EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000018742 (Gene tree)
Gene ID: 102787536
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: DNA-directed RNA polymerases I and III subunit RPAC1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 5296 bases
Position: chrJH422493.1:141803-147098
Accession: 102787536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000024518	RNA_pol_A_bac	PF01000.26	4.6e-31	1	1
ENSNBRP00000024532	RNA_pol_A_bac	PF01000.26	5.5e-27	1	1
ENSNBRP00000024532	RNA_pol_L	PF01193.24	1.3e-22	1	1
ENSNBRP00000024518	RNA_pol_L	PF01193.24	2.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000025178	-	891	-	ENSNBRP00000024532	296 (aa)	-	-
ENSNBRT00000025164	-	1363	XM_006808304	ENSNBRP00000024518	351 (aa)	XP_006808367	UPI0003EC27EF

Gene Model

Click here to download ENSNBRG00000018742's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000018742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000018742	polr1c	100	73.064	ENSG00000171453	POLR1C	100	74.194	Homo_sapiens
ENSNBRG00000018742	polr1c	100	89.744	ENSAPOG00000024356	polr1c	100	89.744	Acanthochromis_polyacanthus
ENSNBRG00000018742	polr1c	99	72.779	ENSAMEG00000012205	POLR1C	99	72.206	Ailuropoda_melanoleuca
ENSNBRG00000018742	polr1c	94	81.571	ENSACIG00000016268	polr1c	91	81.571	Amphilophus_citrinellus
ENSNBRG00000018742	polr1c	100	89.174	ENSAOCG00000011687	polr1c	97	89.174	Amphiprion_ocellaris
ENSNBRG00000018742	polr1c	100	90.028	ENSAPEG00000002433	polr1c	100	90.028	Amphiprion_percula
ENSNBRG00000018742	polr1c	99	91.667	ENSATEG00000005985	polr1c	99	91.667	Anabas_testudineus
ENSNBRG00000018742	polr1c	87	72.697	ENSAPLG00000002908	POLR1C	100	72.039	Anas_platyrhynchos
ENSNBRG00000018742	polr1c	89	71.885	ENSACAG00000009764	POLR1C	87	72.258	Anolis_carolinensis
ENSNBRG00000018742	polr1c	100	73.401	ENSANAG00000025805	POLR1C	100	73.401	Aotus_nancymaae
ENSNBRG00000018742	polr1c	100	98.575	ENSACLG00000006573	polr1c	100	98.575	Astatotilapia_calliptera
ENSNBRG00000018742	polr1c	57	31.373	ENSACLG00000004854	polr2c	80	30.392	Astatotilapia_calliptera
ENSNBRG00000018742	polr1c	100	82.828	ENSAMXG00000012062	polr1c	100	82.828	Astyanax_mexicanus
ENSNBRG00000018742	polr1c	99	73.352	ENSBTAG00000018969	POLR1C	99	73.066	Bos_taurus
ENSNBRG00000018742	polr1c	93	45.723	WBGene00019275	rpac-40	93	45.294	Caenorhabditis_elegans
ENSNBRG00000018742	polr1c	99	72.203	ENSCJAG00000005594	POLR1C	99	72.203	Callithrix_jacchus
ENSNBRG00000018742	polr1c	99	72.206	ENSCAFG00000001872	POLR1C	99	71.633	Canis_familiaris
ENSNBRG00000018742	polr1c	99	72.206	ENSCAFG00020012018	POLR1C	99	71.633	Canis_lupus_dingo
ENSNBRG00000018742	polr1c	60	30.415	ENSCAFG00020007660	POLR2C	50	30.220	Canis_lupus_dingo
ENSNBRG00000018742	polr1c	99	73.352	ENSCHIG00000004352	POLR1C	99	72.779	Capra_hircus
ENSNBRG00000018742	polr1c	99	72.881	ENSTSYG00000011921	POLR1C	99	72.881	Carlito_syrichta
ENSNBRG00000018742	polr1c	86	73.597	ENSCAPG00000015364	POLR1C	88	72.937	Cavia_aperea
ENSNBRG00000018742	polr1c	100	73.789	ENSCPOG00000038098	POLR1C	100	73.219	Cavia_porcellus
