EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000018002 (Gene tree)
Gene ID: -
Gene Symbol: zgc:110796
Alias: cb676|msi1
Full Name: zgc:110796
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 2043 bases
Position: chrJH422279.1:9051342-9053384
Accession: ZDB-GENE-050306-36
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000023503	RRM_1	PF00076.22	1.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000024117	-	577	-	ENSNBRP00000023503	94 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000018002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000018002's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000018002	zgc:110796	83	44.872	ENSNBRG00000011082	HNRNPA1P48	63	44.872
ENSNBRG00000018002	zgc:110796	96	50.000	ENSNBRG00000011408	hnrnpaba	55	50.000
ENSNBRG00000018002	zgc:110796	98	66.304	ENSNBRG00000014596	msi2a	80	66.304
ENSNBRG00000018002	zgc:110796	74	37.143	ENSNBRG00000022844	-	68	37.143
ENSNBRG00000018002	zgc:110796	76	38.028	ENSNBRG00000014522	-	62	38.028
ENSNBRG00000018002	zgc:110796	97	47.253	ENSNBRG00000014795	-	50	47.253
ENSNBRG00000018002	zgc:110796	76	36.620	ENSNBRG00000014469	-	66	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000018002	zgc:110796	98	97.826	ENSAPOG00000003191	MSI1	50	78.000	Acanthochromis_polyacanthus
ENSNBRG00000018002	zgc:110796	100	84.043	ENSACIG00000018210	zgc:110796	100	84.043	Amphilophus_citrinellus
ENSNBRG00000018002	zgc:110796	74	97.143	ENSACIG00000017754	-	54	97.143	Amphilophus_citrinellus
ENSNBRG00000018002	zgc:110796	97	100.000	ENSACLG00000011230	MSI1	77	100.000	Astatotilapia_calliptera
ENSNBRG00000018002	zgc:110796	98	76.087	ENSCSAG00000002265	MSI1	55	76.087	Chlorocebus_sabaeus
ENSNBRG00000018002	zgc:110796	97	96.703	ENSCVAG00000017430	zgc:110796	66	96.703	Cyprinodon_variegatus
ENSNBRG00000018002	zgc:110796	100	91.489	ENSDARG00000041299	zgc:110796	100	91.489	Danio_rerio
ENSNBRG00000018002	zgc:110796	98	85.870	ENSGACG00000012679	MSI1	50	85.870	Gasterosteus_aculeatus
ENSNBRG00000018002	zgc:110796	98	69.792	ENSHCOG00000012067	-	73	71.053	Hippocampus_comes
ENSNBRG00000018002	zgc:110796	98	86.957	ENSKMAG00000011251	MSI1	53	87.912	Kryptolebias_marmoratus
ENSNBRG00000018002	zgc:110796	97	87.912	ENSLOCG00000008618	zgc:110796	57	87.912	Lepisosteus_oculatus
ENSNBRG00000018002	zgc:110796	74	84.286	ENSMAUG00000016820	Msi1	58	84.286	Mesocricetus_auratus
ENSNBRG00000018002	zgc:110796	73	82.609	ENSPSIG00000016295	-	56	82.609	Pelodiscus_sinensis
ENSNBRG00000018002	zgc:110796	100	73.958	ENSPREG00000020265	zgc:110796	81	73.958	Poecilia_reticulata
ENSNBRG00000018002	zgc:110796	98	67.647	ENSSPAG00000015573	zgc:110796	72	67.647	Stegastes_partitus
ENSNBRG00000018002	zgc:110796	100	87.234	ENSTRUG00000021586	-	94	87.234	Takifugu_rubripes
ENSNBRG00000018002	zgc:110796	74	84.286	ENSUAMG00000015514	MSI1	54	84.286	Ursus_americanus