EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000018441 (Gene tree)
Gene ID: 102789855
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 5149 bases
Position: chrJH422281.1:11796842-11801990
Accession: 102789855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000024096	RRM_1	PF00076.22	3.9e-36	1	2
ENSNBRP00000024096	RRM_1	PF00076.22	3.9e-36	2	2
ENSNBRP00000024090	RRM_1	PF00076.22	4e-36	1	2
ENSNBRP00000024090	RRM_1	PF00076.22	4e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000024726	-	1206	XM_006785672	ENSNBRP00000024096	332 (aa)	XP_006785735	UPI0003EC204C
ENSNBRT00000024720	-	4082	-	ENSNBRP00000024090	333 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000018441's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000018441's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000018441	-	74	34.694	ENSNBRG00000014596	msi2a	79	42.857
ENSNBRG00000018441	-	80	34.815	ENSNBRG00000019548	hnrnpd	57	39.785
ENSNBRG00000018441	-	55	38.824	ENSNBRG00000014795	-	61	36.150
ENSNBRG00000018441	-	58	39.896	ENSNBRG00000000841	-	56	40.541
ENSNBRG00000018441	-	59	57.592	ENSNBRG00000014469	-	82	60.227
ENSNBRG00000018441	-	55	37.059	ENSNBRG00000011408	hnrnpaba	59	36.782
ENSNBRG00000018441	-	68	87.097	ENSNBRG00000011082	HNRNPA1P48	96	65.328
ENSNBRG00000018441	-	54	56.742	ENSNBRG00000014522	-	88	52.358
ENSNBRG00000018441	-	79	32.982	ENSNBRG00000004605	dazap1	51	39.130

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000018441	-	91	89.404	ENSAPOG00000019369	-	90	89.404	Acanthochromis_polyacanthus
ENSNBRG00000018441	-	54	56.180	ENSACIG00000021815	-	87	56.180	Amphilophus_citrinellus
ENSNBRG00000018441	-	68	94.273	ENSAOCG00000005289	-	90	84.158	Amphiprion_ocellaris
ENSNBRG00000018441	-	68	94.273	ENSAPEG00000004179	-	90	84.158	Amphiprion_percula
ENSNBRG00000018441	-	91	86.039	ENSATEG00000022918	hnrnpa1a	88	96.257	Anabas_testudineus
ENSNBRG00000018441	-	53	59.748	ENSATEG00000003423	-	75	59.748	Anabas_testudineus
ENSNBRG00000018441	-	55	56.593	ENSACAG00000017109	-	71	50.215	Anolis_carolinensis
ENSNBRG00000018441	-	100	98.806	ENSACLG00000006940	-	100	98.806	Astatotilapia_calliptera
ENSNBRG00000018441	-	55	63.277	ENSAMXG00000037730	-	63	58.796	Astyanax_mexicanus
ENSNBRG00000018441	-	67	88.546	ENSCSEG00000007589	hnrnpa1a	84	82.819	Cynoglossus_semilaevis
ENSNBRG00000018441	-	54	55.814	ENSCSEG00000014051	-	73	54.237	Cynoglossus_semilaevis
ENSNBRG00000018441	-	91	85.668	ENSCVAG00000012637	hnrnpa1a	90	85.668	Cyprinodon_variegatus
ENSNBRG00000018441	-	58	81.250	ENSDARG00000011020	hnrnpa1a	60	60.573	Danio_rerio
ENSNBRG00000018441	-	62	56.281	ENSDORG00000026425	-	79	44.891	Dipodomys_ordii
ENSNBRG00000018441	-	59	87.755	ENSELUG00000007372	-	51	90.164	Esox_lucius
ENSNBRG00000018441	-	55	61.667	ENSGMOG00000020353	-	94	62.011	Gadus_morhua
ENSNBRG00000018441	-	54	53.933	ENSGAFG00000016803	-	64	50.935	Gambusia_affinis
ENSNBRG00000018441	-	91	86.645	ENSGAFG00000007751	-	90	86.319	Gambusia_affinis
ENSNBRG00000018441	-	64	89.944	ENSGACG00000009435	-	60	89.560	Gasterosteus_aculeatus
ENSNBRG00000018441	-	100	99.399	ENSHBUG00000005647	hnrnpa1a	100	99.399	Haplochromis_burtoni