ENSNBRG00000018742	polr1c	99	72.542	ENSCCAG00000020169	POLR1C	99	72.542	Cebus_capucinus
ENSNBRG00000018742	polr1c	100	73.064	ENSCATG00000044045	POLR1C	100	73.064	Cercocebus_atys
ENSNBRG00000018742	polr1c	100	73.789	ENSCLAG00000009266	POLR1C	100	73.219	Chinchilla_lanigera
ENSNBRG00000018742	polr1c	100	72.080	ENSCSAG00000011913	POLR1C	100	71.795	Chlorocebus_sabaeus
ENSNBRG00000018742	polr1c	60	69.340	ENSCHOG00000006601	POLR1C	100	69.340	Choloepus_hoffmanni
ENSNBRG00000018742	polr1c	99	75.645	ENSCPBG00000025203	POLR1C	99	75.072	Chrysemys_picta_bellii
ENSNBRG00000018742	polr1c	98	53.757	ENSCING00000003563	-	98	53.757	Ciona_intestinalis
ENSNBRG00000018742	polr1c	100	73.401	ENSCANG00000043167	POLR1C	100	73.401	Colobus_angolensis_palliatus
ENSNBRG00000018742	polr1c	99	71.920	ENSCGRG00001017533	Polr1c	99	71.347	Cricetulus_griseus_chok1gshd
ENSNBRG00000018742	polr1c	86	72.607	ENSCGRG00000013225	Polr1c	100	71.947	Cricetulus_griseus_crigri
ENSNBRG00000018742	polr1c	100	86.325	ENSCSEG00000018097	polr1c	100	85.470	Cynoglossus_semilaevis
ENSNBRG00000018742	polr1c	60	91.981	ENSCVAG00000005684	polr1c	85	91.981	Cyprinodon_variegatus
ENSNBRG00000018742	polr1c	100	81.481	ENSDARG00000039400	polr1c	96	80.912	Danio_rerio
ENSNBRG00000018742	polr1c	100	73.219	ENSDNOG00000042693	POLR1C	100	72.650	Dasypus_novemcinctus
ENSNBRG00000018742	polr1c	99	73.066	ENSDORG00000000429	Polr1c	99	72.493	Dipodomys_ordii
ENSNBRG00000018742	polr1c	90	51.735	FBgn0031657	CG3756	93	51.104	Drosophila_melanogaster
ENSNBRG00000018742	polr1c	99	68.195	ENSETEG00000010807	POLR1C	99	67.908	Echinops_telfairi
ENSNBRG00000018742	polr1c	98	67.826	ENSEBUG00000013725	polr1c	98	67.246	Eptatretus_burgeri
ENSNBRG00000018742	polr1c	99	72.206	ENSEASG00005003338	POLR1C	99	71.633	Equus_asinus_asinus
ENSNBRG00000018742	polr1c	99	72.881	ENSECAG00000023516	POLR1C	99	72.881	Equus_caballus
ENSNBRG00000018742	polr1c	99	73.926	ENSEEUG00000005471	POLR1C	99	73.352	Erinaceus_europaeus
ENSNBRG00000018742	polr1c	100	83.838	ENSELUG00000013027	polr1c	100	83.838	Esox_lucius
ENSNBRG00000018742	polr1c	99	73.559	ENSFCAG00000009735	POLR1C	99	73.559	Felis_catus
ENSNBRG00000018742	polr1c	93	72.783	ENSFALG00000012111	POLR1C	100	72.171	Ficedula_albicollis
ENSNBRG00000018742	polr1c	99	72.779	ENSFDAG00000008428	POLR1C	99	72.206	Fukomys_damarensis
ENSNBRG00000018742	polr1c	100	89.527	ENSFHEG00000000262	polr1c	100	89.527	Fundulus_heteroclitus
ENSNBRG00000018742	polr1c	56	84.884	ENSFHEG00000013867	-	84	87.209	Fundulus_heteroclitus
ENSNBRG00000018742	polr1c	93	83.232	ENSGMOG00000013878	polr1c	100	82.317	Gadus_morhua
ENSNBRG00000018742	polr1c	99	73.066	ENSGALG00000010349	POLR1C	99	72.493	Gallus_gallus
ENSNBRG00000018742	polr1c	100	89.174	ENSGAFG00000010153	polr1c	100	89.174	Gambusia_affinis
ENSNBRG00000018742	polr1c	100	85.755	ENSGACG00000002453	polr1c	100	85.755	Gasterosteus_aculeatus
ENSNBRG00000018742	polr1c	98	75.362	ENSGAGG00000010640	POLR1C	99	74.783	Gopherus_agassizii
