EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000019658 (Gene tree)
Gene ID: 102786639
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold-inducible RNA-binding protein A-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 2943 bases
Position: chrJH422283.1:5637986-5640928
Accession: 102786639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000025707	RRM_1	PF00076.22	1.3e-25	1	1
ENSNBRP00000025719	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000026392	-	716	XM_006786623	ENSNBRP00000025719	183 (aa)	XP_006786686	UPI00022AF498
ENSNBRT00000026380	-	763	XM_006786621	ENSNBRP00000025707	180 (aa)	XP_006786684	UPI00032A13A5

Gene Model

Click here to download ENSNBRG00000019658's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000019658's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000019658	cirbpa	50	38.889	ENSNBRG00000006218	-	68	38.889
ENSNBRG00000019658	cirbpa	62	43.902	ENSNBRG00000014469	-	75	43.902

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000019658	cirbpa	73	92.481	ENSAPOG00000004458	cirbpa	100	72.396	Acanthochromis_polyacanthus
ENSNBRG00000019658	cirbpa	99	91.061	ENSACIG00000016116	cirbpa	100	87.978	Amphilophus_citrinellus
ENSNBRG00000019658	cirbpa	100	70.588	ENSAOCG00000016212	cirbpa	100	68.063	Amphiprion_ocellaris
ENSNBRG00000019658	cirbpa	100	70.811	ENSAPEG00000011989	cirbpa	100	68.783	Amphiprion_percula
ENSNBRG00000019658	cirbpa	100	87.912	ENSATEG00000014985	cirbpa	100	88.108	Anabas_testudineus
ENSNBRG00000019658	cirbpa	100	100.000	ENSACLG00000002094	-	100	100.000	Astatotilapia_calliptera
ENSNBRG00000019658	cirbpa	100	56.796	ENSAMXG00000015612	cirbpb	82	58.730	Astyanax_mexicanus
ENSNBRG00000019658	cirbpa	100	64.975	ENSCSEG00000014344	cirbpa	100	62.944	Cynoglossus_semilaevis
ENSNBRG00000019658	cirbpa	100	81.818	ENSCVAG00000004853	cirbpa	100	81.818	Cyprinodon_variegatus
ENSNBRG00000019658	cirbpa	100	57.447	ENSDARG00000103672	cirbpa	100	56.915	Danio_rerio
ENSNBRG00000019658	cirbpa	100	76.630	ENSFHEG00000002580	cirbpa	100	80.645	Fundulus_heteroclitus
ENSNBRG00000019658	cirbpa	100	77.005	ENSGAFG00000008654	cirbpa	100	82.888	Gambusia_affinis
ENSNBRG00000019658	cirbpa	100	62.694	ENSGACG00000015206	cirbpa	100	59.694	Gasterosteus_aculeatus
ENSNBRG00000019658	cirbpa	100	100.000	ENSHBUG00000022060	cirbpa	100	100.000	Haplochromis_burtoni
ENSNBRG00000019658	cirbpa	100	79.121	ENSKMAG00000005905	cirbpa	100	77.049	Kryptolebias_marmoratus
ENSNBRG00000019658	cirbpa	100	65.027	ENSLBEG00000000292	cirbpa	100	62.842	Labrus_bergylta
ENSNBRG00000019658	cirbpa	65	75.424	ENSLBEG00000027731	-	66	83.951	Labrus_bergylta
ENSNBRG00000019658	cirbpa	100	82.609	ENSMAMG00000010168	cirbpa	100	85.326	Mastacembelus_armatus
ENSNBRG00000019658	cirbpa	100	100.000	ENSMZEG00005025577	-	100	100.000	Maylandia_zebra
ENSNBRG00000019658	cirbpa	100	86.740	ENSMALG00000020092	cirbpa	100	89.130	Monopterus_albus
ENSNBRG00000019658	cirbpa	99	96.089	ENSONIG00000010169	cirbpa	98	96.089	Oreochromis_niloticus
ENSNBRG00000019658	cirbpa	100	82.703	ENSORLG00000015433	cirbpa	98	81.461	Oryzias_latipes
ENSNBRG00000019658	cirbpa	100	82.703	ENSORLG00020016909	cirbpa	98	81.461	Oryzias_latipes_hni
ENSNBRG00000019658	cirbpa	100	82.703	ENSORLG00015016636	cirbpa	100	79.459	Oryzias_latipes_hsok
ENSNBRG00000019658	cirbpa	100	82.320	ENSOMEG00000021469	cirbpa	73	80.435	Oryzias_melastigma
ENSNBRG00000019658	cirbpa	100	62.304	ENSPKIG00000010561	cirbpa	100	63.874	Paramormyrops_kingsleyae
ENSNBRG00000019658	cirbpa	99	73.656	ENSPMGG00000017342	cirbpa	95	73.262	Periophthalmus_magnuspinnatus
ENSNBRG00000019658	cirbpa	100	80.952	ENSPFOG00000015653	cirbpa	100	84.127	Poecilia_formosa
ENSNBRG00000019658	cirbpa	100	81.081	ENSPLAG00000011125	cirbpa	100	84.492	Poecilia_latipinna
ENSNBRG00000019658	cirbpa	100	81.383	ENSPMEG00000013878	cirbpa	100	84.574	Poecilia_mexicana
ENSNBRG00000019658	cirbpa	99	86.188	ENSPREG00000018042	cirbpa	98	85.870	Poecilia_reticulata
ENSNBRG00000019658	cirbpa	100	100.000	ENSPNYG00000007198	-	100	100.000	Pundamilia_nyererei
ENSNBRG00000019658	cirbpa	100	60.099	ENSPNAG00000019997	cirbpb	100	58.621	Pygocentrus_nattereri
ENSNBRG00000019658	cirbpa	100	61.702	ENSSFOG00015005346	cirbpb	100	60.638	Scleropages_formosus
ENSNBRG00000019658	cirbpa	100	58.201	ENSSFOG00015009951	cirbpa	100	60.847	Scleropages_formosus
ENSNBRG00000019658	cirbpa	100	70.000	ENSSMAG00000002412	cirbpa	99	62.944	Scophthalmus_maximus
ENSNBRG00000019658	cirbpa	63	97.368	ENSSLDG00000011320	cirbpa	55	97.368	Seriola_lalandi_dorsalis
ENSNBRG00000019658	cirbpa	100	70.109	ENSSPAG00000023037	cirbpa	50	97.531	Stegastes_partitus
ENSNBRG00000019658	cirbpa	100	73.224	ENSTRUG00000010187	cirbpa	100	71.038	Takifugu_rubripes
ENSNBRG00000019658	cirbpa	100	74.457	ENSTNIG00000000450	cirbpa	100	72.826	Tetraodon_nigroviridis
ENSNBRG00000019658	cirbpa	99	85.635	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSNBRG00000019658	cirbpa	100	85.946	ENSXMAG00000019336	cirbpa	100	88.108	Xiphophorus_maculatus