ENSNBRG00000018441	-	56	85.561	ENSIPUG00000022440	-	72	85.030	Ictalurus_punctatus
ENSNBRG00000018441	-	55	62.921	ENSIPUG00000001991	-	77	62.921	Ictalurus_punctatus
ENSNBRG00000018441	-	56	86.286	ENSIPUG00000002023	hnrnpa1a	76	86.286	Ictalurus_punctatus
ENSNBRG00000018441	-	55	66.851	ENSJJAG00000009178	-	60	41.000	Jaculus_jaculus
ENSNBRG00000018441	-	100	83.481	ENSKMAG00000020859	-	89	89.769	Kryptolebias_marmoratus
ENSNBRG00000018441	-	91	80.757	ENSLBEG00000010010	hnrnpa1a	65	91.228	Labrus_bergylta
ENSNBRG00000018441	-	64	72.432	ENSMFAG00000028351	-	63	67.593	Macaca_fascicularis
ENSNBRG00000018441	-	68	94.273	ENSMAMG00000007606	-	66	92.511	Mastacembelus_armatus
ENSNBRG00000018441	-	100	99.102	ENSMZEG00005027173	hnrnpa1a	100	99.102	Maylandia_zebra
ENSNBRG00000018441	-	83	75.362	ENSMMOG00000008251	hnrnpa1a	93	85.398	Mola_mola
ENSNBRG00000018441	-	53	56.497	ENSMALG00000008886	-	86	56.497	Monopterus_albus
ENSNBRG00000018441	-	68	94.273	ENSMALG00000014091	hnrnpa1a	65	92.511	Monopterus_albus
ENSNBRG00000018441	-	91	90.099	ENSORLG00000008001	-	68	94.248	Oryzias_latipes
ENSNBRG00000018441	-	54	51.977	ENSORLG00000029240	-	89	52.874	Oryzias_latipes
ENSNBRG00000018441	-	54	51.977	ENSORLG00020022498	-	80	52.874	Oryzias_latipes_hni
ENSNBRG00000018441	-	91	90.099	ENSORLG00020006582	hnrnpa1a	98	93.333	Oryzias_latipes_hni
ENSNBRG00000018441	-	53	51.724	ENSORLG00020006043	-	59	51.724	Oryzias_latipes_hni
ENSNBRG00000018441	-	91	90.429	ENSORLG00015022294	-	97	84.746	Oryzias_latipes_hsok
ENSNBRG00000018441	-	100	89.286	ENSOMEG00000015959	-	68	93.805	Oryzias_melastigma
ENSNBRG00000018441	-	56	94.595	ENSPMGG00000011804	hnrnpa1a	80	84.305	Periophthalmus_magnuspinnatus
ENSNBRG00000018441	-	59	56.452	ENSPMGG00000016392	-	93	58.101	Periophthalmus_magnuspinnatus
ENSNBRG00000018441	-	91	87.013	ENSPFOG00000001825	-	90	87.013	Poecilia_formosa
ENSNBRG00000018441	-	91	87.013	ENSPMEG00000002425	-	90	87.013	Poecilia_mexicana
ENSNBRG00000018441	-	59	57.592	ENSPNYG00000020729	-	90	60.227	Pundamilia_nyererei
ENSNBRG00000018441	-	56	86.631	ENSPNAG00000021630	-	56	86.413	Pygocentrus_nattereri
ENSNBRG00000018441	-	56	86.842	ENSPNAG00000007752	hnrnpa1a	86	77.523	Pygocentrus_nattereri
ENSNBRG00000018441	-	54	59.639	ENSSMAG00000010279	-	93	59.639	Scophthalmus_maximus
ENSNBRG00000018441	-	53	55.682	ENSSMAG00000010246	-	79	55.367	Scophthalmus_maximus
ENSNBRG00000018441	-	64	89.252	ENSSMAG00000004641	hnrnpa1a	97	74.706	Scophthalmus_maximus
ENSNBRG00000018441	-	89	97.872	ENSSDUG00000013908	hnrnpa1a	92	88.288	Seriola_dumerili
ENSNBRG00000018441	-	54	60.116	ENSSDUG00000002431	-	82	60.116	Seriola_dumerili
ENSNBRG00000018441	-	89	97.826	ENSSLDG00000003718	hnrnpa1a	94	87.879	Seriola_lalandi_dorsalis
ENSNBRG00000018441	-	92	88.065	ENSSPAG00000018518	-	69	89.868	Stegastes_partitus
ENSNBRG00000018441	-	69	88.210	ENSTRUG00000020491	-	70	88.210	Takifugu_rubripes
ENSNBRG00000018441	-	58	61.538	ENSTNIG00000007398	-	84	56.364	Tetraodon_nigroviridis
ENSNBRG00000018441	-	82	76.557	ENSXCOG00000009001	-	95	91.111	Xiphophorus_couchianus
ENSNBRG00000018441	-	69	95.175	ENSXMAG00000008076	-	65	95.575	Xiphophorus_maculatus