ENSNBRG00000018742	polr1c	100	73.064	ENSGGOG00000010903	POLR1C	100	73.064	Gorilla_gorilla
ENSNBRG00000018742	polr1c	57	31.373	ENSHBUG00000023040	polr2c	80	30.392	Haplochromis_burtoni
ENSNBRG00000018742	polr1c	100	88.319	ENSHBUG00000017816	polr1c	100	87.464	Haplochromis_burtoni
ENSNBRG00000018742	polr1c	99	72.493	ENSHGLG00000019441	POLR1C	99	71.920	Heterocephalus_glaber_female
ENSNBRG00000018742	polr1c	99	72.779	ENSHGLG00100005970	POLR1C	99	72.206	Heterocephalus_glaber_male
ENSNBRG00000018742	polr1c	99	83.815	ENSHCOG00000002179	polr1c	99	83.815	Hippocampus_comes
ENSNBRG00000018742	polr1c	99	82.421	ENSIPUG00000024464	polr1c	99	81.844	Ictalurus_punctatus
ENSNBRG00000018742	polr1c	99	73.066	ENSSTOG00000010631	POLR1C	99	72.493	Ictidomys_tridecemlineatus
ENSNBRG00000018742	polr1c	99	72.493	ENSJJAG00000023110	Polr1c	99	71.920	Jaculus_jaculus
ENSNBRG00000018742	polr1c	100	88.034	ENSKMAG00000014305	polr1c	100	87.838	Kryptolebias_marmoratus
ENSNBRG00000018742	polr1c	100	90.313	ENSLBEG00000014925	polr1c	100	90.313	Labrus_bergylta
ENSNBRG00000018742	polr1c	95	59.403	ENSLACG00000012567	POLR1C	98	58.806	Latimeria_chalumnae
ENSNBRG00000018742	polr1c	99	80.172	ENSLOCG00000016710	polr1c	95	79.598	Lepisosteus_oculatus
ENSNBRG00000018742	polr1c	87	73.770	ENSLAFG00000026248	POLR1C	100	73.115	Loxodonta_africana
ENSNBRG00000018742	polr1c	60	30.415	ENSLAFG00000027230	POLR2C	74	30.415	Loxodonta_africana
ENSNBRG00000018742	polr1c	100	72.727	ENSMFAG00000046295	POLR1C	100	72.727	Macaca_fascicularis
ENSNBRG00000018742	polr1c	100	72.727	ENSMMUG00000015192	POLR1C	100	72.727	Macaca_mulatta
ENSNBRG00000018742	polr1c	100	72.727	ENSMNEG00000028073	POLR1C	100	72.727	Macaca_nemestrina
ENSNBRG00000018742	polr1c	100	72.727	ENSMLEG00000034818	POLR1C	100	72.727	Mandrillus_leucophaeus
ENSNBRG00000018742	polr1c	100	90.598	ENSMAMG00000008700	polr1c	100	90.598	Mastacembelus_armatus
ENSNBRG00000018742	polr1c	100	98.291	ENSMZEG00005018545	polr1c	100	98.291	Maylandia_zebra
ENSNBRG00000018742	polr1c	84	69.831	ENSMGAG00000011020	POLR1C	100	69.153	Meleagris_gallopavo
ENSNBRG00000018742	polr1c	99	71.920	ENSMAUG00000014329	Polr1c	99	71.347	Mesocricetus_auratus
ENSNBRG00000018742	polr1c	99	71.864	ENSMICG00000005027	POLR1C	99	71.864	Microcebus_murinus
ENSNBRG00000018742	polr1c	60	30.698	ENSMOCG00000013652	Polr2c	73	30.698	Microtus_ochrogaster
ENSNBRG00000018742	polr1c	99	72.493	ENSMOCG00000017549	Polr1c	99	71.920	Microtus_ochrogaster
ENSNBRG00000018742	polr1c	100	85.135	ENSMMOG00000005380	polr1c	100	85.135	Mola_mola
ENSNBRG00000018742	polr1c	84	74.237	ENSMODG00000018964	POLR1C	100	73.898	Monodelphis_domestica
ENSNBRG00000018742	polr1c	100	90.236	ENSMALG00000011711	polr1c	100	90.236	Monopterus_albus
ENSNBRG00000018742	polr1c	99	63.897	MGP_CAROLIEiJ_G0021662	Polr1c	100	70.833	Mus_caroli
ENSNBRG00000018742	polr1c	99	72.493	ENSMUSG00000067148	Polr1c	98	73.267	Mus_musculus
ENSNBRG00000018742	polr1c	99	72.779	MGP_PahariEiJ_G0020654	Polr1c	98	74.257	Mus_pahari
ENSNBRG00000018742	polr1c	99	72.493	MGP_SPRETEiJ_G0022574	Polr1c	98	73.267	Mus_spretus
