	73.913	Pygocentrus_nattereri
ENSNBRG00000017998	SMARCA2	94	83.085	ENSRNOG00000011931	Smarca2	95	66.905	Rattus_norvegicus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSRBIG00000038618	SMARCA2	95	71.160	Rhinopithecus_bieti
ENSNBRG00000017998	SMARCA2	94	83.085	ENSRROG00000019271	SMARCA2	94	71.174	Rhinopithecus_roxellana
ENSNBRG00000017998	SMARCA2	94	83.085	ENSSBOG00000034827	SMARCA2	95	67.306	Saimiri_boliviensis_boliviensis
ENSNBRG00000017998	SMARCA2	94	83.085	ENSSHAG00000007884	SMARCA2	95	68.833	Sarcophilus_harrisii
ENSNBRG00000017998	SMARCA2	94	83.085	ENSSFOG00015014870	SMARCA2	92	76.048	Scleropages_formosus
ENSNBRG00000017998	SMARCA2	92	93.333	ENSSMAG00000013707	SMARCA2	95	77.160	Scophthalmus_maximus
ENSNBRG00000017998	SMARCA2	93	95.556	ENSSDUG00000008852	-	95	76.933	Seriola_dumerili
ENSNBRG00000017998	SMARCA2	94	84.080	ENSSLDG00000025449	SMARCA2	93	75.603	Seriola_lalandi_dorsalis
ENSNBRG00000017998	SMARCA2	94	83.085	ENSSARG00000007888	SMARCA2	74	94.521	Sorex_araneus
ENSNBRG00000017998	SMARCA2	94	82.587	ENSSPUG00000001629	SMARCA2	98	66.888	Sphenodon_punctatus
ENSNBRG00000017998	SMARCA2	94	89.426	ENSSPAG00000020091	-	95	79.643	Stegastes_partitus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSSSCG00000005232	SMARCA2	95	68.348	Sus_scrofa
ENSNBRG00000017998	SMARCA2	94	83.085	ENSTGUG00000005460	SMARCA2	95	68.588	Taeniopygia_guttata
ENSNBRG00000017998	SMARCA2	93	93.333	ENSTRUG00000015619	SMARCA2	94	76.097	Takifugu_rubripes
ENSNBRG00000017998	SMARCA2	94	83.085	ENSTBEG00000008767	SMARCA2	64	97.619	Tupaia_belangeri
ENSNBRG00000017998	SMARCA2	94	83.085	ENSTTRG00000002033	SMARCA2	87	70.774	Tursiops_truncatus
ENSNBRG00000017998	SMARCA2	94	83.085	ENSUAMG00000024701	SMARCA2	95	70.781	Ursus_americanus
ENSNBRG00000017998	SMARCA2	94	65.174	ENSVPAG00000001204	SMARCA2	86	70.223	Vicugna_pacos
ENSNBRG00000017998	SMARCA2	94	83.085	ENSVVUG00000004598	SMARCA2	92	76.944	Vulpes_vulpes
ENSNBRG00000017998	SMARCA2	94	90.506	ENSXETG00000015299	smarca2	95	66.737	Xenopus_tropicalis
ENSNBRG00000017998	SMARCA2	94	82.587	ENSXCOG00000011073	SMARCA2	94	79.909	Xiphophorus_couchianus
ENSNBRG00000017998	SMARCA2	94	82.587	ENSXMAG00000015611	SMARCA2	99	76.324	Xiphophorus_maculatus