ENSNBRG00000018742	polr1c	99	72.206	ENSMPUG00000012916	POLR1C	91	71.633	Mustela_putorius_furo
ENSNBRG00000018742	polr1c	99	72.493	ENSMLUG00000017751	POLR1C	99	71.920	Myotis_lucifugus
ENSNBRG00000018742	polr1c	99	73.066	ENSNGAG00000023487	Polr1c	100	72.881	Nannospalax_galili
ENSNBRG00000018742	polr1c	100	72.650	ENSNLEG00000004035	POLR1C	100	72.080	Nomascus_leucogenys
ENSNBRG00000018742	polr1c	100	63.401	ENSMEUG00000006778	POLR1C	100	63.401	Notamacropus_eugenii
ENSNBRG00000018742	polr1c	80	68.776	ENSOPRG00000000145	POLR1C	99	70.849	Ochotona_princeps
ENSNBRG00000018742	polr1c	100	73.504	ENSODEG00000015831	-	100	72.934	Octodon_degus
ENSNBRG00000018742	polr1c	62	69.406	ENSODEG00000017109	-	97	69.811	Octodon_degus
ENSNBRG00000018742	polr1c	100	98.575	ENSONIG00000013133	polr1c	98	98.575	Oreochromis_niloticus
ENSNBRG00000018742	polr1c	99	70.774	ENSOANG00000003043	POLR1C	99	70.201	Ornithorhynchus_anatinus
ENSNBRG00000018742	polr1c	99	71.633	ENSOCUG00000005504	POLR1C	99	71.060	Oryctolagus_cuniculus
ENSNBRG00000018742	polr1c	99	84.483	ENSORLG00000019743	polr1c	99	84.483	Oryzias_latipes
ENSNBRG00000018742	polr1c	99	85.345	ENSORLG00020006489	POLR1C	99	85.345	Oryzias_latipes_hni
ENSNBRG00000018742	polr1c	76	69.259	ENSORLG00020005555	polr1c	81	68.750	Oryzias_latipes_hni
ENSNBRG00000018742	polr1c	99	84.770	ENSORLG00015013322	polr1c	99	84.770	Oryzias_latipes_hsok
ENSNBRG00000018742	polr1c	98	86.377	ENSOMEG00000016527	polr1c	98	86.377	Oryzias_melastigma
ENSNBRG00000018742	polr1c	99	73.066	ENSOGAG00000016318	POLR1C	99	72.206	Otolemur_garnettii
ENSNBRG00000018742	polr1c	99	73.066	ENSOARG00000007503	POLR1C	99	72.779	Ovis_aries
ENSNBRG00000018742	polr1c	100	73.064	ENSPPAG00000043678	POLR1C	100	73.064	Pan_paniscus
ENSNBRG00000018742	polr1c	99	73.559	ENSPPRG00000009760	POLR1C	99	73.559	Panthera_pardus
ENSNBRG00000018742	polr1c	99	73.559	ENSPTIG00000014813	POLR1C	99	73.559	Panthera_tigris_altaica
ENSNBRG00000018742	polr1c	100	73.064	ENSPTRG00000018202	POLR1C	100	73.064	Pan_troglodytes
ENSNBRG00000018742	polr1c	100	73.064	ENSPANG00000009025	POLR1C	100	73.064	Papio_anubis
ENSNBRG00000018742	polr1c	100	82.155	ENSPKIG00000009858	polr1c	100	82.155	Paramormyrops_kingsleyae
ENSNBRG00000018742	polr1c	99	74.785	ENSPSIG00000012580	POLR1C	94	74.212	Pelodiscus_sinensis
ENSNBRG00000018742	polr1c	100	87.879	ENSPMGG00000012121	polr1c	100	87.879	Periophthalmus_magnuspinnatus
ENSNBRG00000018742	polr1c	59	30.516	ENSPMGG00000021249	polr2c	81	30.556	Periophthalmus_magnuspinnatus
ENSNBRG00000018742	polr1c	99	71.633	ENSPEMG00000006970	Polr1c	99	71.060	Peromyscus_maniculatus_bairdii
ENSNBRG00000018742	polr1c	99	71.143	ENSPMAG00000005560	polr1c	99	70.857	Petromyzon_marinus
ENSNBRG00000018742	polr1c	60	32.719	ENSPMAG00000004827	polr2c	88	31.797	Petromyzon_marinus
ENSNBRG00000018742	polr1c	100	75.421	ENSPCIG00000028137	POLR1C	100	75.421	Phascolarctos_cinereus
ENSNBRG00000018742	polr1c	100	89.744	ENSPFOG00000014342	POLR1C	100	89.744	Poecilia_formosa
ENSNBRG00000018742	polr1c	100	89.744	ENSPFOG00000014357	polr1c	98	89.744	Poecilia_formosa
ENSNBRG00000018742	polr1c	60	91.038	ENSPLAG00000004111	polr1c	99	83.511	Poecilia_latipinna
ENSNBRG00000018742	polr1c	100	89.744	ENSPMEG00000008420	polr1c	100	89.744	Poecilia_mexicana
ENSNBRG00000018742	polr1c	100	89.744	ENSPMEG00000011877	-	100	89.744	Poecilia_mexicana
ENSNBRG00000018742	polr1c	100	88.319	ENSPREG00000007985	polr1c	100	88.034	Poecilia_reticulata
ENSNBRG00000018742	polr1c	100	72.365	ENSPPYG00000016645	POLR1C	100	71.795	Pongo_abelii
ENSNBRG00000018742	polr1c	99	71.864	ENSPCOG00000024628	POLR1C	99	71.864	Propithecus_coquereli
ENSNBRG00000018742	polr1c	99	66.762	ENSPVAG00000005689	POLR1C	99	66.762	Pteropus_vampyrus
ENSNBRG00000018742	polr1c	100	98.291	ENSPNYG00000003620	polr1c	100	98.291	Pundamilia_nyererei
ENSNBRG00000018742	polr1c	100	84.615	ENSPNAG00000008443	polr1c	100	84.046	Pygocentrus_nattereri
ENSNBRG00000018742	polr1c	99	72.206	ENSRNOG00000019079	Polr1c	99	71.633	Rattus_norvegicus
ENSNBRG00000018742	polr1c	100	73.401	ENSRBIG00000007155	POLR1C	100	73.401	Rhinopithecus_bieti
ENSNBRG00000018742	polr1c	100	73.401	ENSRROG00000000257	POLR1C	100	73.401	Rhinopithecus_roxellana
ENSNBRG00000018742	polr1c	92	48.758	YPR110C	RPC40	95	49.068	Saccharomyces_cerevisiae
ENSNBRG00000018742	polr1c	99	72.542	ENSSBOG00000025735	POLR1C	99	72.542	Saimiri_boliviensis_boliviensis
ENSNBRG00000018742	polr1c	100	66.667	ENSSHAG00000014456	POLR1C	100	66.382	Sarcophilus_harrisii
ENSNBRG00000018742	polr1c	100	83.191	ENSSFOG00015019860	polr1c	100	82.621	Scleropages_formosus
ENSNBRG00000018742	polr1c	100	89.459	ENSSMAG00000018865	polr1c	100	88.319	Scophthalmus_maximus
ENSNBRG00000018742	polr1c	100	92.230	ENSSDUG00000015745	polr1c	100	92.230	Seriola_dumerili
ENSNBRG00000018742	polr1c	100	92.230	ENSSLDG00000018285	polr1c	100	92.230	Seriola_lalandi_dorsalis
ENSNBRG00000018742	polr1c	98	72.464	ENSSPUG00000011822	POLR1C	99	71.884	Sphenodon_punctatus
ENSNBRG00000018742	polr1c	100	90.028	ENSSPAG00000022369	polr1c	100	90.028	Stegastes_partitus
ENSNBRG00000018742	polr1c	99	72.493	ENSSSCG00000028007	POLR1C	98	71.920	Sus_scrofa
ENSNBRG00000018742	polr1c	96	73.512	ENSTGUG00000009159	POLR1C	99	72.917	Taeniopygia_guttata
ENSNBRG00000018742	polr1c	100	85.755	ENSTRUG00000006264	polr1c	100	85.755	Takifugu_rubripes
ENSNBRG00000018742	polr1c	51	71.348	ENSTBEG00000002254	POLR1C	100	71.348	Tupaia_belangeri
ENSNBRG00000018742	polr1c	76	70.412	ENSTTRG00000006344	POLR1C	76	69.663	Tursiops_truncatus
ENSNBRG00000018742	polr1c	99	72.779	ENSUAMG00000025602	POLR1C	99	72.206	Ursus_americanus
ENSNBRG00000018742	polr1c	99	72.779	ENSUMAG00000005938	POLR1C	99	72.206	Ursus_maritimus
ENSNBRG00000018742	polr1c	99	72.881	ENSVVUG00000028922	POLR1C	99	72.881	Vulpes_vulpes
ENSNBRG00000018742	polr1c	98	68.588	ENSXETG00000010882	polr1c	99	67.341	Xenopus_tropicalis
ENSNBRG00000018742	polr1c	100	88.319	ENSXCOG00000014185	polr1c	100	87.464	Xiphophorus_couchianus
ENSNBRG00000018742	polr1c	100	89.174	ENSXMAG00000015076	polr1c	100	89.174	Xiphophorus_maculatus